mRNA_P-wetherbeei_contig13985.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13985.1.1
Unique NamemRNA_P-wetherbeei_contig13985.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig13985.1.1 vs. uniprot
Match: A0A836CJK2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJK2_9STRA)

HSP 1 Score: 105 bits (263), Expect = 1.110e-20
Identity = 79/241 (32.78%), Postives = 123/241 (51.04%), Query Frame = 1 
Query:  577 KLFQSMLDGLRVQVWEPLKAD-FTRWCAENHLS--VDPRNLLLTLGEDSAAELM-----KRITKEDAANLTTMLLIYLQCDFVPLRSQILRDSLVHEYKLNLISQQIRLTMDKRRGFKTLAYQGGSSVPATTTWLLPKGMTEALQYYKMVCRPLLLGGLSSTS--MFLSRKGESLQQSEIYSMFNGLGRQWLGIPRFGTHICRSFVISQKAHSGEINASNLVE-IGSLMQTSAATLHTNYV 1266
            ++ Q+M+ GL+ QVW+P+  +  T W   +  S  V  ++ L     D A +LM     K +TKED  NL  +L I+L      LRSQ+ RDSLV EYKL     +    +D  R FKT        +P  T+W L +  +  +   K++ RPL   G    S  MFL   G+ + Q E+   F  +GR+W+G+PR G H  R+  +S   ++  + +   +E + + +Q S AT+  +YV
Sbjct:  452 QVLQTMISGLKEQVWQPIWDEAITPWLLAHTASKTVSTQDFLAA-SLDGAGDLMAFASAKGVTKEDYINLQNVLKIHLSA----LRSQVFRDSLVSEYKLQEREGRRGYVLDMTRAFKTCTADSRDGLPHLTSWALSEYESGLIHAIKLL-RPLATLGAGGVSDHMFLDTSGKFVPQREMAKDFWAIGREWVGVPRLGPHSLRTMWLSWIVNNNPLISDRDIEALAAYVQVSRATMLDSYV 686
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13985.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CJK2_9STRA1.110e-2032.78Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13985contigP-wetherbeei_contig13985:105..1550 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1329
Hectar predicted targeting categoryother localisation
Exons2
Cds size1329
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186004.2759783-CDS-P-wetherbeei_contig13985:104..4001683186004.2759783-CDS-P-wetherbeei_contig13985:104..400Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13985 105..400 +
1683186004.2858477-CDS-P-wetherbeei_contig13985:517..15501683186004.2858477-CDS-P-wetherbeei_contig13985:517..1550Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13985 518..1550 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13985.1.1prot_P-wetherbeei_contig13985.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13985 105..1550 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13985.1.1

>prot_P-wetherbeei_contig13985.1.1 ID=prot_P-wetherbeei_contig13985.1.1|Name=mRNA_P-wetherbeei_contig13985.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=443bp
MFSNDILGFVTEVLGRPCHPFSAIFPLRRCEFLALRKLGVPEHLLEGTAS
SPSVCFGDLLKNKVGYKHDTASGILLDWASSDDFFPELFVPHAMRAYRTL
LSNVFEMLQTVRGDIFALSPQDTHFFGADISTNARDPLRYKFLEFLSKLK
GVYAVQRSRARRLAAVREFRESDGSGKIERGRMLDPAEEESGKLFQSMLD
GLRVQVWEPLKADFTRWCAENHLSVDPRNLLLTLGEDSAAELMKRITKED
AANLTTMLLIYLQCDFVPLRSQILRDSLVHEYKLNLISQQIRLTMDKRRG
FKTLAYQGGSSVPATTTWLLPKGMTEALQYYKMVCRPLLLGGLSSTSMFL
SRKGESLQQSEIYSMFNGLGRQWLGIPRFGTHICRSFVISQKAHSGEINA
SNLVEIGSLMQTSAATLHTNYVSRINGNSSEQLADRIFGGASN
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mRNA from alignment at P-wetherbeei_contig13985:105..1550+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13985.1.1 ID=mRNA_P-wetherbeei_contig13985.1.1|Name=mRNA_P-wetherbeei_contig13985.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1446bp|location=Sequence derived from alignment at P-wetherbeei_contig13985:105..1550+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTTTTCTAATGACATTCTCGGTTTCGTCACTGAGGTCCTGGGGCGACC
GTGCCATCCATTCTCTGCCATCTTCCCGCTGCGGCGCTGCGAGTTTCTTG
CGTTACGGAAGCTTGGTGTTCCGGAGCACCTCCTTGAAGGCACGGCATCA
TCTCCGTCTGTCTGCTTTGGCGATCTTCTGAAGAACAAGGTCGGCTACAA
ACACGATACTGCATCTGGCATACTCCTAGACTGGGCATCATCAGACGACT
TCTTTCCGGAACTCTTTGTGCCCCATGCCATGCGGGCATACCGCACGTTT
CGCATCGCCGAGCGCCTTTGCAATGACCCAGGCAGCGGCCTCGTGTCGAT
CTTGGCAGCATGTGACCAAGTGGACGACTCAAGCAGCGCCGGCACGTTCA
ACACAAGCTTCAGTCTGCTCTCAAATGTCTTTGAGATGCTGCAGACCGTT
CGAGGAGACATTTTTGCGCTTTCCCCTCAAGACACGCACTTTTTTGGAGC
TGATATCTCAACAAACGCTCGCGACCCCCTTCGGTACAAGTTTCTGGAGT
TTCTTTCCAAACTTAAAGGGGTGTATGCCGTGCAGCGTTCACGTGCTCGG
CGTCTTGCGGCCGTGAGAGAATTCCGAGAGTCTGACGGATCCGGTAAAAT
TGAGCGAGGCCGCATGCTCGATCCCGCCGAAGAAGAGTCTGGAAAACTGT
TCCAGAGCATGCTGGACGGCCTGCGCGTGCAAGTCTGGGAGCCACTGAAA
GCTGACTTTACGCGGTGGTGCGCCGAGAATCATCTCAGCGTGGATCCGAG
AAACCTTCTCTTGACTCTGGGTGAAGATTCTGCTGCCGAGCTAATGAAGC
GCATCACCAAGGAAGACGCCGCAAACCTTACAACAATGCTGCTGATTTAT
CTGCAATGCGACTTTGTGCCTCTGCGCTCGCAAATTCTGCGTGACAGTCT
GGTACACGAGTACAAGCTCAATCTTATCTCGCAGCAAATTCGTTTGACGA
TGGACAAGCGCCGCGGATTCAAGACTCTCGCATATCAAGGCGGCTCGTCC
GTGCCAGCGACCACGACATGGTTGCTACCCAAGGGAATGACGGAAGCCCT
GCAGTACTACAAGATGGTCTGCCGCCCACTTCTCTTGGGAGGCCTGTCGA
GCACATCGATGTTTCTGAGTCGCAAAGGCGAATCGCTTCAGCAGTCTGAG
ATCTATTCAATGTTCAATGGACTGGGGCGGCAATGGCTTGGAATCCCGCG
TTTTGGGACCCATATCTGCAGGTCCTTTGTGATTTCTCAAAAAGCACACT
CTGGAGAAATCAACGCGTCGAACCTCGTCGAGATTGGATCGCTGATGCAG
ACGAGCGCCGCCACGCTTCACACCAACTACGTGTCGCGCATCAACGGAAA
TTCTTCAGAGCAGCTTGCTGATCGCATTTTTGGCGGAGCTTCGAAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13985:105..1550+

