mRNA_P-wetherbeei_contig13974.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13974.2.1
Unique NamemRNA_P-wetherbeei_contig13974.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig13974.2.1 vs. uniprot
Match: D7FP11_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP11_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 3.920e-13
Identity = 36/81 (44.44%), Postives = 52/81 (64.20%), Query Frame = 1 
Query:    1 TNLLELIAVTSVWTGIEWYIWDDVPGLPNTTPRNILYVFGALPLLLATGTLFNQAGMVSPMALYKRVHTYVRHDETAPLLA 243
            T   EL  V   WTGIEWY+W+    +P++  R++ Y+   L +L+ TGT FN AG +SP+A  K+VH + RH+E  PLL+
Sbjct:  320 TTAAELTGVVFAWTGIEWYVWEG-DYIPDSALRDLGYIAVGLGILVGTGTFFNLAGTISPVAALKQVHQHNRHEEAMPLLS 399
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BLAST of mRNA_P-wetherbeei_contig13974.2.1 vs. uniprot
Match: A0A835YU36_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU36_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 3.660e-11
Identity = 37/79 (46.84%), Postives = 48/79 (60.76%), Query Frame = 1 
Query:    4 NLLELIAVTSVWTGIEWYIWDDVPGLPNTTPRNILYVFGALPLLLATGTLFNQAGMVSPMALYKRVHTYVRHDETAPLL 240
            N  ELIAV  +WTG EW+IWD+     +T  R+ LY      +LL TGT    AG+VSPMA+Y +VH  ++  E  PLL
Sbjct:  229 NGCELIAVVWLWTGCEWFIWDNYV-FQHTVLRDALYTLTGFVVLLLTGTFIALAGVVSPMAMYGKVHRQLQAHEVVPLL 306
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13974.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FP11_ECTSI3.920e-1344.44Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YU36_9STRA3.660e-1146.84Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13974contigP-wetherbeei_contig13974:572..1651 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1080
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-05_001820.1
Cds size792
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186004.002221-UTR-P-wetherbeei_contig13974:571..6911683186004.002221-UTR-P-wetherbeei_contig13974:571..691Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig13974 572..691 -
1683186004.0186055-UTR-P-wetherbeei_contig13974:1483..16511683186004.0186055-UTR-P-wetherbeei_contig13974:1483..1651Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig13974 1484..1651 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186004.0107372-CDS-P-wetherbeei_contig13974:691..14831683186004.0107372-CDS-P-wetherbeei_contig13974:691..1483Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13974 692..1483 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13974.2.1prot_P-wetherbeei_contig13974.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13974 692..1483 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13974.2.1

>prot_P-wetherbeei_contig13974.2.1 ID=prot_P-wetherbeei_contig13974.2.1|Name=mRNA_P-wetherbeei_contig13974.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=264bp
MVSPMALYKRVHTYVRHDETAPLLAGDADDSGGDGSEFEDGVDADRDFGD
DGDYGDYGDDGDFDAGSGRGGSLLGASGGSGATGGVGIGGGGGDDDHDGW
