mRNA_P-wetherbeei_contig13972.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13972.1.1
Unique NamemRNA_P-wetherbeei_contig13972.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig13972.1.1 vs. uniprot
Match: A0A0L0DXJ2_THETB (Mannosyltransferase n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DXJ2_THETB)

HSP 1 Score: 93.6 bits (231), Expect = 4.540e-20
Identity = 68/206 (33.01%), Postives = 95/206 (46.12%), Query Frame = 1
Query:    1 WERIMAIYGAVLATLLSPVLQSSKAKIRY---GDYVVFKHFTTGHYLTSLDGHLLNHVGGSVQQ-ITFGATNPDENSYWVIRSSNGHDPREHDGKEVKVGELIRIYHLATNLYLHSHSTASPKSIGAPPGEQQREVTA---SAHNNVQDNWTVANKEPYPFGTKWRFMHSDGAQYLHSHDRAVGVKGRSGTNEVTCCKDKNEDDFW 597
            W+ I     A LA  + PV      + R    G  +  +H +TG+ L S   H + +  GS QQ +T      D NS W +++  G+   +H G  +K G++IR+ H+ T  YLHSH   SP S       Q +EV+A   S  ++  DNW V     +  G K R  H D   YLHSH +A       G  EV     KN  +FW
Sbjct:    4 WQLIAVAIAATLALSVVPVQAEIDEEFRMVTCGSVIKLRHASTGYRLHS---HDIPYGSGSQQQSVTAHPAADDTNSLWTVKAGFGYPACKH-GDVIKSGDVIRLQHVNTKKYLHSHLHRSPLS-------QNQEVSAYGSSDQSDSGDNWIVEGAAKWLRGAKLRLKHKDTGAYLHSHRKAY-QNPIPGQLEVCGVPSKNSQNFW 197          
BLAST of mRNA_P-wetherbeei_contig13972.1.1 vs. uniprot
Match: UPI001FB17302 (stromal cell-derived factor 2-like protein n=1 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB17302)

HSP 1 Score: 82.0 bits (201), Expect = 1.180e-15
Identity = 63/193 (32.64%), Postives = 89/193 (46.11%), Query Frame = 1
Query:   49 SPVLQSSKA-KIRYGDYVVFKHFTTGHYLTSLDGHLLNHVGGSVQQITFG-ATNPDENSYWVIRSSNGHDPREHDGKEVKVGELIRIYHLATNLYLHSHSTASPKS----IGAPPGEQQREVTASAHNNVQDNWTV---ANKEPYPFGTKWRFMHSDGAQYLHSHDRAVGVKGRSGTNEVTCCKDKNEDDFWV 600
            +PV  +S+  +I YG  +   H  T   L S   H + +  GS QQ   G +T  D NSYW++R  N  D     G  +K G  IR+ H+ T  +LHSH  ASP S    +    GE +        ++  D W V    N + +  G + R  H D   YLHSHD+    +   G  EV   K+K  D+ W+
Sbjct:   23 TPVSAASEGVQITYGSVIKLMHEKTKFRLHS---HDVPYGSGSGQQSVTGFSTVEDSNSYWIVR--NAADKSAKQGDSIKSGSSIRLQHMKTRKWLHSHLHASPISGNLEVSCYGGENE--------SDTGDYWKVEIEGNGKTWRQGQRVRLHHVDTGGYLHSHDKKY-TRIAGGQQEVCGVKEKKADNVWL 201          
BLAST of mRNA_P-wetherbeei_contig13972.1.1 vs. uniprot
Match: A0A199UP54_ANACO (Stromal cell-derived factor 2-like protein n=4 Tax=Ananas comosus TaxID=4615 RepID=A0A199UP54_ANACO)

