mRNA_P-wetherbeei_contig13954.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13954.1.1
Unique NamemRNA_P-wetherbeei_contig13954.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13954.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13954contigP-wetherbeei_contig13954:156..1771 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1479
Hectar predicted targeting categoryother localisation
Exons2
Cds size1479
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186003.300649-CDS-P-wetherbeei_contig13954:155..4871683186003.300649-CDS-P-wetherbeei_contig13954:155..487Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13954 156..487 -
1683186003.3103828-CDS-P-wetherbeei_contig13954:624..17711683186003.3103828-CDS-P-wetherbeei_contig13954:624..1771Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13954 625..1771 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13954.1.1prot_P-wetherbeei_contig13954.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13954 156..1771 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13954.1.1

>prot_P-wetherbeei_contig13954.1.1 ID=prot_P-wetherbeei_contig13954.1.1|Name=mRNA_P-wetherbeei_contig13954.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=493bp
SPSRSEDSGAGVGGSDGRHHDDAQSVGSGGGGGSSYGRYGPPGGGAGSAG
GIEPANGHGIDDYEDYIDGYAAEVYEPDGPSRRSPPLPRRSPAPGPHDAA
GVAAAAAAVAAGGVVVEYQGMRSRHHSHDGSVGLQSAEAVGYDGRGPDPR
TGYRRGGGGGIVGAASGAQRHGGGMPSGPGPGVPPGMQRRSSAPIIVNRG
QPGGYGGGRGGGSGDIGYEVYDPYEGGGGGGSSGPQHPSMDAPSPRYDPH
SQPHPQQQQQQQQRQQHPPSPRQSPPLQPQPSPSLEQQNQRGHGMGPRAH
SMPYRGFPGSGGGGGGMDGANDRRAGMLGGMRPGNDMRRIGSGGLGTGSS
GDRYSGGPYRERLAFSDSDSNGRGSGVGAGGSAAADTAGAAKPSLAATAA
AVAPARGRVRQRRWRWRWRQQQLSRSSVLAGCSAVRPGLLGAGVDAAAAA
TATGGDAAAAGDADWYGAGGSGGSGGDLAGRGCRGPERRRRER
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mRNA from alignment at P-wetherbeei_contig13954:156..1771-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13954.1.1 ID=mRNA_P-wetherbeei_contig13954.1.1|Name=mRNA_P-wetherbeei_contig13954.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1616bp|location=Sequence derived from alignment at P-wetherbeei_contig13954:156..1771- (Phaeothamnion wetherbeei SAG_119_79)
AGTCCCAGCCGCAGTGAGGACAGCGGGGCCGGCGTCGGCGGCTCGGACGG
TCGGCACCACGACGACGCTCAATCTGTCGGCAGCGGCGGCGGCGGCGGGA
GCAGTTACGGCCGCTACGGGCCGCCCGGCGGCGGCGCCGGTAGCGCCGGC
GGCATAGAACCGGCCAACGGCCATGGCATCGATGATTACGAAGATTACAT
CGACGGTTACGCCGCCGAAGTCTACGAACCCGACGGTCCATCGCGGCGCT
CCCCCCCCCTGCCGCGACGGTCCCCTGCCCCAGGCCCGCACGATGCGGCG
GGCGTGGCGGCGGCAGCGGCGGCGGTGGCGGCCGGAGGGGTGGTGGTGGA
GTACCAGGGGATGCGGTCGCGCCACCACTCGCATGACGGAAGCGTTGGCC
TGCAGTCGGCAGAGGCCGTCGGCTACGACGGGCGCGGCCCGGATCCCCGG
ACGGGCTACCGTCGCGGCGGCGGTGGCGGAATCGTCGGGGCGGCATCGGG
GGCGCAGCGACACGGCGGCGGGATGCCGTCAGGCCCTGGGCCGGGAGTGC
CGCCGGGCATGCAGCGCCGGAGCTCCGCCCCGATCATCGTGAACCGGGGA
CAGCCCGGTGGTTACGGCGGTGGCCGTGGCGGCGGTAGCGGCGACATCGG
TTACGAAGTGTACGATCCGTACGAAGGCGGTGGCGGCGGCGGCAGCAGTG