>mRNA_P-wetherbeei_contig13985.1.1 ID=mRNA_P-wetherbeei_contig13985.1.1|Name=mRNA_P-wetherbeei_contig13985.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1329bp|location=Sequence derived from alignment at P-wetherbeei_contig13985:105..1550+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTTTTCTAATGACATTCTCGGTTTCGTCACTGAGGTCCTGGGGCGACC
GTGCCATCCATTCTCTGCCATCTTCCCGCTGCGGCGCTGCGAGTTTCTTG
CGTTACGGAAGCTTGGTGTTCCGGAGCACCTCCTTGAAGGCACGGCATCA
TCTCCGTCTGTCTGCTTTGGCGATCTTCTGAAGAACAAGGTCGGCTACAA
ACACGATACTGCATCTGGCATACTCCTAGACTGGGCATCATCAGACGACT
TCTTTCCGGAACTCTTTGTGCCCCATGCCATGCGGGCATACCGCACTCTG
CTCTCAAATGTCTTTGAGATGCTGCAGACCGTTCGAGGAGACATTTTTGC
GCTTTCCCCTCAAGACACGCACTTTTTTGGAGCTGATATCTCAACAAACG
CTCGCGACCCCCTTCGGTACAAGTTTCTGGAGTTTCTTTCCAAACTTAAA
GGGGTGTATGCCGTGCAGCGTTCACGTGCTCGGCGTCTTGCGGCCGTGAG
AGAATTCCGAGAGTCTGACGGATCCGGTAAAATTGAGCGAGGCCGCATGC
TCGATCCCGCCGAAGAAGAGTCTGGAAAACTGTTCCAGAGCATGCTGGAC
GGCCTGCGCGTGCAAGTCTGGGAGCCACTGAAAGCTGACTTTACGCGGTG
GTGCGCCGAGAATCATCTCAGCGTGGATCCGAGAAACCTTCTCTTGACTC
TGGGTGAAGATTCTGCTGCCGAGCTAATGAAGCGCATCACCAAGGAAGAC
GCCGCAAACCTTACAACAATGCTGCTGATTTATCTGCAATGCGACTTTGT
GCCTCTGCGCTCGCAAATTCTGCGTGACAGTCTGGTACACGAGTACAAGC
TCAATCTTATCTCGCAGCAAATTCGTTTGACGATGGACAAGCGCCGCGGA
TTCAAGACTCTCGCATATCAAGGCGGCTCGTCCGTGCCAGCGACCACGAC
ATGGTTGCTACCCAAGGGAATGACGGAAGCCCTGCAGTACTACAAGATGG
TCTGCCGCCCACTTCTCTTGGGAGGCCTGTCGAGCACATCGATGTTTCTG
AGTCGCAAAGGCGAATCGCTTCAGCAGTCTGAGATCTATTCAATGTTCAA
TGGACTGGGGCGGCAATGGCTTGGAATCCCGCGTTTTGGGACCCATATCT
GCAGGTCCTTTGTGATTTCTCAAAAAGCACACTCTGGAGAAATCAACGCG
TCGAACCTCGTCGAGATTGGATCGCTGATGCAGACGAGCGCCGCCACGCT
TCACACCAACTACGTGTCGCGCATCAACGGAAATTCTTCAGAGCAGCTTG
CTGATCGCATTTTTGGCGGAGCTTCGAAT
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