HSP 1 Score: 81.3 bits (199), Expect = 2.470e-15
Identity = 59/192 (30.73%), Postives = 83/192 (43.23%), Query Frame = 1
Query:   46 LSPVLQSSKAKIRYGDYVVFKHFTTGHYLTSLDGHLLNHVGGSVQQITFGATNPDE-NSYWVIRSSNGHDPREHDGKEVKVGELIRIYHLATNLYLHSHSTASPKSIGAPPGEQQREVTASAHNNVQDNWTVANKEPYPFGTKWR------FMHSDGAQYLHSHDRAVGVKGRSGTNEVTCCKDKNEDDFWV 600
            +S    +   +I YG  +   H  T   L S   H + +  GS QQ   G  N D+ NSYW++R +  HD  +  G  +K G +IR+ H+ T  +LHSH  ASP S          EV+    +   D       E    G  WR        H D   YLHSHD+    +   G  EV   ++K  D+ W+
Sbjct:   27 VSAAAAAESVEITYGSVIKLMHEKTKFRLHS---HDVPYGSGSGQQSVTGFPNVDDSNSYWIVRPT--HDSSDKQGDAIKSGTIIRLQHMKTRKWLHSHLHASPISGNL-------EVSCFGADGESDTGDYWRLEIEGSGKTWRQDQRVRLRHVDTGGYLHSHDKKY-TRIAGGQQEVCSVREKRPDNIWL 205          
BLAST of mRNA_P-wetherbeei_contig13972.1.1 vs. uniprot
Match: D7U863_VITVI (Uncharacterized protein n=2 Tax=Vitis TaxID=3603 RepID=D7U863_VITVI)

HSP 1 Score: 80.1 bits (196), Expect = 6.220e-15
Identity = 64/200 (32.00%), Postives = 91/200 (45.50%), Query Frame = 1
Query:   49 SPVLQSSKA-KIRYGDYVVFKHFTTGHYLTSLDGHLLNHVGGSVQQITFGATNPDE-NSYWVIRSSNGHDPREHDGKEVKVGELIRIYHLATNLYLHSHSTASPKSIGAPPGEQQREVTASAHNN-VQDNWTVANKEPYPFGTKW------RFMHSDGAQYLHSHDRAVGVKGRSGTNEVTCCKDKNEDDFWVLLLAKHL 621
            SPV  +S+  +I YG  +   H  T   L S   H + +  GS QQ      N D+ NSYW++R   G   ++  G  +K G +IR+ H+ T  +LHSH  ASP S     G  +        N+   DNW +   E    G  W      R +H D   YLHSHD+    +   G  EV   +DK  D+ W+ +   +L
Sbjct:   24 SPVYAASQGVEITYGSTIKLMHERTRFRLHS---HDVPYGSGSGQQSVTAFPNVDDSNSYWIVRPLLGSSSKQ--GDSIKSGTIIRLQHMRTRKWLHSHLHASPIS-----GNLEVSCYGEDDNSDTGDNWRL---EIEGSGKTWKQDQRVRLLHVDTGGYLHSHDKKY-TRIAGGQQEVCGVRDKRADNVWLAVEGVYL 209          
BLAST of mRNA_P-wetherbeei_contig13972.1.1 vs. uniprot
Match: UPI00064DB345 (stromal cell-derived factor 2-like protein n=1 Tax=Erythranthe guttata TaxID=4155 RepID=UPI00064DB345)

HSP 1 Score: 79.0 bits (193), Expect = 1.720e-14
Identity = 61/192 (31.77%), Postives = 86/192 (44.79%), Query Frame = 1
Query:   49 SPVLQSSKA-KIRYGDYVVFKHFTTGHYLTSLDGHLLNHVGGSVQQITFGATNPDE-NSYWVIRSSNGHDPREHDGKEVKVGELIRIYHLATNLYLHSHSTASPKSIGAPPGEQQREVTASAHNNVQDNWTVANKEPYPFGTKWR------FMHSDGAQYLHSHDRAVGVKGRSGTNEVTCCKDKNEDDFWV 600
            +PV  +S+  +I YG  +   H  T + L S   H + +  GS QQ   G  N D+ NSYW++RS+   D     G  +K G +IR+ H+ T  +LHSH  ASP S          EV+    +   D       E    G  WR        H D   YLHSHD+    +   G  EV   ++K  D+ W+
Sbjct:   23 APVAAASEGVQITYGSVIKLMHERTKYRLHS---HDVPYGSGSGQQSVTGFPNVDDANSYWIVRSTK--DSLAKQGDTIKGGTVIRLQHMRTRKWLHSHLHASPISSNL-------EVSCFGSDGESDTGDYWRLEIEGNGKTWRQDQRVRLHHVDTGGYLHSHDKKY-TRIAGGQQEVCGVREKRADNVWL 201          
BLAST of mRNA_P-wetherbeei_contig13972.1.1 vs. uniprot
Match: A0A1Q3AW31_CEPFO (MIR domain-containing protein n=1 Tax=Cephalotus follicularis TaxID=3775 RepID=A0A1Q3AW31_CEPFO)

