mRNA_P-wetherbeei_contig14.8.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14.8.1
Unique NamemRNA_P-wetherbeei_contig14.8.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14contigP-wetherbeei_contig14:18279..18957 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size679
Hectar predicted targeting categoryother localisation
Exons1
Cds size345
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186004.6680195-UTR-P-wetherbeei_contig14:18278..185301683186004.6680195-UTR-P-wetherbeei_contig14:18278..18530Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig14 18279..18530 -
1683186004.6868145-UTR-P-wetherbeei_contig14:18875..189571683186004.6868145-UTR-P-wetherbeei_contig14:18875..18957Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig14 18876..18957 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186004.6777976-CDS-P-wetherbeei_contig14:18530..188751683186004.6777976-CDS-P-wetherbeei_contig14:18530..18875Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14 18531..18875 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14.8.1prot_P-wetherbeei_contig14.8.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14 18531..18875 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14.8.1

>prot_P-wetherbeei_contig14.8.1 ID=prot_P-wetherbeei_contig14.8.1|Name=mRNA_P-wetherbeei_contig14.8.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=115bp
MDSCLSNIHQPRQRKHSCVAGRCTAVCRNSRFEHSGNVANSRRLRGGCRE
HGRRLHQRSHRPLLLSRWCRRCGGGGLGGGCGRLLLALYRLGSAAHLRLE
VGQSERHKHLTRAP*
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mRNA from alignment at P-wetherbeei_contig14:18279..18957-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14.8.1 ID=mRNA_P-wetherbeei_contig14.8.1|Name=mRNA_P-wetherbeei_contig14.8.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=679bp|location=Sequence derived from alignment at P-wetherbeei_contig14:18279..18957- (Phaeothamnion wetherbeei SAG_119_79)
TGATGACGCCATCGGGTAGTCGAAGGTGGAAGGCAATACGTGGAAACTGC
GTTTTGGGAAATATGTTATTGCAGTTGGCTTGATGGACAGTTGTCTATCT
AATATTCATCAGCCCAGACAAAGAAAGCACAGTTGCGTTGCGGGCAGGTG
TACAGCGGTCTGCCGTAATTCACGCTTCGAGCATTCTGGTAACGTTGCAA
ACAGCAGACGCCTCCGTGGCGGTTGCAGGGAACATGGTAGAAGATTACAT
CAGAGAAGTCACCGTCCTCTCTTGCTCTCCCGCTGGTGCCGGCGCTGCGG
TGGTGGTGGCCTTGGTGGCGGCTGCGGTCGTTTGTTGTTGGCGCTGTACA
GGCTTGGTTCGGCGGCGCACTTGAGGCTGGAGGTCGGGCAATCGGAAAGA
CATAAGCATCTTACGCGCGCTCCGTGAGAGTAGCATGCGCCAGTCGACGT
CGCACATGCAGGACGTCGCATTGGGAAAAAGAGGTCACGAGCATGTCGGA
CGAGATGTAATCTGCGAAAGCCATGACGAAAGCCATGACGAAAGATCCGC
ACTCGTATCTGCATTGGACGGTGCAGGAGAAAACGGAAAGAAGGCGAGGG
CGATTGTAAAAGTGTTTTGCCGGCGAAGGGAGACAACACGGAAAGGTGGT
GCATTGACTGACCCGTTGGTTTGCTGAGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14:18279..18957-

>mRNA_P-wetherbeei_contig14.8.1 ID=mRNA_P-wetherbeei_contig14.8.1|Name=mRNA_P-wetherbeei_contig14.8.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=345bp|location=Sequence derived from alignment at P-wetherbeei_contig14:18279..18957- (Phaeothamnion wetherbeei SAG_119_79)
ATGGACAGTTGTCTATCTAATATTCATCAGCCCAGACAAAGAAAGCACAG
TTGCGTTGCGGGCAGGTGTACAGCGGTCTGCCGTAATTCACGCTTCGAGC
ATTCTGGTAACGTTGCAAACAGCAGACGCCTCCGTGGCGGTTGCAGGGAA
CATGGTAGAAGATTACATCAGAGAAGTCACCGTCCTCTCTTGCTCTCCCG
CTGGTGCCGGCGCTGCGGTGGTGGTGGCCTTGGTGGCGGCTGCGGTCGTT
TGTTGTTGGCGCTGTACAGGCTTGGTTCGGCGGCGCACTTGAGGCTGGAG
GTCGGGCAATCGGAAAGACATAAGCATCTTACGCGCGCTCCGTGA
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