mRNA_P-wetherbeei_contig13999.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13999.1.1
Unique NamemRNA_P-wetherbeei_contig13999.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig13999.1.1 vs. uniprot
Match: A0A836C8B8_9STRA (Phosphatidate cytidylyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8B8_9STRA)

HSP 1 Score: 140 bits (353), Expect = 5.630e-38
Identity = 70/102 (68.63%), Postives = 81/102 (79.41%), Query Frame = 1 
Query:   31 MIFLFIGIIYAGHLYVSMLVVVLQALVFKEMVNVRYVKAKERDIPLFRTLQWSWFAVATFYTYGDFLHEFCLQHEPLLWLAAATNFHSAYCFGLYCTVFVMS 336
            MI  F  II+AGHLYV MLVV+LQ+LVFKEMVNVRY  AKE+ +PLFRTLQWSWFAVA FYTYGDF HEF L+H  LLWLA  T +H+   F +YC +FV+S
Sbjct:    3 MIAAFGAIIWAGHLYVCMLVVLLQSLVFKEMVNVRYNIAKEKSVPLFRTLQWSWFAVAVFYTYGDFFHEFVLEHRELLWLAPITKWHAGVSFSMYCCIFVLS 104
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BLAST of mRNA_P-wetherbeei_contig13999.1.1 vs. uniprot
Match: A0A6H5L891_9PHAE (Phosphatidate cytidylyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L891_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 2.550e-37
Identity = 71/109 (65.14%), Postives = 86/109 (78.90%), Query Frame = 1 
Query:   10 RTVFGFGMIFLFIGIIYAGHLYVSMLVVVLQALVFKEMVNVRYVKAKERDIPLFRTLQWSWFAVATFYTYGDFLHEFCLQHEPLLWLAAATNFHSAYCFGLYCTVFVMS 336
            R+V GF M+  F+GI++AGHLY+  LVV++QA VFKEMV+VRY  AKERD+PLFRTLQWSWF VA FYTYGDFLHEF L+H  LLWL+  T F++   F  YC VFV+S
Sbjct:   57 RSVVGFFMVTSFVGIVWAGHLYLCALVVLIQACVFKEMVSVRYSAAKERDMPLFRTLQWSWFVVAIFYTYGDFLHEFVLKHRALLWLSHITMFNAWLSFIAYCCVFVVS 165
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BLAST of mRNA_P-wetherbeei_contig13999.1.1 vs. uniprot
Match: A0A3R7AS21_9STRA (Phosphatidate cytidylyltransferase n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7AS21_9STRA)

HSP 1 Score: 102 bits (255), Expect = 2.510e-25
Identity = 58/112 (51.79%), Postives = 71/112 (63.39%), Query Frame = 1 
Query:   10 RTVFGFGMIFLFIGIIYAGHLYVSMLVVVLQALVFKEMVNVRYVKAKERDIPLFRTLQWSWFAVATFYTYGDFLHEFCLQHEPLL---WLAAATNFHSAYCFGLYCTVFVMS 336
            R V GF MI LF  IIY GHLYV++LVVVLQ L+F+E+VNVRY  A E++IP FR++QW WF VA  Y YGD    F   +   L   WL     +H+   F LY T+FV S
Sbjct:   56 RVVAGFSMIALFGLIIYGGHLYVTLLVVVLQTLIFRELVNVRYRAAAEKNIPWFRSIQWCWFGVALLYNYGDSFQTFLRSNHNQLDFPWLRMYLQYHTWVSFSLYATLFVFS 167
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BLAST of mRNA_P-wetherbeei_contig13999.1.1 vs. uniprot
Match: A0A7S3XMY3_HETAK (Phosphatidate cytidylyltransferase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XMY3_HETAK)

HSP 1 Score: 102 bits (254), Expect = 4.650e-24
Identity = 53/109 (48.62%), Postives = 72/109 (66.06%), Query Frame = 1 
Query:   10 RTVFGFGMIFLFIGIIYAGHLYVSMLVVVLQALVFKEMVNVRYVKAKERDIPLFRTLQWSWFAVATFYTYGDFLHEFCLQHEPLLWLAAATNFHSAYCFGLYCTVFVMS 336