HSP 1 Score: 78.6 bits (192), Expect = 2.710e-14
Identity = 58/183 (31.69%), Postives = 86/183 (46.99%), Query Frame = 1
Query:   76 KIRYGDYVVFKHFTTGHYLTSLDGHLLNHVGGSVQQITFGATNPDE-NSYWVIRSSNGHDPREHDGKEVKVGELIRIYHLATNLYLHSHSTASPKS----IGAPPGEQQREVTASAHNNVQDNWTV---ANKEPYPFGTKWRFMHSDGAQYLHSHDRAVGVKGRSGTNEVTCCKDKNEDDFWV 600
            +I YG  +   H  T   L S   H + +  GS QQ   G  N D+ NSYWV+R  +G   ++  G  +K G +IR+ H+ T  +LHSH  ASP S    +    GEQ+        ++  D W V    + + +    + R  H D   YLHSHD+    +   G  EV   ++K  D+ W+
Sbjct:   41 EITYGAVIKLMHEKTKFRLHS---HDVPYGSGSGQQSVTGFPNVDDSNSYWVVRPESGTPLKQ--GDTIKSGTIIRLQHMKTRKWLHSHLHASPISGNLEVSCFGGEQE--------SDTGDYWRVMIEGSGKTWKQNQRIRLQHIDTGGYLHSHDKKY-TRIAGGQQEVCGVREKRADNVWL 209          
BLAST of mRNA_P-wetherbeei_contig13972.1.1 vs. uniprot
Match: S8EEX8_9LAMI (Uncharacterized protein n=1 Tax=Genlisea aurea TaxID=192259 RepID=S8EEX8_9LAMI)

HSP 1 Score: 79.3 bits (194), Expect = 3.160e-14
Identity = 58/193 (30.05%), Postives = 89/193 (46.11%), Query Frame = 1
Query:   76 KIRYGDYVVFKHFTTGHYLTSLDGHLLNHVGGSVQQITFGATNPDE-NSYWVIRSSNGHDPREHDGKEVKVGELIRIYHLATNLYLHSHSTASPKS----IGAPPGEQQREVTASAHNNVQDNWTV---ANKEPYPFGTKWRFMHSDGAQYLHSHDRAVGVKGRSGTNEVTCCKDKNEDDFWVLLLAKHLKNF 630
            +I YG  +   H  T   L S   H + +  GS QQ   G    D+ NSYW+++ +   D     G  +K+G +IR+ H+ T  +LHSH  ASP S    +    G++Q        ++  D+W +    + + +    K R  H D A YLHSHD+    +   G  EV   +DK  D+ W+     +L  F
Sbjct:   94 QITYGSVIKLMHERTKFRLHS---HDVPYGSGSGQQSVTGFQGVDDANSYWIVKPTP--DSSAKQGDPIKIGSVIRLLHMRTRKWLHSHLHASPISGNMEVSCFGGDEQ--------SDTGDHWRLEIEGSGKTWQQDQKVRLQHVDTAGYLHSHDKKYS-RIAGGQQEVCGVRDKKADNIWLAAEGVYLPVF 272          
BLAST of mRNA_P-wetherbeei_contig13972.1.1 vs. uniprot
Match: A0A2G3CZD1_CAPCH (Stromal cell-derived factor 2-like protein n=4 Tax=Capsicum TaxID=4071 RepID=A0A2G3CZD1_CAPCH)

