mRNA_P-wetherbeei_contig1397.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1397.4.1
Unique NamemRNA_P-wetherbeei_contig1397.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1397.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1397contigP-wetherbeei_contig1397:5141..6584 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FGX3
PFAMsBiotin_lipoyl
Model size722
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.25e-05
EggNOG OGsCOG0508@1|root,KOG0557@2759|Eukaryota
Ec32 ortholog descriptionSingle hybrid motif
Ec32 orthologEc-11_000970.1
Descriptiondihydrolipoyllysine-residue acetyltransferase activity
Cds size282
COG categoryC
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186003.7255893-UTR-P-wetherbeei_contig1397:5140..52651683186003.7255893-UTR-P-wetherbeei_contig1397:5140..5265Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1397 5141..5265 -
1683186003.7593517-UTR-P-wetherbeei_contig1397:6269..65841683186003.7593517-UTR-P-wetherbeei_contig1397:6269..6584Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1397 6270..6584 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186003.7341707-CDS-P-wetherbeei_contig1397:5265..53731683186003.7341707-CDS-P-wetherbeei_contig1397:5265..5373Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1397 5266..5373 -
1683186003.7415874-CDS-P-wetherbeei_contig1397:5821..59491683186003.7415874-CDS-P-wetherbeei_contig1397:5821..5949Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1397 5822..5949 -
1683186003.7517977-CDS-P-wetherbeei_contig1397:6223..62691683186003.7517977-CDS-P-wetherbeei_contig1397:6223..6269Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1397 6224..6269 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1397.4.1prot_P-wetherbeei_contig1397.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1397 5266..6269 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1397.4.1

>prot_P-wetherbeei_contig1397.4.1 ID=prot_P-wetherbeei_contig1397.4.1|Name=mRNA_P-wetherbeei_contig1397.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=94bp
MQVLNHLLKDGKLDEEAASVLLALARKRDEELMRAFDGALEGDAYDGAKF
DAGFFLIQAKGIAQEKAEEREKAIKEEAAEAVAAQAPAAGKEG*
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mRNA from alignment at P-wetherbeei_contig1397:5141..6584-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1397.4.1 ID=mRNA_P-wetherbeei_contig1397.4.1|Name=mRNA_P-wetherbeei_contig1397.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1444bp|location=Sequence derived from alignment at P-wetherbeei_contig1397:5141..6584- (Phaeothamnion wetherbeei SAG_119_79)
GTTTTCCGGGGGCAGGGTGTGTCCACACTTCATGTTCCTTGTATTTCCGC
TAGGGCCGTCTTCACCTCGCCCAGCCGCGGACTATTGTTCCCCTCCATCT
GGAACGGAGCAGAGCCACGCGTGTTCCATCAAAATTAGCTGTCCACATTT
AGATTACGTCCAGCTTCGAACCTGACAGTCCAAGACCTAACTCTCTCACC
TTCGGCATTTCGTGTTTGATGGCGTCGGCGGTGGCTGTATTGGGGACGAT
GTTGGCGGCGACGCCGGCATACTGGCCGGTTGGTCTGTCGATTGGTACCC
GGCAACGAGCAGGTGATGCAAGTGCTCAATCATCTATTGAAGGACGGCAA
GCTCGACGAAGGTAAGTTTGCTTTTCGCGTTCTGGTCCTCTCTGATGCCA
CTGAGGTCCAATGCCAGACGTACTGCAGCGCCCCAACTGCCAGCGCGTAT
ACCGTCTCATCATCATTGCCTCCGGTGTCGTCGCTGCCGCCGCGGCCGCT
GTCCTGGACTAACCGCCTACCACTGCCTCTGCCTCCCTTCTTTCTACCGC
TGCGTCATTTTCATCACCCCCGGCCGCCACCACCGCCGCCATCACCGCTT
CCACGGACGTGGTCTGCCGCAACCGCGGCTGTTAGAGGCGGCGTCGGTGC
TGCTGGCCCTGGCGCGGAAGCGGGACGAGGAGCTTATGCGGGCCTTCGAC
GGTGCGCTTGAGGGTGACGCCTACGACGGGGCAAAGTTCGATGCCGGCTT
CTTCCTCATTCAGGTAAGCATGAATACGACCCAGAGCAGCTGTGTGTATC
GGAGAGGCGTATCGAAGAGAGGTATGCGGGCGGAATATGTGATGGCAGCG
CAACGTGTGTCATCTCAAAGGAGTTATGTGGTTTAGATATCAAAAGGTGA
AGGGGAAGAGCGGTGGCTGGTTGGGAGGCCAAGCGGCGGTGGCTGCAAGG
CCGTACAACGCCAGGATAGATTTGTCTAGCTCCCTTTTCTTTCGCGTTAT
TCTTCGGAGGGAGACGCTGAGGATGGGCTGGCACTGGATGCTTTAATCTT
TGCGGGTGGGTAACAATGGGATGAAACAAACCTCAGAGCAGCAGAGGCCG
CGATTGTGCTCTGAGTCTGATCTTAGCTTTCCTGCTGTGATGGATTGATT
GTTCTGCTCACATTACGCTGATAAGTAGTCCCTGTCTTCTCTTCCTCCCT
GCACCTCGCAGGCAAAAGGCATCGCCCAGGAGAAGGCAGAGGAGCGAGAA
AAGGCCATCAAAGAGGAGGCTGCTGAAGCAGTGGCGGCGCAGGCGCCTGC
CGCCGGGAAGGAGGGGTAGATTCGAGGGTGCTGAGGCCAATGCGACCGTC
GGAACTGAGCTGATGCGGAAGCCAGAGATAGAGGAGAACCTGAAGACGCA
TAGCAGTTTCATTCGGTTTCAACAGTTTCGGTGCAATTTCCCTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1397:5141..6584-

>mRNA_P-wetherbeei_contig1397.4.1 ID=mRNA_P-wetherbeei_contig1397.4.1|Name=mRNA_P-wetherbeei_contig1397.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=282bp|location=Sequence derived from alignment at P-wetherbeei_contig1397:5141..6584- (Phaeothamnion wetherbeei SAG_119_79)
ATGCAAGTGCTCAATCATCTATTGAAGGACGGCAAGCTCGACGAAGAGGC
GGCGTCGGTGCTGCTGGCCCTGGCGCGGAAGCGGGACGAGGAGCTTATGC
GGGCCTTCGACGGTGCGCTTGAGGGTGACGCCTACGACGGGGCAAAGTTC
GATGCCGGCTTCTTCCTCATTCAGGCAAAAGGCATCGCCCAGGAGAAGGC
AGAGGAGCGAGAAAAGGCCATCAAAGAGGAGGCTGCTGAAGCAGTGGCGG
CGCAGGCGCCTGCCGCCGGGAAGGAGGGGTAG
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