mRNA_P-wetherbeei_contig13945.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13945.1.1
Unique NamemRNA_P-wetherbeei_contig13945.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig13945.1.1 vs. uniprot
Match: A0A835YS93_9STRA (CG-1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS93_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 1.570e-12
Identity = 41/105 (39.05%), Postives = 60/105 (57.14%), Query Frame = 1 
Query:  202 LQEIAARRRLTPDEVVEIIVNYGRYGLTLADAAGSDKPSSGTLVLCHRDHVTRVKNDGIVWMKRSGTNKVREDQSKARSAAGVSIRVCFTRSVVPPEIARRRYTL 516
            ++ +A  R LT  E++ I+  Y  YG+ L     +  P SG L+LC    V+ ++ DGI W+KR  T KVRED    +    V++R  +T +V PP + RRRYTL
Sbjct:   48 VRHVAKCRWLTLQELLVILSRYHAYGIPLV-TCHARPPESGALLLCATKDVSALRQDGIEWVKRPNTKKVREDHVSLKLNGAVAVRGSYTHAVHPPTLHRRRYTL 151
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BLAST of mRNA_P-wetherbeei_contig13945.1.1 vs. uniprot
Match: A0A7S2VVV0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2VVV0_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 1.690e-10
Identity = 41/107 (38.32%), Postives = 58/107 (54.21%), Query Frame = 1 
Query:  208 EIAAR----RRLTPDEVVEIIVNYGRYGLTLADAAGSDKPSSGTLVLCHRDHVTRVKNDGIVWMKRSGTNKVREDQSKARSAAGVSIRVCFTRSVVPPEIARRRYTL 516
            +IAAR    R LT +E+ +I++N   YG  ++ +  S  PSSG L L  R      K+DGI+W+K+  ++KVRED  K R      I  C+  S V   + RR Y L
Sbjct:   16 DIAARKAHTRWLTANELEDILLNTKDYGDCISTSRPSSPPSSGALYLYDRSQTKNYKDDGIIWIKKRNSHKVREDHVKLRMDGVNRISGCYVHSAVTETMHRRAYHL 122
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BLAST of mRNA_P-wetherbeei_contig13945.1.1 vs. uniprot
Match: A0A067DQI3_CITSI (CG-1 domain-containing protein n=1 Tax=Citrus sinensis TaxID=2711 RepID=A0A067DQI3_CITSI)

HSP 1 Score: 53.5 bits (127), Expect = 6.840e-5
Identity = 36/115 (31.30%), Postives = 57/115 (49.57%), Query Frame = 1 
Query:  214 AARRRLTPDEVVEIIVNYGRYGLTLADAAGSDKPSSGTLVLCHRDHVTRVKNDGIVWMKRSGTNKVREDQSKARSAAGVSIRVCFTRSVVPPEIARRRYTLEAPPPAGKLCLLHY 558
            A  R L P+EV+ ++ N+ ++GLT    A   KP SG+L L +   +   + DG +W K   T  V E   +  +A G+++   +      P   RR Y++ A    G L L+HY
Sbjct:   14 AKSRWLKPEEVLFVLQNHEKFGLT---EAPPQKPPSGSLFLFNTRILDFFREDGHIWRKMKNTRIVSEAHERLETADGLALDCYYAFGKQNPNFQRRVYSMAAYL-YGHLVLVHY 124
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13945.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835YS93_9STRA1.570e-1239.05CG-1 domain-containing protein n=1 Tax=Tribonema m... [more]
A0A7S2VVV0_9STRA1.690e-1038.32Hypothetical protein (Fragment) n=1 Tax=Triparma p... [more]
A0A067DQI3_CITSI6.840e-531.30CG-1 domain-containing protein n=1 Tax=Citrus sine... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13945contigP-wetherbeei_contig13945:587..1644 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FNU1
PFAMsAnk_5,CG-1,IQ
Model size706
Max annot lvl2759|Eukaryota
KEGG koko:K17458
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.8e-08
EggNOG OGsCOG0666@1|root,KOG0505@2759|Eukaryota
Descriptionpositive regulation of myosin-light-chain-phosphatase activity
Cds size705
COG categoryO
BRITEko00000,ko01009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186002.9805398-CDS-P-wetherbeei_contig13945:586..8831683186002.9805398-CDS-P-wetherbeei_contig13945:586..883Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13945 587..883 -
1683186002.991166-CDS-P-wetherbeei_contig13945:1236..16441683186002.991166-CDS-P-wetherbeei_contig13945:1236..1644Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13945 1237..1644 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13945.1.1prot_P-wetherbeei_contig13945.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13945 587..1644 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13945.1.1