HSP 1 Score: 80.5 bits (197), Expect = 3.500e-14
Identity = 62/192 (32.29%), Postives = 86/192 (44.79%), Query Frame = 1
Query:   49 SPVLQSSKA-KIRYGDYVVFKHFTTGHYLTSLDGHLLNHVGGSVQQITFGATNPDE-NSYWVIRSSNGHDPREHDGKEVKVGELIRIYHLATNLYLHSHSTASPKSIGAPPGEQQREVTASAHNNVQDNWTVANKEPYPFGTKWR------FMHSDGAQYLHSHDRAVGVKGRSGTNEVTCCKDKNEDDFWV 600
            +PV  +S+  +I YG  +   H  T   L S   H + +  GS QQ   G    D+ NSYWV+RS++        G  +K G +IR+ H+ T  +LHSH  ASP S          EV+    +N  D       E    G  WR      F H D   YLHSHD+    +   G  EV   ++K  D+ W+
Sbjct:  213 TPVSAASEGVQITYGSTIKLMHEKTKFRLHS---HDVPYGSGSGQQSVTGFPGVDDANSYWVVRSTDS----SKQGDPIKSGSIIRLQHMKTRRWLHSHLHASPIS-------GNMEVSCFGDDNESDTGDYWRLEIEGSGKTWRQDQRIRFQHVDTGGYLHSHDKKY-TRIAGGQQEVCGVREKRADNVWL 389          
BLAST of mRNA_P-wetherbeei_contig13972.1.1 vs. uniprot
Match: A0A8J5F7I7_ZINOF (MIR domain-containing protein n=2 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5F7I7_ZINOF)

HSP 1 Score: 77.8 bits (190), Expect = 4.400e-14
Identity = 58/186 (31.18%), Postives = 84/186 (45.16%), Query Frame = 1
Query:   64 SSKAKIRYGDYVVFKHFTTGHYLTSLDGHLLNHVGGSVQQITFGATNP-DENSYWVIRSSNGHDPREHDGKEVKVGELIRIYHLATNLYLHSHSTASPKSIGAPPGEQQREVTASAHNNVQDNWTVANKEPYPFGTKW------RFMHSDGAQYLHSHDRAVGVKGRSGTNEVTCCKDKNEDDFWV 600
            S   +I YG  +   H  T H L S   H L +  GS QQ   G+ +  D NSYW++R       R+  G  ++ G +IR+ H+ T+ +LHSH  ASP S          EV+    ++  D       E    G  W      R +H D   YLHSH++    +   G  EV   +DK+ D+ W+
Sbjct:   27 SDAVEITYGSVLKLMHERTKHRLHS---HDLPYGSGSGQQSVTGSPDVGDSNSYWIVRPQPDSSTRQ--GDIIENGAVIRLQHMVTHAWLHSHLYASPLSGNL-------EVSCFGGDDQSDTGDFWRLEIEGSGKTWKTNQHVRLLHVDTNGYLHSHEKKFN-RIAGGQQEVCGVRDKHRDNVWL 199          
BLAST of mRNA_P-wetherbeei_contig13972.1.1 vs. uniprot
Match: A0A2Z7CEC3_9LAMI (Stromal cell-derived factor 2-like protein n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7CEC3_9LAMI)

