mRNA_P-wetherbeei_contig13939.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig13939.2.1 vs. uniprot
Match: A0A6I3WX87_9ACTN (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A6I3WX87_9ACTN) HSP 1 Score: 125 bits (313), Expect = 1.960e-32 Identity = 68/176 (38.64%), Postives = 101/176 (57.39%), Query Frame = 1
Query: 25 ITDPRAVELLFDLRASRMLAPFISSEHTLSTASVALGVAPSTLAHWIPKFVRTGLLVPTRVEARKGAPMRWYRTPGASLFVPIAAVPAATRMEFLGAGRQRVLDLFVAGMDERVANDASTGVSFTSTGPVGVDVDL-EPAPAQRDEPWTEFWGTLDLTRSQAHALAEELAAVVSRY 549
IT P A+ +L +LR+ R L PF+ HTLS+A+ ALG ST+A+WIP+FVR GLLV E R G PM YR P L V A +P +R+ L GR R+L F G+DE + + + ++F+ +G G +++ E A R P+ + W T LT + EL A+++++
Sbjct: 11 ITSPAAISMLANLRSLRYLLPFMRDAHTLSSAAAALGRPTSTVAYWIPRFVRVGLLVHLGDEQRAGMPMPRYRAPARQLTVAYAKIPFDSRVALLDEGRMRMLRRFFDGLDEAIEDTKAFSLAFSGSGEFGTSIEMIESDGATRARPYADGWMTFHLTSQEVLEFTGELHALLAKF 186
BLAST of mRNA_P-wetherbeei_contig13939.2.1 vs. uniprot
Match: A0A4V3WGT4_9DEIO (Uncharacterized protein n=1 Tax=Deinococcus sp. KSM4-11 TaxID=2568654 RepID=A0A4V3WGT4_9DEIO) HSP 1 Score: 72.0 bits (175), Expect = 4.260e-12 Identity = 58/193 (30.05%), Postives = 83/193 (43.01%), Query Frame = 1
Query: 25 ITDPRAVELLFDLRASRMLAPFISSEHTLSTASVALGVAPSTLAHWIPKFVRTGLLVPTRVEARKGAPMRWYRTPGASLFVPIAAVPAATRMEFLGAGR----QRVLDLFVAGMDERVANDASTGVSFTSTGPVGVDVDLEPAPAQ--------RDEPWTEF-WGTLDLTRSQAHALAEELAAVVSRYRALEG 564
+TDP AV+L + L + EH+ S + L + + H + + V GL +RVEAR+G P+R YR + VP A P + + +G +R L V V N+ G+ G V VD+ P + D P WG L LTR A A+ EL A+ +RY A G
Sbjct: 8 VTDPAAVKLFMEASMMVTLEHLMLGEHSASHLARLLHAPLNAVHHRLRRLVAAGLAYESRVEARRGRPIRHYRATSDAYLVPYDATPLTSVEDLVGLHETGFARRFLHAVVEAGRSLVVNERDIGLRVFRDGDA-VSVDITPRAGEFTLDEFLAPDSPVLLLNWGELRLTREDAKAMQRELHALHARYAARHG 199
BLAST of mRNA_P-wetherbeei_contig13939.2.1 vs. uniprot
Match: A0A1U7NZ40_9DEIO (Uncharacterized protein n=4 Tax=Deinococcus TaxID=1298 RepID=A0A1U7NZ40_9DEIO) HSP 1 Score: 72.0 bits (175), Expect = 4.400e-12 Identity = 58/192 (30.21%), Postives = 88/192 (45.83%), Query Frame = 1
Query: 25 ITDPRAVELLFDLRASRMLAPFISSEHTLSTASVALGVAPSTLAHWIPKFVRTGLLVPTRVEARKGAPMRWYRTPGASLFVPIAAVPAATRMEFLGAGRQ----RVLDLFVAGMDERVANDASTGVS-FTSTGPVGVDVDLEPAPAQR------DEPWTEF-WGTLDLTRSQAHALAEELAAVVSRYRALEG 564
+T P AV++ R +LA + +E ++ + +L + + H + + +R GL+ TR+EAR+G P+R YR + VP A P + E +G Q R L V V+++ G+ F G V DV Q D P WGTL L + A AL EL+ + +RY AL G
Sbjct: 8 VTAPDAVKVFLSGRDLPVLAALMQAEWAVAPLAASLHLPLNATHHRVRRLLRLGLVRETRLEARRGRPIRHYRASSEAYLVPYHATPLGSLEELVGVYEQDFTARFLHAVVQAAFPLVSDEREIGLRVFLDGGEVSFDVTPTAGAFQYADLLRPDRPALLLNWGTLHLDSADAKALQHELSELHARYAALHG 199
BLAST of mRNA_P-wetherbeei_contig13939.2.1 vs. uniprot
Match: A0A511N9R9_9DEIO (Uncharacterized protein n=2 Tax=Deinococcus cellulosilyticus TaxID=401558 RepID=A0A511N9R9_9DEIO) HSP 1 Score: 61.6 bits (148), Expect = 3.120e-8 Identity = 32/100 (32.00%), Postives = 51/100 (51.00%), Query Frame = 1
Query: 10 QDRCVITDPRAVELLFDLRASRMLAPFISSEHTLSTASVALGVAPSTLAHWIPKFVRTGLLVPTRVEARKGAPMRWYRTPGASLFVPIAAVPAATRMEFL 309
+ R + DP A L ++R + PF+ E +L A+ L ++ S L +W+ + + GL+ TR+E R+G P++ YR FVP A T E L
Sbjct: 12 KSRREVRDPEAAAFLTQPGSARYIEPFLGQECSLKDAAETLQISMSGLFYWLERMLALGLVEITRIEQRRGRPIKHYRATAEEFFVPFRMTRAGTYEEML 111
BLAST of mRNA_P-wetherbeei_contig13939.2.1 vs. uniprot
Match: UPI00068BFEEA (transcriptional regulator n=1 Tax=Deinococcus misasensis TaxID=392413 RepID=UPI00068BFEEA) HSP 1 Score: 57.8 bits (138), Expect = 7.150e-7 Identity = 47/177 (26.55%), Postives = 79/177 (44.63%), Query Frame = 1
