mRNA_P-wetherbeei_contig14.6.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14.6.1
Unique NamemRNA_P-wetherbeei_contig14.6.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig14.6.1 vs. uniprot
Match: A0A482SZT7_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SZT7_9ARCH)

HSP 1 Score: 72.0 bits (175), Expect = 3.130e-13
Identity = 34/70 (48.57%), Postives = 46/70 (65.71%), Query Frame = 2
Query:   53 VRQAFQSKLSKEVREVQDRQILLEHLAESRVLSLERYVAFLVMFHAMADASSLCWLRGRWEVGRSQSTLR 262
            VR AF SKL  + +++QD Q++++   E R+ SLERY+AF VMFHAMA      W    W++ RSQS LR
Sbjct:  172 VRSAFSSKLDTQTKQIQDLQVIVQQFYECRIASLERYLAFCVMFHAMAKDCKKPWFMPAWDIARSQSNLR 241          
BLAST of mRNA_P-wetherbeei_contig14.6.1 vs. uniprot
Match: A0A8J5XLW0_DIALT (Uncharacterized protein n=5 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XLW0_DIALT)

HSP 1 Score: 73.2 bits (178), Expect = 3.490e-13
Identity = 37/64 (57.81%), Postives = 47/64 (73.44%), Query Frame = 2
Query:   71 SKLSKEVREVQDRQILLEHLAESRVLSLERYVAFLVMFHAMADASSLCWLRGRWEVGRSQSTLR 262
            +KL  +V+EV DR + L+H  ESR+ SLERYV+F VMFHAMA+A+    LR  W VG+SQS LR
Sbjct: 1623 AKLDTDVQEVNDRHLTLQHFHESRIASLERYVSFCVMFHAMAEANHKPPLRRAWNVGKSQSNLR 1686          
BLAST of mRNA_P-wetherbeei_contig14.6.1 vs. uniprot
Match: A0A7S3GTP4_9STRA (Hypothetical protein n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GTP4_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 2.190e-11
Identity = 31/67 (46.27%), Postives = 46/67 (68.66%), Query Frame = 2
Query:   62 AFQSKLSKEVREVQDRQILLEHLAESRVLSLERYVAFLVMFHAMADASSLCWLRGRWEVGRSQSTLR 262
            AF +KL +  ++  DRQ+ ++   E R+ +LERY+AF V+FHAMA+++S  WL   W + RSQS LR
Sbjct:  143 AFNAKLDENTKKFIDRQVYVQQFYECRIAALERYLAFCVVFHAMAESNSRPWLTKAWNISRSQSNLR 209          
BLAST of mRNA_P-wetherbeei_contig14.6.1 vs. uniprot
Match: A0A1Y1HXS6_KLENI (Putative Glutamine amidotransferase type II n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HXS6_KLENI)

HSP 1 Score: 55.5 bits (132), Expect = 5.970e-7
Identity = 33/69 (47.83%), Postives = 43/69 (62.32%), Query Frame = 2
Query:   56 RQAFQSKLSKEVREVQDRQILLEHLAESRVLSLERYVAFLVMFHAMADASSLCWLRGRWEVGRSQSTLR 262
            R+   S +  +VR + D Q  +E   E+R LSLERY+AFLV FHAMA   +  W   R++V RSQS LR
Sbjct: 1220 REQILSAMELDVRRLLDSQSPMEEFTENRFLSLERYIAFLVTFHAMARTVASLWPL-RFDVSRSQSCLR 1287          
BLAST of mRNA_P-wetherbeei_contig14.6.1 vs. uniprot
Match: A0A835VV21_CHLIN (Uncharacterized protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835VV21_CHLIN)

HSP 1 Score: 52.4 bits (124), Expect = 7.320e-6
Identity = 29/58 (50.00%), Postives = 41/58 (70.69%), Query Frame = 2
Query:   89 VREVQDRQILLEHLAESRVLSLERYVAFLVMFHAMADASSLCWLRGRWEVGRSQSTLR 262
            V +V ++Q ++E L ESR LSLER +AF+VMFHAMA  ++  W    +++ RSQS LR
Sbjct: 2082 VEDVLNQQTVMEQLIESRYLSLERLIAFMVMFHAMARRTADWWPL-TYDIARSQSGLR 2138          
BLAST of mRNA_P-wetherbeei_contig14.6.1 vs. uniprot
Match: A0A1W5IZH8_9CHLO (Uncharacterized protein (Fragment) n=1 Tax=Pleodorina californica TaxID=47285 RepID=A0A1W5IZH8_9CHLO)