HSP 1 Score: 77.8 bits (190), Expect = 4.560e-14
Identity = 60/192 (31.25%), Postives = 87/192 (45.31%), Query Frame = 1
Query:   49 SPVLQSSKA-KIRYGDYVVFKHFTTGHYLTSLDGHLLNHVGGSVQQITFGATNPDE-NSYWVIRSSNGHDPREHDGKEVKVGELIRIYHLATNLYLHSHSTASPKSIGAPPGEQQREVTASAHNNVQDNWTVANKEPYPFGTKWR------FMHSDGAQYLHSHDRAVGVKGRSGTNEVTCCKDKNEDDFWV 600
            +PV  +S+  +I YG  +   H  T   L S   H + +  GS QQ   G  N D+ NSYW++R     + ++  G  +K+G LIR+ H+ T  +LHSH  ASP S          EV+    +   D     + E    G  WR        H D   YLHSHD+    +   G  EV   ++K  D+ W+
Sbjct:   23 TPVSAASEGVQITYGSVIKLMHERTKFRLHS---HDVPYGSGSGQQSVTGFPNVDDSNSYWIVRPVPESNAKQ--GDTIKIGSLIRLQHMRTRKWLHSHLHASPISGNL-------EVSCFGTDGESDTGDYWSLEIEGSGKTWRQDQRVRLRHVDTGAYLHSHDKKY-TRIAGGQQEVCGVREKRADNVWL 201          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13972.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0L0DXJ2_THETB4.540e-2033.01Mannosyltransferase n=1 Tax=Thecamonas trahens ATC... [more]
UPI001FB173021.180e-1532.64stromal cell-derived factor 2-like protein n=1 Tax... [more]
A0A199UP54_ANACO2.470e-1530.73Stromal cell-derived factor 2-like protein n=4 Tax... [more]
D7U863_VITVI6.220e-1532.00Uncharacterized protein n=2 Tax=Vitis TaxID=3603 R... [more]
UPI00064DB3451.720e-1431.77stromal cell-derived factor 2-like protein n=1 Tax... [more]
A0A1Q3AW31_CEPFO2.710e-1431.69MIR domain-containing protein n=1 Tax=Cephalotus f... [more]
S8EEX8_9LAMI3.160e-1430.05Uncharacterized protein n=1 Tax=Genlisea aurea Tax... [more]
A0A2G3CZD1_CAPCH3.500e-1432.29Stromal cell-derived factor 2-like protein n=4 Tax... [more]
A0A8J5F7I7_ZINOF4.400e-1431.18MIR domain-containing protein n=2 Tax=Zingiber off... [more]
A0A2Z7CEC3_9LAMI4.560e-1431.25Stromal cell-derived factor 2-like protein n=1 Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13972contigP-wetherbeei_contig13972:1..633 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog529818.AMSG_02227T0
Preferred nameSDF2
PFAMsMIR
Model size633
Max annot lvl2759|Eukaryota
KEGG koko:K14805,ko:K15692
Hectar predicted targeting categorysignal peptide
GOsGO:0000030,GO:0002682,GO:0002684,GO:0003674,GO:0003824,GO:0004169,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006464,GO:0006486,GO:0006493,GO:0006508,GO:0006515,GO:0006807,GO:0006950,GO:0006952,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009605,GO:0009607,GO:0009617,GO:0009620,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0010941,GO:0012505,GO:0016020,GO:0016740,GO:0016757,GO:0016758,GO:0019538,GO:0019899,GO:0030163,GO:0031347,GO:0031349,GO:0031984,GO:0032991,GO:0033554,GO:0034645,GO:0034663,GO:0034976,GO:0035268,GO:0035269,GO:0035821,GO:0035966,GO:0035967,GO:0036211,GO:0036503,GO:0042175,GO:0042221,GO:0042742,GO:0042981,GO:0043067,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044003,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044403,GO:0044419,GO:0044421,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045088,GO:0045089,GO:0048518,GO:0048583,GO:0048584,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0050832,GO:0050896,GO:0051087,GO:0051117,GO:0051603,GO:0051701,GO:0051704,GO:0051707,GO:0051716,GO:0051787,GO:0051788,GO:0051817,GO:0052031,GO:0052033,GO:0052166,GO:0052167,GO:0052169,GO:0052173,GO:0052200,GO:0052255,GO:0052257,GO:0052305,GO:0052306,GO:0052308,GO:0052509,GO:0052510,GO:0052552,GO:0052553,GO:0052555,GO:0052556,GO:0052564,GO:0052572,GO:0065007,GO:0070085,GO:0070887,GO:0071218,GO:0071310,GO:0071704,GO:0071712,GO:0075136,GO:0080134,GO:0097502,GO:0098542,GO:0098827,GO:1901135,GO:1901137,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901698
Exons1
Evalue7.54e-19
EggNOG OGsCOG1928@1|root,KOG3358@2759|Eukaryota
Ec32 ortholog descriptionsimilar to Stromal cell-derived factor 2 precursor (SDF-2)
Ec32 orthologEc-11_001880.1
EC2.3.2.27,3.6.4.13
Descriptiondolichyl-phosphate-mannose-protein mannosyltransferase activity
Cds size621
COG categoryO
BRITEko00000,ko01000,ko03009,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186003.8996785-CDS-P-wetherbeei_contig13972:0..6211683186003.8996785-CDS-P-wetherbeei_contig13972:0..621Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13972 1..621 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186003.9112654-UTR-P-wetherbeei_contig13972:621..6331683186003.9112654-UTR-P-wetherbeei_contig13972:621..633Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig13972 622..633 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13972.1.1prot_P-wetherbeei_contig13972.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13972 1..621 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13972.1.1

