mRNA_P-wetherbeei_contig14.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14.4.1
Unique NamemRNA_P-wetherbeei_contig14.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig14.4.1 vs. uniprot
Match: A0A835YVU8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVU8_9STRA)

HSP 1 Score: 142 bits (359), Expect = 2.580e-37
Identity = 68/105 (64.76%), Postives = 84/105 (80.00%), Query Frame = 1 
Query:    1 MRRWEGRRSGARMGKRTLVIADVPYVHQLLENFVSKCFALSYGFQSIEVHGTSPNDHFVHRFTHRVARGTLIAVGRPDGRICSLLKTEKTVLLAMKQAAFVENRG 315
            +R  +GR + ARMG RT+VI D+P VHQL E+FVSK F++ Y F S++VHG S  DHFVHRFTHRV RG L+AVGRPDGR+C+L KTE TVLLA+KQA F++N G
Sbjct: 1058 LRMAQGRPAWARMGARTIVIVDMPMVHQLTESFVSKLFSMGYSFVSVDVHGASGADHFVHRFTHRVVRGLLLAVGRPDGRLCALTKTEATVLLAVKQAVFIDNWG 1162
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BLAST of mRNA_P-wetherbeei_contig14.4.1 vs. uniprot
Match: A0A835Y6D4_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835Y6D4_9CHLO)

HSP 1 Score: 134 bits (337), Expect = 2.420e-34
Identity = 66/105 (62.86%), Postives = 80/105 (76.19%), Query Frame = 1 
Query:    1 MRRWEGRRSGARMGKRTLVIADVPYVHQLLENFVSKCFALSYGFQSIEVHGTSPNDHFVHRFTHRVARGTLIAVGRPDGRICSLLKTEKTVLLAMKQAAFVENRG 315
            +R  +GR    RMGKRT+V+ADVPYVHQ+LE FVSK +ALSYG  S+EVHG +P DHFVHRFTHRV RG LIA+GRPDGR+ S  K+E  VLL + QA  + + G
Sbjct: 1738 LRALQGRPLWHRMGKRTIVVADVPYVHQILETFVSKMYALSYGIASVEVHGANPLDHFVHRFTHRVVRGLLIALGRPDGRLYSQTKSESWVLLGLLQAKVITSWG 1842
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BLAST of mRNA_P-wetherbeei_contig14.4.1 vs. uniprot
Match: A0A1Y1HXS6_KLENI (Putative Glutamine amidotransferase type II n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HXS6_KLENI)

HSP 1 Score: 133 bits (334), Expect = 6.080e-34
Identity = 64/101 (63.37%), Postives = 79/101 (78.22%), Query Frame = 1 
Query:   13 EGRRSGARMGKRTLVIADVPYVHQLLENFVSKCFALSYGFQSIEVHGTSPNDHFVHRFTHRVARGTLIAVGRPDGRICSLLKTEKTVLLAMKQAAFVENRG 315
            +GR+  AR+GKRTLVI DVPYVHQLLE +VSK FALSY   SI+VHG++P DH VHRFTHRV RG L+A+GRPDGR+C+  K+E  VL+A+ Q   + N G
Sbjct: 1005 QGRQLLARLGKRTLVIGDVPYVHQLLEVYVSKLFALSYSIASIDVHGSNPLDHLVHRFTHRVVRGVLLAIGRPDGRLCTQTKSESWVLMALLQCKSIINGG 1105
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BLAST of mRNA_P-wetherbeei_contig14.4.1 vs. uniprot
Match: A0A1W5IZH8_9CHLO (Uncharacterized protein (Fragment) n=1 Tax=Pleodorina californica TaxID=47285 RepID=A0A1W5IZH8_9CHLO)

HSP 1 Score: 131 bits (330), Expect = 6.100e-34
Identity = 62/94 (65.96%), Postives = 75/94 (79.79%), Query Frame = 1 
Query:   34 RMGKRTLVIADVPYVHQLLENFVSKCFALSYGFQSIEVHGTSPNDHFVHRFTHRVARGTLIAVGRPDGRICSLLKTEKTVLLAMKQAAFVENRG 315
            RMGKRT+V+ADVPYVHQ++E FVSK +ALSYG  S+EVHG +P DHFVHRFTHRV RG LIA+GRPDGR+ S  K+E  VLL + QA  + + G
Sbjct:   85 RMGKRTIVVADVPYVHQIIETFVSKMYALSYGIASVEVHGANPVDHFVHRFTHRVVRGLLIALGRPDGRLYSQTKSESWVLLGLLQAKVITSWG 178
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BLAST of mRNA_P-wetherbeei_contig14.4.1 vs. uniprot
Match: A0A1W5IU17_PANMO (Uncharacterized protein (Fragment) n=1 Tax=Pandorina morum TaxID=33099 RepID=A0A1W5IU17_PANMO)