GCCCCCAGCATCCATCAATGGATGCGCCATCGCCGCGATACGACCCGCAC
AGCCAGCCACATCCGCAGCAGCAGCAGCAACAGCAGCAGCGGCAGCAGCA
CCCGCCGTCACCGCGGCAGTCGCCACCGCTGCAGCCGCAGCCATCCCCGT
CGCTGGAGCAGCAGAACCAGCGAGGGCACGGCATGGGTCCACGGGCGCAC
AGCATGCCGTACCGCGGCTTTCCGGGCAGCGGCGGCGGCGGCGGTGGCAT
GGATGGCGCGAATGACAGGCGAGCCGGGATGCTCGGTGGCATGCGGCCCG
GCAACGACATGCGCCGTATCGGCAGCGGCGGTCTGGGAACCGGCAGCAGT
GGCGACAGATACAGCGGCGGTCCTTACAGGGAACGTCTTGCGTTCTCCGA
TTCCGACAGCAATGGCCGCGGGAGCGGCGTTGGCGCTGGCGGCAGCGGCG
GGAGCAGCAGCGGCGGCGGCTACGGGGCCGGCGAAGGCTACAGGCCGGAC
GTGGAGCAACTTGCTTCTGACGGGGCCGCGGCCTTGGCGGCCAGGGCCCC
GATGCCAGCGGCGTCATGCTCCATGCGGCCGCCGCCGCTGCCGACACAGC
AGGTGCAGCAAAGCCATCACTCGCAGCCACCGCCGCTGCAGTCGCCCCCG
CACGTGGCCGGGTACGGCAACGGCGTTGGCGATGGCGCTGGCGCCAGCAG
CAGCTATCCCGGAGCTCCGTACTGGCAGGCTGCTCCGCCGTACGCCCCGG
GCTACTCGGAGCGGGAGTCGACGCCGCCGCTGCCGCCACAGCAACAGGCG
GCGATGCGGCAGCAGCCGGCGATGCCGATTGGTATGGGGCCGGCGGAAGC
GGCGGCAGCGGCGGCGACCTCGCCGGGCGTGGGTGCCGCGGACCCGAGCG
GCGGCGCCGTGAGCGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13954:156..1771-

>mRNA_P-wetherbeei_contig13954.1.1 ID=mRNA_P-wetherbeei_contig13954.1.1|Name=mRNA_P-wetherbeei_contig13954.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1479bp|location=Sequence derived from alignment at P-wetherbeei_contig13954:156..1771- (Phaeothamnion wetherbeei SAG_119_79)
AGTCCCAGCCGCAGTGAGGACAGCGGGGCCGGCGTCGGCGGCTCGGACGG
TCGGCACCACGACGACGCTCAATCTGTCGGCAGCGGCGGCGGCGGCGGGA
GCAGTTACGGCCGCTACGGGCCGCCCGGCGGCGGCGCCGGTAGCGCCGGC
GGCATAGAACCGGCCAACGGCCATGGCATCGATGATTACGAAGATTACAT
CGACGGTTACGCCGCCGAAGTCTACGAACCCGACGGTCCATCGCGGCGCT
CCCCCCCCCTGCCGCGACGGTCCCCTGCCCCAGGCCCGCACGATGCGGCG
GGCGTGGCGGCGGCAGCGGCGGCGGTGGCGGCCGGAGGGGTGGTGGTGGA
GTACCAGGGGATGCGGTCGCGCCACCACTCGCATGACGGAAGCGTTGGCC
TGCAGTCGGCAGAGGCCGTCGGCTACGACGGGCGCGGCCCGGATCCCCGG
ACGGGCTACCGTCGCGGCGGCGGTGGCGGAATCGTCGGGGCGGCATCGGG
GGCGCAGCGACACGGCGGCGGGATGCCGTCAGGCCCTGGGCCGGGAGTGC
CGCCGGGCATGCAGCGCCGGAGCTCCGCCCCGATCATCGTGAACCGGGGA
CAGCCCGGTGGTTACGGCGGTGGCCGTGGCGGCGGTAGCGGCGACATCGG
TTACGAAGTGTACGATCCGTACGAAGGCGGTGGCGGCGGCGGCAGCAGTG
GCCCCCAGCATCCATCAATGGATGCGCCATCGCCGCGATACGACCCGCAC
AGCCAGCCACATCCGCAGCAGCAGCAGCAACAGCAGCAGCGGCAGCAGCA
CCCGCCGTCACCGCGGCAGTCGCCACCGCTGCAGCCGCAGCCATCCCCGT
CGCTGGAGCAGCAGAACCAGCGAGGGCACGGCATGGGTCCACGGGCGCAC
AGCATGCCGTACCGCGGCTTTCCGGGCAGCGGCGGCGGCGGCGGTGGCAT
GGATGGCGCGAATGACAGGCGAGCCGGGATGCTCGGTGGCATGCGGCCCG
GCAACGACATGCGCCGTATCGGCAGCGGCGGTCTGGGAACCGGCAGCAGT
GGCGACAGATACAGCGGCGGTCCTTACAGGGAACGTCTTGCGTTCTCCGA
TTCCGACAGCAATGGCCGCGGGAGCGGCGTTGGCGCTGGCGGCAGCGCCG
CTGCCGACACAGCAGGTGCAGCAAAGCCATCACTCGCAGCCACCGCCGCT
GCAGTCGCCCCCGCACGTGGCCGGGTACGGCAACGGCGTTGGCGATGGCG
CTGGCGCCAGCAGCAGCTATCCCGGAGCTCCGTACTGGCAGGCTGCTCCG
CCGTACGCCCCGGGCTACTCGGAGCGGGAGTCGACGCCGCCGCTGCCGCC
ACAGCAACAGGCGGCGATGCGGCAGCAGCCGGCGATGCCGATTGGTATGG
GGCCGGCGGAAGCGGCGGCAGCGGCGGCGACCTCGCCGGGCGTGGGTGCC
GCGGACCCGAGCGGCGGCGCCGTGAGCGC
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