>prot_P-wetherbeei_contig13972.1.1 ID=prot_P-wetherbeei_contig13972.1.1|Name=mRNA_P-wetherbeei_contig13972.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=207bp
MAIYGAVLATLLSPVLQSSKAKIRYGDYVVFKHFTTGHYLTSLDGHLLNH
VGGSVQQITFGATNPDENSYWVIRSSNGHDPREHDGKEVKVGELIRIYHL
ATNLYLHSHSTASPKSIGAPPGEQQREVTASAHNNVQDNWTVANKEPYPF
GTKWRFMHSDGAQYLHSHDRAVGVKGRSGTNEVTCCKDKNEDDFWVLLLA
KHLKNF*
back to top

mRNA from alignment at P-wetherbeei_contig13972:1..633-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13972.1.1 ID=mRNA_P-wetherbeei_contig13972.1.1|Name=mRNA_P-wetherbeei_contig13972.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=633bp|location=Sequence derived from alignment at P-wetherbeei_contig13972:1..633- (Phaeothamnion wetherbeei SAG_119_79)
TGGGAGCGCATCATGGCGATCTACGGCGCTGTTTTGGCAACGCTACTGAG CCCTGTTTTGCAGTCGAGTAAGGCAAAAATTCGTTACGGTGATTATGTCG TCTTCAAGCATTTCACGACAGGCCATTACCTCACCTCTCTAGACGGCCAC CTGCTTAATCATGTTGGTGGTTCTGTGCAGCAGATAACTTTCGGTGCGAC CAACCCTGACGAGAATTCATACTGGGTGATTCGTTCGAGCAATGGACACG ACCCACGCGAACACGACGGCAAGGAGGTGAAGGTGGGCGAACTCATACGA ATCTACCATTTGGCGACAAACCTGTATCTGCACAGCCATTCCACAGCCTC GCCAAAGTCGATTGGAGCACCTCCCGGTGAACAGCAGAGGGAAGTCACGG CCTCAGCCCACAATAATGTCCAAGATAATTGGACCGTTGCGAATAAAGAG CCGTATCCATTTGGGACGAAATGGAGGTTCATGCATTCGGACGGCGCTCA ATACCTGCATTCCCACGACCGCGCCGTCGGCGTCAAAGGACGCTCTGGCA CAAACGAAGTCACTTGCTGCAAGGATAAGAACGAAGACGACTTCTGGGTG CTGCTTCTGGCCAAGCACCTCAAGAACTTCTAG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig13972:1..633-

>mRNA_P-wetherbeei_contig13972.1.1 ID=mRNA_P-wetherbeei_contig13972.1.1|Name=mRNA_P-wetherbeei_contig13972.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=621bp|location=Sequence derived from alignment at P-wetherbeei_contig13972:1..633- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGATCTACGGCGCTGTTTTGGCAACGCTACTGAGCCCTGTTTTGCA
GTCGAGTAAGGCAAAAATTCGTTACGGTGATTATGTCGTCTTCAAGCATT
TCACGACAGGCCATTACCTCACCTCTCTAGACGGCCACCTGCTTAATCAT
GTTGGTGGTTCTGTGCAGCAGATAACTTTCGGTGCGACCAACCCTGACGA
GAATTCATACTGGGTGATTCGTTCGAGCAATGGACACGACCCACGCGAAC
ACGACGGCAAGGAGGTGAAGGTGGGCGAACTCATACGAATCTACCATTTG
GCGACAAACCTGTATCTGCACAGCCATTCCACAGCCTCGCCAAAGTCGAT
TGGAGCACCTCCCGGTGAACAGCAGAGGGAAGTCACGGCCTCAGCCCACA
ATAATGTCCAAGATAATTGGACCGTTGCGAATAAAGAGCCGTATCCATTT
GGGACGAAATGGAGGTTCATGCATTCGGACGGCGCTCAATACCTGCATTC
CCACGACCGCGCCGTCGGCGTCAAAGGACGCTCTGGCACAAACGAAGTCA
CTTGCTGCAAGGATAAGAACGAAGACGACTTCTGGGTGCTGCTTCTGGCC
AAGCACCTCAAGAACTTCTAG
back to top