HSP 1 Score: 132 bits (333), Expect = 7.660e-34
Identity = 64/94 (68.09%), Postives = 75/94 (79.79%), Query Frame = 1 
Query:   34 RMGKRTLVIADVPYVHQLLENFVSKCFALSYGFQSIEVHGTSPNDHFVHRFTHRVARGTLIAVGRPDGRICSLLKTEKTVLLAMKQAAFVENRG 315
            RMGKRT+VIADVPYVHQ+LE FVSK +ALSYG  S+EVHG +P DHFVHRFTHRV RG LIA+GRPDGR+ S  K+E  VLL + QA  + + G
Sbjct:  329 RMGKRTIVIADVPYVHQILETFVSKMYALSYGIASVEVHGANPVDHFVHRFTHRVVRGLLIALGRPDGRLYSQTKSESWVLLGLLQAKVITSWG 422
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BLAST of mRNA_P-wetherbeei_contig14.4.1 vs. uniprot
Match: A0A1W5IZ57_9CHLO (Uncharacterized protein (Fragment) n=1 Tax=Platydorina caudata TaxID=51709 RepID=A0A1W5IZ57_9CHLO)

HSP 1 Score: 132 bits (332), Expect = 1.090e-33
Identity = 63/94 (67.02%), Postives = 75/94 (79.79%), Query Frame = 1 
Query:   34 RMGKRTLVIADVPYVHQLLENFVSKCFALSYGFQSIEVHGTSPNDHFVHRFTHRVARGTLIAVGRPDGRICSLLKTEKTVLLAMKQAAFVENRG 315
            RMGKRT+V+ADVPYVHQ+LE FVSK +ALSYG  S+EVHG +P DHFVHRFTHRV RG LIA+GRPDGR+ S  K+E  VLL + QA  + + G
Sbjct:  423 RMGKRTIVVADVPYVHQILETFVSKMYALSYGIASVEVHGANPVDHFVHRFTHRVVRGLLIALGRPDGRLYSQTKSESWVLLGLLQAKVITSWG 516
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BLAST of mRNA_P-wetherbeei_contig14.4.1 vs. uniprot
Match: A0A1W6R6N1_9CHLO (Uncharacterized protein (Fragment) n=1 Tax=Yamagishiella unicocca TaxID=51707 RepID=A0A1W6R6N1_9CHLO)

HSP 1 Score: 132 bits (331), Expect = 1.500e-33
Identity = 62/94 (65.96%), Postives = 75/94 (79.79%), Query Frame = 1 
Query:   34 RMGKRTLVIADVPYVHQLLENFVSKCFALSYGFQSIEVHGTSPNDHFVHRFTHRVARGTLIAVGRPDGRICSLLKTEKTVLLAMKQAAFVENRG 315
            RMGKRT+V+ADVPYVHQ++E FVSK +ALSYG  S+EVHG +P DHFVHRFTHRV RG LIA+GRPDGR+ S  K+E  VLL + QA  + + G
Sbjct:  406 RMGKRTIVVADVPYVHQIIETFVSKMYALSYGIASVEVHGANPADHFVHRFTHRVVRGLLIALGRPDGRLYSQTKSESWVLLGLLQAKVITSWG 499
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BLAST of mRNA_P-wetherbeei_contig14.4.1 vs. uniprot
Match: A0A150H4P4_GONPE (Glutamine amidotransferase type-2 domain-containing protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150H4P4_GONPE)

HSP 1 Score: 131 bits (330), Expect = 2.120e-33
Identity = 63/101 (62.38%), Postives = 78/101 (77.23%), Query Frame = 1 
Query:   13 EGRRSGARMGKRTLVIADVPYVHQLLENFVSKCFALSYGFQSIEVHGTSPNDHFVHRFTHRVARGTLIAVGRPDGRICSLLKTEKTVLLAMKQAAFVENRG 315
            +GR    RMGKRT+V+ADVPYVHQ++E FVSK +AL+YG  S+EVHG +P DHFVHRFTHRV RG LIA+GRPDGR+ S  K+E  VLL + QA  + + G
Sbjct: 1499 QGRPIWHRMGKRTIVVADVPYVHQIIETFVSKMYALAYGIASVEVHGANPVDHFVHRFTHRVVRGLLIALGRPDGRLYSQTKSESWVLLGLLQAKVITSWG 1599
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BLAST of mRNA_P-wetherbeei_contig14.4.1 vs. uniprot
Match: A0A835VV21_CHLIN (Uncharacterized protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835VV21_CHLIN)