HSP 1 Score: 50.4 bits (119), Expect = 3.300e-5
Identity = 28/56 (50.00%), Postives = 39/56 (69.64%), Query Frame = 2
Query:   95 EVQDRQILLEHLAESRVLSLERYVAFLVMFHAMADASSLCWLRGRWEVGRSQSTLR 262
            +V  +Q ++E L ESR LSLER +AF+VMFHAMA  ++  W    +++ RSQS LR
Sbjct:  399 DVLHKQTVMEQLIESRYLSLERLIAFMVMFHAMARRTADWWPL-TFDIARSQSGLR 453          
BLAST of mRNA_P-wetherbeei_contig14.6.1 vs. uniprot
Match: D8TYG3_VOLCA (Uncharacterized protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TYG3_VOLCA)

HSP 1 Score: 50.1 bits (118), Expect = 3.540e-5
Identity = 28/56 (50.00%), Postives = 39/56 (69.64%), Query Frame = 2
Query:   95 EVQDRQILLEHLAESRVLSLERYVAFLVMFHAMADASSLCWLRGRWEVGRSQSTLR 262
            +V  +Q ++E L ESR LSLER +AF+VMFHAMA  ++  W    +++ RSQS LR
Sbjct:  123 DVLHKQTVMEQLVESRYLSLERLLAFMVMFHAMARRTADWWPL-TFDIARSQSGLR 177          
BLAST of mRNA_P-wetherbeei_contig14.6.1 vs. uniprot
Match: A0A1W5IZ57_9CHLO (Uncharacterized protein (Fragment) n=1 Tax=Platydorina caudata TaxID=51709 RepID=A0A1W5IZ57_9CHLO)

HSP 1 Score: 50.1 bits (118), Expect = 4.650e-5
Identity = 27/52 (51.92%), Postives = 37/52 (71.15%), Query Frame = 2
Query:  107 RQILLEHLAESRVLSLERYVAFLVMFHAMADASSLCWLRGRWEVGRSQSTLR 262
            +Q ++E L ESR LSLER +AF+VMFHAMA  ++  W    +++ RSQS LR
Sbjct:  741 KQTVMEQLLESRYLSLERLIAFMVMFHAMARRTADWWPL-TFDIARSQSGLR 791          
BLAST of mRNA_P-wetherbeei_contig14.6.1 vs. uniprot
Match: A0A1W6R6N1_9CHLO (Uncharacterized protein (Fragment) n=1 Tax=Yamagishiella unicocca TaxID=51707 RepID=A0A1W6R6N1_9CHLO)

HSP 1 Score: 50.1 bits (118), Expect = 4.650e-5
Identity = 28/56 (50.00%), Postives = 39/56 (69.64%), Query Frame = 2
Query:   95 EVQDRQILLEHLAESRVLSLERYVAFLVMFHAMADASSLCWLRGRWEVGRSQSTLR 262
            +V  +Q ++E L ESR LSLER V+F+VMFHAMA  ++  W    +++ RSQS LR
Sbjct:  749 DVLHKQTVMEQLLESRYLSLERLVSFMVMFHAMARRTADWWPLN-FDIARSQSGLR 803          
BLAST of mRNA_P-wetherbeei_contig14.6.1 vs. uniprot
Match: A0A1W5IU17_PANMO (Uncharacterized protein (Fragment) n=1 Tax=Pandorina morum TaxID=33099 RepID=A0A1W5IU17_PANMO)