            R VFG  M+ +F GII AGH+YV  +++++Q LVF+E+VNVRY  +KE+ IPLFRT+QW WFAV  +YTYGDFL EF + H    +L     +        Y  VF++S
Sbjct:   49 RAVFGLLMLGVFFGIICAGHIYVCAVIMIMQGLVFRELVNVRYEASKEKHIPLFRTIQWVWFAVGLYYTYGDFLLEFAVTHPRASYLVPYVEWVPFIAMMGYAAVFILS 157
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BLAST of mRNA_P-wetherbeei_contig13999.1.1 vs. uniprot
Match: D7FV14_ECTSI (Phosphatidate cytidylyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV14_ECTSI)

HSP 1 Score: 102 bits (254), Expect = 8.490e-24
Identity = 49/72 (68.06%), Postives = 56/72 (77.78%), Query Frame = 1 
Query:  121 MVNVRYVKAKERDIPLFRTLQWSWFAVATFYTYGDFLHEFCLQHEPLLWLAAATNFHSAYCFGLYCTVFVMS 336
            MV+VRY  AKERD+PLFRTLQWSWF VA FYTYGDFLHEF L+H  LLWL+  T F++   F  YC VFV+S
Sbjct:    1 MVSVRYSAAKERDMPLFRTLQWSWFVVAIFYTYGDFLHEFVLKHRALLWLSHITMFNAWLSFTAYCCVFVVS 72
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BLAST of mRNA_P-wetherbeei_contig13999.1.1 vs. uniprot
Match: W4FXX2_9STRA (Phosphatidate cytidylyltransferase n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FXX2_9STRA)

HSP 1 Score: 102 bits (255), Expect = 1.700e-23
Identity = 58/112 (51.79%), Postives = 71/112 (63.39%), Query Frame = 1 
Query:   10 RTVFGFGMIFLFIGIIYAGHLYVSMLVVVLQALVFKEMVNVRYVKAKERDIPLFRTLQWSWFAVATFYTYGDFLHEFCLQHEPLL---WLAAATNFHSAYCFGLYCTVFVMS 336
            R V GF MI LF  IIY GHLYV++LVVVLQ L+F+E+VNVRY  A E++IP FR++QW WF VA  Y YGD    F   +   L   WL     +H+   F LY T+FV S
Sbjct:   56 RVVAGFSMIALFGLIIYGGHLYVTLLVVVLQTLIFRELVNVRYRAAAEKNIPWFRSIQWCWFGVALLYNYGDSFQTFLRSNHNQLDFPWLRMYLQYHTWVSFSLYATLFVFS 167
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BLAST of mRNA_P-wetherbeei_contig13999.1.1 vs. uniprot
Match: A0A024TU16_9STRA (Phosphatidate cytidylyltransferase n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TU16_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 2.860e-22
Identity = 56/112 (50.00%), Postives = 69/112 (61.61%), Query Frame = 1 
Query:   10 RTVFGFGMIFLFIGIIYAGHLYVSMLVVVLQALVFKEMVNVRYVKAKERDIPLFRTLQWSWFAVATFYTYGDFLHEFCLQHEPLL---WLAAATNFHSAYCFGLYCTVFVMS 336
            R V G  MI LF  IIY GHLYV++LVV+LQ L+F+E+VNVRY  A E++IP FR++QW WF VA  Y YGD    F       L   WL     +H+   F LY T+FV S
Sbjct:   51 RVVAGISMIGLFGLIIYGGHLYVTLLVVILQTLIFRELVNVRYRAAAEKNIPWFRSIQWCWFGVALLYNYGDSFQSFLRSTHTKLDFPWLRMYLQYHTWVSFSLYATLFVFS 162
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BLAST of mRNA_P-wetherbeei_contig13999.1.1 vs. uniprot
Match: A0A662XCN9_9STRA (Phosphatidate cytidylyltransferase n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XCN9_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 6.380e-22
Identity = 52/114 (45.61%), Postives = 73/114 (64.04%), Query Frame = 1 
Query:    7 TRTVFGFGMIFLFIGIIYAGHLYVSMLVVVLQALVFKEMVNVRYVKAKERDIPLFRTLQWSWFAVATFYTYGDFLHEFCLQHEPLLWLAAAT----NFHSAYCFGLYCTVFVMS 336