HSP 1 Score: 131 bits (330), Expect = 2.120e-33
Identity = 65/104 (62.50%), Postives = 79/104 (75.96%), Query Frame = 1 
Query:    7 RWEGRRS-GARMGKRTLVIADVPYVHQLLENFVSKCFALSYGFQSIEVHGTSPNDHFVHRFTHRVARGTLIAVGRPDGRICSLLKTEKTVLLAMKQAAFVENRG 315
            RW  RR    RMGKRT+V+ADVPYVHQ++E +VSK +AL+YG  S+EVHG +P DHFVHRFTHRV RG LIA+GRPDGR+ S  K+E  VLL + QA  + N G
Sbjct: 1747 RWLQRRPIWHRMGKRTIVVADVPYVHQIIETYVSKMYALAYGIASVEVHGANPLDHFVHRFTHRVVRGLLIALGRPDGRLYSQTKSESWVLLGLLQAKVITNWG 1850
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BLAST of mRNA_P-wetherbeei_contig14.4.1 vs. uniprot
Match: A0A8J4EV38_9CHLO (Uncharacterized protein n=2 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4EV38_9CHLO)

HSP 1 Score: 131 bits (330), Expect = 2.130e-33
Identity = 62/94 (65.96%), Postives = 75/94 (79.79%), Query Frame = 1 
Query:   34 RMGKRTLVIADVPYVHQLLENFVSKCFALSYGFQSIEVHGTSPNDHFVHRFTHRVARGTLIAVGRPDGRICSLLKTEKTVLLAMKQAAFVENRG 315
            RMGKRT+V+ADVPYVHQ++E FVSK +ALSYG  S+EVHG +P DHFVHRFTHRV RG LIA+GRPDGR+ S  K+E  VLL + QA  + + G
Sbjct: 1767 RMGKRTIVVADVPYVHQIIETFVSKMYALSYGIASVEVHGANPVDHFVHRFTHRVVRGLLIALGRPDGRLYSQTKSESWVLLGLLQAKVITSWG 1860
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YVU8_9STRA2.580e-3764.76Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Y6D4_9CHLO2.420e-3462.86Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]
A0A1Y1HXS6_KLENI6.080e-3463.37Putative Glutamine amidotransferase type II n=1 Ta... [more]
A0A1W5IZH8_9CHLO6.100e-3465.96Uncharacterized protein (Fragment) n=1 Tax=Pleodor... [more]
A0A1W5IU17_PANMO7.660e-3468.09Uncharacterized protein (Fragment) n=1 Tax=Pandori... [more]
A0A1W5IZ57_9CHLO1.090e-3367.02Uncharacterized protein (Fragment) n=1 Tax=Platydo... [more]
A0A1W6R6N1_9CHLO1.500e-3365.96Uncharacterized protein (Fragment) n=1 Tax=Yamagis... [more]
A0A150H4P4_GONPE2.120e-3362.38Glutamine amidotransferase type-2 domain-containin... [more]
A0A835VV21_CHLIN2.120e-3362.50Uncharacterized protein n=1 Tax=Chlamydomonas ince... [more]
A0A8J4EV38_9CHLO2.130e-3365.96Uncharacterized protein n=2 Tax=Volvox africanus T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14contigP-wetherbeei_contig14:11679..12833 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog3067.XP_002951461.1
PFAMsEF-hand_7
Model size315
Max annot lvl3041|Chlorophyta
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.64e-33
EggNOG OGs29176@1|root,2R831@2759|Eukaryota,37UWH@33090|Viridiplantae,34HWI@3041|Chlorophyta
Cds size315
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186004.8160994-CDS-P-wetherbeei_contig14:11678..117621683186004.8160994-CDS-P-wetherbeei_contig14:11678..11762Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14 11679..11762 +
1683186004.8267918-CDS-P-wetherbeei_contig14:12038..120961683186004.8267918-CDS-P-wetherbeei_contig14:12038..12096Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14 12039..12096 +
1683186004.8354514-CDS-P-wetherbeei_contig14:12660..128331683186004.8354514-CDS-P-wetherbeei_contig14:12660..12833Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14 12661..12833 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14.4.1prot_P-wetherbeei_contig14.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14 11679..12833 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14.4.1