>prot_P-wetherbeei_contig13945.1.1 ID=prot_P-wetherbeei_contig13945.1.1|Name=mRNA_P-wetherbeei_contig13945.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=235bp
MSRRGRIGETGKGSLSLKKEALSRWRGARHMASAVAVPQNTDFSSEEGDT
FDSIFTGGDGCNHSPRLLQEIAARRRLTPDEVVEIIVNYGRYGLTLADAA
GSDKPSSGTLVLCHRDHVTRVKNDGIVWMKRSGTNKVREDQSKARSAAGV
SIRVCFTRSVVPPEIARRRYTLEAPPPAGKLCLLHYFVETTKSATDYRRL
LAAGSAAAAASGDPILALVPIPPSVAAVAKAAARA
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mRNA from alignment at P-wetherbeei_contig13945:587..1644-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13945.1.1 ID=mRNA_P-wetherbeei_contig13945.1.1|Name=mRNA_P-wetherbeei_contig13945.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1058bp|location=Sequence derived from alignment at P-wetherbeei_contig13945:587..1644- (Phaeothamnion wetherbeei SAG_119_79)
ATGTCGCGGCGGGGCAGAATCGGCGAAACGGGTAAGGGAAGTCTCTCGCT
GAAGAAAGAAGCCTTATCTCGCTGGCGTGGTGCGCGCCACATGGCGTCTG
CGGTGGCCGTACCGCAAAACACGGACTTTTCAAGTGAAGAGGGAGATACC
TTCGACTCGATTTTCACGGGGGGGGACGGTTGCAACCACAGCCCTCGCCT
GCTGCAGGAGATCGCGGCGAGACGCCGCCTTACGCCGGACGAAGTGGTCG
AAATTATCGTTAACTATGGACGATACGGCCTCACATTGGCGGACGCAGCA
GGGTCAGACAAGCCCTCCAGCGGCACTCTCGTCCTCTGCCATCGCGATCA
CGTCACGCGCGTGAAGAACGATGGCATCGTGTGGATGAAGCGCAGCGGCA
CCAATAAAGTGAGTCTTACTCTCCTTCCTACAAGCTGATGGCGGATCTGC
ATTGGATATTTTCCAGCAAGAGGATGTAAGTGTTTGCTGAGCTGCATGCA
TATACGATTGTGGATACATGCAAATGCTTTCCCAGAAACGTAAATATCTT
GTTCGGGCGCCTTTGCAGAGAGCTTTCTCTCTCCTTTTGACGCCGTTGAG
TTCTCCTTGAGATTTTGTGTGGTGGCGTCTTCTCATTCAAATACGCTGCG
CCATCGTGTCGCGATTTCTCGACGCAGCCCGCACCGAACCATAATGCCTT
CTCCTCTCCCCAACTCATGTTCTGAACGTCAACTTCGAGTCCAACTGCTT
CCCCTCCGCAGGTCCGCGAAGACCAATCCAAGGCCCGCAGCGCCGCCGGC
GTATCGATCCGCGTCTGCTTCACACGCAGCGTCGTGCCGCCGGAGATCGC
CCGCCGCCGCTACACTCTCGAGGCGCCGCCGCCGGCCGGCAAGCTCTGCC
TGCTCCATTACTTTGTGGAGACAACAAAGTCCGCCACGGACTACCGGCGG
CTGCTCGCGGCTGGCAGTGCCGCCGCCGCCGCGTCGGGCGACCCGATCCT
CGCGCTGGTGCCGATCCCACCGTCGGTGGCGGCCGTGGCGAAGGCAGCGG
CCCGCGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13945:587..1644-

>mRNA_P-wetherbeei_contig13945.1.1 ID=mRNA_P-wetherbeei_contig13945.1.1|Name=mRNA_P-wetherbeei_contig13945.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=705bp|location=Sequence derived from alignment at P-wetherbeei_contig13945:587..1644- (Phaeothamnion wetherbeei SAG_119_79)
ATGTCGCGGCGGGGCAGAATCGGCGAAACGGGTAAGGGAAGTCTCTCGCT
GAAGAAAGAAGCCTTATCTCGCTGGCGTGGTGCGCGCCACATGGCGTCTG
CGGTGGCCGTACCGCAAAACACGGACTTTTCAAGTGAAGAGGGAGATACC
TTCGACTCGATTTTCACGGGGGGGGACGGTTGCAACCACAGCCCTCGCCT
GCTGCAGGAGATCGCGGCGAGACGCCGCCTTACGCCGGACGAAGTGGTCG
AAATTATCGTTAACTATGGACGATACGGCCTCACATTGGCGGACGCAGCA
GGGTCAGACAAGCCCTCCAGCGGCACTCTCGTCCTCTGCCATCGCGATCA
CGTCACGCGCGTGAAGAACGATGGCATCGTGTGGATGAAGCGCAGCGGCA
CCAATAAAGTCCGCGAAGACCAATCCAAGGCCCGCAGCGCCGCCGGCGTA
TCGATCCGCGTCTGCTTCACACGCAGCGTCGTGCCGCCGGAGATCGCCCG
CCGCCGCTACACTCTCGAGGCGCCGCCGCCGGCCGGCAAGCTCTGCCTGC
TCCATTACTTTGTGGAGACAACAAAGTCCGCCACGGACTACCGGCGGCTG
CTCGCGGCTGGCAGTGCCGCCGCCGCCGCGTCGGGCGACCCGATCCTCGC
GCTGGTGCCGATCCCACCGTCGGTGGCGGCCGTGGCGAAGGCAGCGGCCC
GCGCG
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