HSP 1 Score: 49.7 bits (117), Expect = 6.330e-5
Identity = 28/56 (50.00%), Postives = 39/56 (69.64%), Query Frame = 2
Query:   95 EVQDRQILLEHLAESRVLSLERYVAFLVMFHAMADASSLCWLRGRWEVGRSQSTLR 262
            +V  +Q ++E L ESR LSLER +AF+VMFHAMA  ++  W    +++ RSQS LR
Sbjct:  656 DVLHKQTVMEQLLESRYLSLERLLAFMVMFHAMARRTADWWPL-TFDIARSQSGLR 710          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A482SZT7_9ARCH3.130e-1348.57Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A8J5XLW0_DIALT3.490e-1357.81Uncharacterized protein n=5 Tax=Diacronema lutheri... [more]
A0A7S3GTP4_9STRA2.190e-1146.27Hypothetical protein n=2 Tax=Spumella elongata Tax... [more]
A0A1Y1HXS6_KLENI5.970e-747.83Putative Glutamine amidotransferase type II n=1 Ta... [more]
A0A835VV21_CHLIN7.320e-650.00Uncharacterized protein n=1 Tax=Chlamydomonas ince... [more]
A0A1W5IZH8_9CHLO3.300e-550.00Uncharacterized protein (Fragment) n=1 Tax=Pleodor... [more]
D8TYG3_VOLCA3.540e-550.00Uncharacterized protein n=1 Tax=Volvox carteri f. ... [more]
A0A1W5IZ57_9CHLO4.650e-551.92Uncharacterized protein (Fragment) n=1 Tax=Platydo... [more]
A0A1W6R6N1_9CHLO4.650e-550.00Uncharacterized protein (Fragment) n=1 Tax=Yamagis... [more]
A0A1W5IU17_PANMO6.330e-550.00Uncharacterized protein (Fragment) n=1 Tax=Pandori... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14contigP-wetherbeei_contig14:14757..15275 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size265
Hectar predicted targeting categorymitochondrion
Exons2
Cds size264
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186004.6309533-CDS-P-wetherbeei_contig14:14756..148591683186004.6309533-CDS-P-wetherbeei_contig14:14756..14859Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14 14757..14859 +
1683186004.6405134-CDS-P-wetherbeei_contig14:15113..152741683186004.6405134-CDS-P-wetherbeei_contig14:15113..15274Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14 15114..15274 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14.6.1prot_P-wetherbeei_contig14.6.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14 14757..15274 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14.6.1

>prot_P-wetherbeei_contig14.6.1 ID=prot_P-wetherbeei_contig14.6.1|Name=mRNA_P-wetherbeei_contig14.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=88bp
PWRAAVRAGAGAAPLAGGTAGVPVQALQRGSRGAGPANPAGAPGGEPRAL
AGALRRFPRHVPRHGRRLQPLLAPRPVGGWALAEHAAG
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mRNA from alignment at P-wetherbeei_contig14:14757..15275+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14.6.1 ID=mRNA_P-wetherbeei_contig14.6.1|Name=mRNA_P-wetherbeei_contig14.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=519bp|location=Sequence derived from alignment at P-wetherbeei_contig14:14757..15275+ (Phaeothamnion wetherbeei SAG_119_79)
CCGTGGCGGGCCGCTGTTCGAGCGGGCGCAGGCGCTGCACCACTCGCTGG AGGTACGGCAGGCGTTCCAGTCCAAGCTCTCCAAAGAGGTTCGAGAGGTG CAGGTACGGCTTGTAACCAGTCCCGTCAAGCTTTGGTTAGCAGTGGACCT TTTTGTGTGCAATCTTAGGCCCTGAATCCGGCGTTCGTTTTCTTGCTTGC TTGTTTTTTTGTTCGTGGGTTTGTTAATTTGTCAGTTTTCTATCCTTTTT GCGCCCATTGTCCTTACACATCGGCAGAAGCGAGCGGTTTGTTCCGCATC TCCTAATCCTGGCCCCACGCACGAAGCACCGCCCCGTGAAAAATAACACG ATTGCAGGACCGGCAAATCCTGCTGGAGCACCTGGCGGAGAGCCGCGTGC TCTCGCTGGAGCGCTACGTCGCTTTCCTCGTCATGTTCCACGCCATGGCA GACGCCTCCAGCCTCTGCTGGCTCCGCGGCCGGTGGGAGGTTGGGCGCTC GCAGAGCACGCTGCGGGTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14:14757..15275+

>mRNA_P-wetherbeei_contig14.6.1 ID=mRNA_P-wetherbeei_contig14.6.1|Name=mRNA_P-wetherbeei_contig14.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=264bp|location=Sequence derived from alignment at P-wetherbeei_contig14:14757..15275+ (Phaeothamnion wetherbeei SAG_119_79)
CCGTGGCGGGCCGCTGTTCGAGCGGGCGCAGGCGCTGCACCACTCGCTGG
AGGTACGGCAGGCGTTCCAGTCCAAGCTCTCCAAAGAGGTTCGAGAGGTG
CAGGACCGGCAAATCCTGCTGGAGCACCTGGCGGAGAGCCGCGTGCTCTC
GCTGGAGCGCTACGTCGCTTTCCTCGTCATGTTCCACGCCATGGCAGACG
CCTCCAGCCTCTGCTGGCTCCGCGGCCGGTGGGAGGTTGGGCGCTCGCAG
AGCACGCTGCGGGT
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