            TR V GF MI  F+G++Y GH+Y   LVVVLQ L+F+E+VNVRY  A E+ IP FR++QW WF+VA F+ YGD    F ++   + ++  A      +H+   F +Y  +FVMS
Sbjct:   45 TRVVVGFAMIGAFVGVMYGGHMYAWGLVVVLQTLLFRELVNVRYRAAAEKSIPWFRSVQWMWFSVALFFNYGDSFGAF-IESSKIRFVPPAIVHYLRYHTWVSFSMYAALFVMS 157
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BLAST of mRNA_P-wetherbeei_contig13999.1.1 vs. uniprot
Match: A0A7S3K3N3_9STRA (Phosphatidate cytidylyltransferase n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K3N3_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 6.950e-22
Identity = 48/101 (47.52%), Postives = 67/101 (66.34%), Query Frame = 1 
Query:   43 FIGIIYAGHLYVSMLVVVLQALVFKEMVNVRYVKAKER---DIPLFRTLQWSWFAVATFYTYGDFLHEFCLQHEPLLWLAAATNFHSAYCFGLYCTVFVMS 336
            F+ I++AGH+YV +LV++LQ L F+E+VNVRY + K +    +PLFRTLQW W+ +A  + YGDF+  F   HE   WL   T  H    FGLYC +F++S
Sbjct:   51 FMSIVWAGHMYVCILVMILQGLSFREVVNVRYREYKSQMDVQMPLFRTLQWLWYGLAMVFVYGDFIKVFSHTHESAAWLVPYTRHHGIVTFGLYCLIFMIS 151
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BLAST of mRNA_P-wetherbeei_contig13999.1.1 vs. uniprot
Match: A0A7R9UBI3_9STRA (Phosphatidate cytidylyltransferase (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UBI3_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 8.580e-22
Identity = 46/87 (52.87%), Postives = 63/87 (72.41%), Query Frame = 1 
Query:   10 RTVFGFGMIFLFIGIIYAGHLYVSMLVVVLQALVFKEMVNVRYVKAKERDIPLFRTLQWSWFAVATFYTYGDFLHEFCLQHEPLLWL 270
            R +FGF MI LF+ ++ AGHLYV+ +V+++Q  ++ E+VNVRY   +E +IPLFRT QWSWF VA FYTYG++L +F      L WL
Sbjct:   88 RALFGFTMIGLFLMVVAAGHLYVAGMVLMMQCALYLELVNVRYDATRELEIPLFRTTQWSWFTVAIFYTYGEWLRDFSFSKPGLHWL 174
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13999.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C8B8_9STRA5.630e-3868.63Phosphatidate cytidylyltransferase n=1 Tax=Tribone... [more]
A0A6H5L891_9PHAE2.550e-3765.14Phosphatidate cytidylyltransferase n=1 Tax=Ectocar... [more]
A0A3R7AS21_9STRA2.510e-2551.79Phosphatidate cytidylyltransferase n=4 Tax=Aphanom... [more]
A0A7S3XMY3_HETAK4.650e-2448.62Phosphatidate cytidylyltransferase n=1 Tax=Heteros... [more]
D7FV14_ECTSI8.490e-2468.06Phosphatidate cytidylyltransferase n=1 Tax=Ectocar... [more]
W4FXX2_9STRA1.700e-2351.79Phosphatidate cytidylyltransferase n=5 Tax=Aphanom... [more]
A0A024TU16_9STRA2.860e-2250.00Phosphatidate cytidylyltransferase n=2 Tax=Aphanom... [more]
A0A662XCN9_9STRA6.380e-2245.61Phosphatidate cytidylyltransferase n=1 Tax=Nothoph... [more]
A0A7S3K3N3_9STRA6.950e-2247.52Phosphatidate cytidylyltransferase n=1 Tax=Aureoum... [more]
A0A7R9UBI3_9STRA8.580e-2252.87Phosphatidate cytidylyltransferase (Fragment) n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13999contigP-wetherbeei_contig13999:1067..1764 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FV14