>prot_P-wetherbeei_contig14.4.1 ID=prot_P-wetherbeei_contig14.4.1|Name=mRNA_P-wetherbeei_contig14.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=105bp
MRRWEGRRSGARMGKRTLVIADVPYVHQLLENFVSKCFALSYGFQSIEVH
GTSPNDHFVHRFTHRVARGTLIAVGRPDGRICSLLKTEKTVLLAMKQAAF
VENRG
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mRNA from alignment at P-wetherbeei_contig14:11679..12833+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14.4.1 ID=mRNA_P-wetherbeei_contig14.4.1|Name=mRNA_P-wetherbeei_contig14.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1155bp|location=Sequence derived from alignment at P-wetherbeei_contig14:11679..12833+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGGCGGTGGGAAGGGCGGCGGTCAGGGGCACGGATGGGCAAGCGGAC
ACTCGTCATCGCCGACGTGCCGTACGTCCACCAGGTGATGCACGGGAACG
AGAAGTGGCGGCCGCCTCGGAGGAGAACGCGTCACCTGCCTGCAGTAACC
CTTTTCTTCTCGGCTGCGTGGGGCTGCATGAGGCGACACACCGCCGTGCT
TCCGCATATCTCTTCCTGCTTCTCGATTCAGCGCAAATAGACTAAAGGTC
ATACGACAATGACGACTTCCTGTAGCCACGTGCTTAATCTTTCATGCCTC
TGGCGCCTGGCCAAATCTAAACCCACCTTTCAATTTTCTTATTCTTCTCC
TTCGTTTCAGCTCCTGGAAAACTTCGTCTCCAAGTGCTTTGCGCTCAGCT
ATGGCTTTCAATCCATCGGTGAGTCGGATTGCAGCTGTCAATTGAGTTGG
GGCGTACATAGCTCGTTTCCCTTCGCTGTTTAAAGACAGCAAAGGGAAGT
GGTTCCAGGCGAAAGTGCGGTGACGGTGGTGGCGGCGGCATGGCACCCGA
GCGGGCCAGCCGTGAAGCCGGTGGTTATGGTACCAGTGGCAGGCCAGCCC
CGCGCTTAGTGGAATCAGAACACGCATAGCACCCCATTTGACGCACCTTT
CCTTTGGCGCGCCCACCCTTCCGGCTCACCCTAAACGCCTTCCATTCTGA
CCGCTGCACGCCGTTGCGATCTTCCACTCCCAATCCCTCCACTGCCATCT
GCCGCGTACCGCCTGCCTCCATCTGCCACCGCCACCGCCGCCGCCATTGT
CGCCGCCGTCATTGTCGCCGTTGCCCCCGCCACCGTCGCCTGTCGCCCGC
TGCCGCCACCACCGCCACCACCACCTCTGCCGCCCGCCGCCGTCGGCCAC
CGCCCGCCCGCCTGACCCGCCTCTTTTCCTCCGGCCACCGCCACCGGCAA
CCCGCTCTCTCCATCCTGCTCCCGCCCCGCAGAGGTCCACGGCACGTCTC
CCAACGACCACTTTGTGCACCGCTTCACACACCGCGTCGCCCGTGGCACA
CTTATCGCCGTGGGGCGTCCAGACGGTCGCATCTGCTCGCTGCTCAAGAC
GGAAAAGACGGTGTTGCTCGCGATGAAGCAAGCGGCGTTCGTCGAGAACC
GCGGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14:11679..12833+

>mRNA_P-wetherbeei_contig14.4.1 ID=mRNA_P-wetherbeei_contig14.4.1|Name=mRNA_P-wetherbeei_contig14.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=315bp|location=Sequence derived from alignment at P-wetherbeei_contig14:11679..12833+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGGCGGTGGGAAGGGCGGCGGTCAGGGGCACGGATGGGCAAGCGGAC
ACTCGTCATCGCCGACGTGCCGTACGTCCACCAGCTCCTGGAAAACTTCG
TCTCCAAGTGCTTTGCGCTCAGCTATGGCTTTCAATCCATCGAGGTCCAC
GGCACGTCTCCCAACGACCACTTTGTGCACCGCTTCACACACCGCGTCGC
CCGTGGCACACTTATCGCCGTGGGGCGTCCAGACGGTCGCATCTGCTCGC
TGCTCAAGACGGAAAAGACGGTGTTGCTCGCGATGAAGCAAGCGGCGTTC
GTCGAGAACCGCGGG
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