Query: 34 PRAVELLFDLRASRMLAPFISSEHTLSTASVALGVAPSTLAHWIPKFVRTGLLVPTRVEARKGAPMRWYRTPGASLFVPIAAVPAATRMEFLGAGRQRVLDLFVAGMDE-RVANDASTGV--SFTSTGPV-----GVDVDLEPAPAQRDEPWTEFWGTLDLTRSQAHALAEELAAVV 540
P A L + R + PF+ E ++ A+ L ++ S + +W+ K + L+ TR+E R+G P++ YR FVP A A T E L + D + G+ + R A+ A G+ S +G + +D E +P+ P W T LT QA + + ++
Sbjct: 16 PDAAAFLAQPASVRYIKPFLGRECSVKEAARELNISMSGMMYWLEKMLALELIEVTRIEERRGRPIKHYRAVAEEFFVPFALTRAGTHDEMLHEWEKPQHDALMKGIAKAREAHMAQWGILHSRQESGVLRSVFTALDGHQEVSPS--GPPVLSGWITAHLTPEQAKVFQQRMMDIL 190
BLAST of mRNA_P-wetherbeei_contig13939.2.1 vs. uniprot
Match: A0A246BEV0_9DEIO (Uncharacterized protein n=8 Tax=Deinococcus TaxID=1298 RepID=A0A246BEV0_9DEIO) HSP 1 Score: 56.2 bits (134), Expect = 2.510e-6 Identity = 51/191 (26.70%), Postives = 79/191 (41.36%), Query Frame = 1
Query: 34 PRAVELLFDLRASRMLAPFISSEHTLSTASVALGVAPSTLAHWIPKFVRTGLLVPTRVEARKGAPMRWYRTPGASLFVP--------IAAVPAATRMEFLGAGRQRVLDLFVAGM----DERVANDASTGVSFTSTGPVGVDVDLEPAPAQRDEPWTEFWGTLDLTRSQAHALAEELAAVVSRYRALEGGP 570
P A L + + +L ++ E T + + A G A + H + + + GL+ TR+E R+G P+R YR +L +P + A+ + F RQ V+ V + D V G P D++ T WG L LTR A AL +L +++RY A GGP
Sbjct: 11 PHAARLALNPAYTDLLRLLMTREWTAAPLAAAAGQALNAAHHRLGRLLEAGLIRVTRLERRRGRPLRHYRAVSDALLIPYHLTSLGSLEALISLHEDAFSDRFRQAVVQAGVPLVRREEDIAVRLYRHAGGVVMDVTPTAEHFDMDDLLRPEAPALTVDWGVLHLTREDAKALQRDLHDLLARYAA-RGGP 200
BLAST of mRNA_P-wetherbeei_contig13939.2.1 vs. uniprot
Match: C1D055_DEIDV (Uncharacterized protein n=2 Tax=Deinococcus TaxID=1298 RepID=C1D055_DEIDV) HSP 1 Score: 52.4 bits (124), Expect = 6.030e-5 Identity = 49/194 (25.26%), Postives = 78/194 (40.21%), Query Frame = 1
Query: 25 ITDPRAVELLFDLRASRMLAPFISSEHTLSTASVALGVAPSTLAHWIPKFVRTGLLVPTRVEARKGAPMRWYRTPGASLFVPIAAVPAATRMEFL----GAGRQRVLDLFVAGMDERVANDASTGVSFTSTGP-VGVDV-------DLEPAPAQRDEPWTEFWGTLDLTRSQAHALAEELAAVVSRYRALEGGP 570
+ DP A +L + +L + E +++ + A G + + + V GL+ TR+E R+G P+R YR + +P + + + G + R V + V + + TG V D+ DL + T WG L LTR A AL EL + +RY A GGP
Sbjct: 8 VRDPFAAQLCLSPEYTLVLQHLMRCEWSVAPLAAACGRPVNATHRRVRRLVTAGLVAETRLEPRRGRPVRHYRAVSDAFLIPYHLTALGSLEDLISLHEGTFQTRFHHAVVHAGVKLVQREQDIALRLYRTGEEVSFDITPRAEAFDLADLLKETGPALTVDWGHLQLTREDAKALQRELHELRARY-ARRGGP 200 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13939.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig13939.2.1 >prot_P-wetherbeei_contig13939.2.1 ID=prot_P-wetherbeei_contig13939.2.1|Name=mRNA_P-wetherbeei_contig13939.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=190bp MTVQDRCVITDPRAVELLFDLRASRMLAPFISSEHTLSTASVALGVAPSTback to top mRNA from alignment at P-wetherbeei_contig13939:1020..1589+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig13939.2.1 ID=mRNA_P-wetherbeei_contig13939.2.1|Name=mRNA_P-wetherbeei_contig13939.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=570bp|location=Sequence derived from alignment at P-wetherbeei_contig13939:1020..1589+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig13939:1020..1589+ >mRNA_P-wetherbeei_contig13939.2.1 ID=mRNA_P-wetherbeei_contig13939.2.1|Name=mRNA_P-wetherbeei_contig13939.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=570bp|location=Sequence derived from alignment at P-wetherbeei_contig13939:1020..1589+ (Phaeothamnion wetherbeei SAG_119_79)back to top |