Preferred nameCDS1
PFAMsCTP_transf_1
Model size336
Max annot lvl2759|Eukaryota
KEGG rclassRC00002
KEGG koko:K00981,ko:K08818
KEGG ReactionR01799
KEGG Pathwayko00564,ko01100,ko01110,ko04070,map00564,map01100,map01110,map04070
KEGG ModuleM00093
Hectar predicted targeting categorysignal anchor
GOsGO:0000003,GO:0003006,GO:0003674,GO:0003824,GO:0004142,GO:0004605,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005783,GO:0005789,GO:0006139,GO:0006220,GO:0006221,GO:0006575,GO:0006629,GO:0006644,GO:0006650,GO:0006655,GO:0006656,GO:0006657,GO:0006658,GO:0006661,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0007154,GO:0007165,GO:0007186,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007291,GO:0007349,GO:0007602,GO:0007603,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009117,GO:0009165,GO:0009266,GO:0009314,GO:0009416,GO:0009581,GO:0009582,GO:0009583,GO:0009584,GO:0009605,GO:0009628,GO:0009653,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010511,GO:0010513,GO:0010562,GO:0010866,GO:0010868,GO:0010883,GO:0012505,GO:0016020,GO:0016021,GO:0016024,GO:0016056,GO:0016740,GO:0016772,GO:0016779,GO:0016780,GO:0017169,GO:0018130,GO:0019216,GO:0019220,GO:0019222,GO:0019438,GO:0019637,GO:0019866,GO:0019953,GO:0022412,GO:0022414,GO:0023052,GO:0030133,GO:0030154,GO:0031090,GO:0031224,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031410,GO:0031966,GO:0031967,GO:0031975,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0032504,GO:0032879,GO:0034641,GO:0034654,GO:0040011,GO:0042175,GO:0042330,GO:0043052,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045017,GO:0045833,GO:0045834,GO:0045937,GO:0046341,GO:0046470,GO:0046471,GO:0046474,GO:0046483,GO:0046486,GO:0046488,GO:0046889,GO:0046890,GO:0048232,GO:0048468,GO:0048515,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048609,GO:0048646,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051055,GO:0051174,GO:0051606,GO:0051704,GO:0051716,GO:0055086,GO:0065007,GO:0065008,GO:0070085,GO:0070319,GO:0070382,GO:0070567,GO:0071071,GO:0071073,GO:0071214,GO:0071478,GO:0071482,GO:0071704,GO:0072527,GO:0072528,GO:0080090,GO:0090207,GO:0090209,GO:0090407,GO:0097164,GO:0097708,GO:0098827,GO:0099503,GO:0104004,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1903725,GO:1903727,GO:1905952
Exons2
Evalue1.39e-24
EggNOG OGsCOG0575@1|root,KOG1440@2759|Eukaryota
Ec32 ortholog descriptionphosphatidate cytidylyltransferase
Ec32 orthologEc-14_003790.1
EC2.7.11.22,2.7.7.41
Descriptionphosphatidate cytidylyltransferase activity
Cds size336
COG categoryI