GVEMSPVRPSPCTRGNRRDGMSRLPPPAAAAMLAAAAGTSNSPGGAAVPH
RIDAMAAAASPAATSRLPTLRPPASPVSPPSLAGPRRASLRSSVAAAVAG
AFGGGTASVSRAPEEAPLVGSVADSEIDGGCRDGGGGRYNGSGEREMTDR
TTPQTAPHAGAES*
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mRNA from alignment at P-wetherbeei_contig13974:572..1651-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13974.2.1 ID=mRNA_P-wetherbeei_contig13974.2.1|Name=mRNA_P-wetherbeei_contig13974.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1080bp|location=Sequence derived from alignment at P-wetherbeei_contig13974:572..1651- (Phaeothamnion wetherbeei SAG_119_79)
ACGAACCTGCTGGAACTCATCGCCGTCACGAGCGTGTGGACGGGCATCGA
GTGGTATATCTGGGACGATGTTCCGGGGCTGCCCAACACGACTCCGCGGA
ACATATTGTACGTGTTCGGCGCGCTGCCGCTGCTCCTGGCGACGGGAACG
CTCTTCAACCAGGCGGGAATGGTGTCGCCAATGGCCCTCTACAAGCGCGT
TCACACGTACGTGCGGCACGACGAGACGGCCCCGCTGCTGGCGGGGGACG
CCGACGACAGCGGCGGCGACGGCAGCGAGTTCGAGGACGGTGTCGACGCC
GACCGCGACTTTGGGGACGACGGCGACTACGGCGATTACGGTGATGACGG
GGATTTTGACGCCGGCAGCGGCCGTGGCGGCAGCCTGCTGGGCGCTAGCG
GTGGCAGCGGCGCTACTGGCGGCGTCGGGATTGGTGGTGGTGGCGGCGAC
GACGACCATGACGGTTGGGGAGTGGAAATGTCTCCGGTTCGGCCGTCCCC
CTGCACGCGCGGAAACCGGCGCGATGGCATGAGCAGGCTACCGCCGCCGG
CGGCGGCGGCAATGTTAGCAGCAGCAGCGGGCACATCAAACTCACCAGGA
GGCGCTGCTGTGCCGCACAGGATAGATGCGATGGCGGCGGCGGCATCTCC
CGCGGCGACCTCGAGGTTGCCAACGTTGCGGCCGCCGGCATCTCCGGTGT
CGCCGCCATCGCTGGCGGGCCCCCGTCGCGCCAGCCTGCGCTCATCTGTC
GCGGCCGCCGTCGCCGGAGCGTTCGGCGGCGGCACGGCGTCTGTCTCGCG
GGCGCCAGAGGAGGCGCCCCTCGTGGGATCAGTTGCTGATAGCGAGATCG
ACGGTGGATGCCGGGACGGCGGCGGCGGGAGGTACAATGGAAGCGGCGAG
CGGGAAATGACGGACCGGACCACTCCCCAAACCGCGCCCCATGCTGGTGC
AGAGTCATGATTAGTACGGATTACGATACTTTACTTTACGACAGATTTGT
AGCTAGGCGATGTACACAGAAGGCTTGGAGGCGCCGAGTTTGGGCGCTCA
CGAGGAATGACAGAGCATGCGATATTGGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13974:572..1651-

>mRNA_P-wetherbeei_contig13974.2.1 ID=mRNA_P-wetherbeei_contig13974.2.1|Name=mRNA_P-wetherbeei_contig13974.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=792bp|location=Sequence derived from alignment at P-wetherbeei_contig13974:572..1651- (Phaeothamnion wetherbeei SAG_119_79)
ATGGTGTCGCCAATGGCCCTCTACAAGCGCGTTCACACGTACGTGCGGCA
CGACGAGACGGCCCCGCTGCTGGCGGGGGACGCCGACGACAGCGGCGGCG
ACGGCAGCGAGTTCGAGGACGGTGTCGACGCCGACCGCGACTTTGGGGAC
GACGGCGACTACGGCGATTACGGTGATGACGGGGATTTTGACGCCGGCAG
CGGCCGTGGCGGCAGCCTGCTGGGCGCTAGCGGTGGCAGCGGCGCTACTG
GCGGCGTCGGGATTGGTGGTGGTGGCGGCGACGACGACCATGACGGTTGG
GGAGTGGAAATGTCTCCGGTTCGGCCGTCCCCCTGCACGCGCGGAAACCG
GCGCGATGGCATGAGCAGGCTACCGCCGCCGGCGGCGGCGGCAATGTTAG
CAGCAGCAGCGGGCACATCAAACTCACCAGGAGGCGCTGCTGTGCCGCAC
AGGATAGATGCGATGGCGGCGGCGGCATCTCCCGCGGCGACCTCGAGGTT
GCCAACGTTGCGGCCGCCGGCATCTCCGGTGTCGCCGCCATCGCTGGCGG
GCCCCCGTCGCGCCAGCCTGCGCTCATCTGTCGCGGCCGCCGTCGCCGGA
GCGTTCGGCGGCGGCACGGCGTCTGTCTCGCGGGCGCCAGAGGAGGCGCC
CCTCGTGGGATCAGTTGCTGATAGCGAGATCGACGGTGGATGCCGGGACG
GCGGCGGCGGGAGGTACAATGGAAGCGGCGAGCGGGAAATGACGGACCGG
ACCACTCCCCAAACCGCGCCCCATGCTGGTGCAGAGTCATGA
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