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186004.5931761-CDS-P-wetherbeei_contig13999:1066..11681683186004.5931761-CDS-P-wetherbeei_contig13999:1066..1168Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13999 1067..1168 +
1683186004.6071227-CDS-P-wetherbeei_contig13999:1530..17641683186004.6071227-CDS-P-wetherbeei_contig13999:1530..1764Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13999 1531..1764 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13999.1.1prot_P-wetherbeei_contig13999.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13999 1067..1764 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13999.1.1

>prot_P-wetherbeei_contig13999.1.1 ID=prot_P-wetherbeei_contig13999.1.1|Name=mRNA_P-wetherbeei_contig13999.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=112bp
MTTRTVFGFGMIFLFIGIIYAGHLYVSMLVVVLQALVFKEMVNVRYVKAK
ERDIPLFRTLQWSWFAVATFYTYGDFLHEFCLQHEPLLWLAAATNFHSAY
CFGLYCTVFVMS
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mRNA from alignment at P-wetherbeei_contig13999:1067..1764+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13999.1.1 ID=mRNA_P-wetherbeei_contig13999.1.1|Name=mRNA_P-wetherbeei_contig13999.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=698bp|location=Sequence derived from alignment at P-wetherbeei_contig13999:1067..1764+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACGACGCGAACAGTGTTCGGCTTCGGCATGATCTTCCTCTTTATAGG
AATTATTTACGCCGGGCACCTTTACGTCTCGATGCTTGTCGTCGTGCTCC
AGGTGCCCACTTTCCTTTGCAAGTAGCCGCTGAGCATTCTCTGCCGGGTT
TTTCATTACATACTCATTCCTTGCAACAAATTTAGCCCCCGCCTGTCTCT
GGCGTAGCTATCCGTTTTTCTTAATTGCTGTTATCCATCCCTCTTCTGCA
TTAAGGTCCATCCTGGGTTTCGATGCGAAGAAGAAACAAAGCAGCCCATC
TGGAGTAGCTGCATCTCTTACCCACTGCGGATGTCACTGCCGTCGCCACC
ACCGCCGCCATCGCTGCCACCGCTGCCGCCATCTCCGTCTTTGCCTGTGC
CACCATCCACTGCCCGTCCGTGGCCTCACGCCGACCGCCGTGTTTCTTGC
CCGTTCCGCCCCAGGCGCTCGTGTTTAAGGAGATGGTGAATGTGCGGTAC
GTCAAGGCCAAAGAACGCGACATCCCGCTGTTCCGGACGTTGCAGTGGTC
GTGGTTCGCCGTCGCGACCTTCTACACGTACGGCGACTTCCTCCACGAAT
TCTGCCTGCAGCACGAGCCGCTGCTGTGGCTGGCGGCCGCCACCAACTTC
CACTCGGCCTATTGCTTCGGGCTCTACTGCACTGTCTTTGTGATGTCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13999:1067..1764+

>mRNA_P-wetherbeei_contig13999.1.1 ID=mRNA_P-wetherbeei_contig13999.1.1|Name=mRNA_P-wetherbeei_contig13999.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=336bp|location=Sequence derived from alignment at P-wetherbeei_contig13999:1067..1764+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACGACGCGAACAGTGTTCGGCTTCGGCATGATCTTCCTCTTTATAGG
AATTATTTACGCCGGGCACCTTTACGTCTCGATGCTTGTCGTCGTGCTCC
AGGCGCTCGTGTTTAAGGAGATGGTGAATGTGCGGTACGTCAAGGCCAAA
GAACGCGACATCCCGCTGTTCCGGACGTTGCAGTGGTCGTGGTTCGCCGT
CGCGACCTTCTACACGTACGGCGACTTCCTCCACGAATTCTGCCTGCAGC
ACGAGCCGCTGCTGTGGCTGGCGGCCGCCACCAACTTCCACTCGGCCTAT
TGCTTCGGGCTCTACTGCACTGTCTTTGTGATGTCG
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