mRNA_P-wetherbeei_contig13939.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13939.2.1
Unique NamemRNA_P-wetherbeei_contig13939.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig13939.2.1 vs. uniprot
Match: A0A6I3WX87_9ACTN (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A6I3WX87_9ACTN)

HSP 1 Score: 125 bits (313), Expect = 1.960e-32
Identity = 68/176 (38.64%), Postives = 101/176 (57.39%), Query Frame = 1
Query:   25 ITDPRAVELLFDLRASRMLAPFISSEHTLSTASVALGVAPSTLAHWIPKFVRTGLLVPTRVEARKGAPMRWYRTPGASLFVPIAAVPAATRMEFLGAGRQRVLDLFVAGMDERVANDASTGVSFTSTGPVGVDVDL-EPAPAQRDEPWTEFWGTLDLTRSQAHALAEELAAVVSRY 549
            IT P A+ +L +LR+ R L PF+   HTLS+A+ ALG   ST+A+WIP+FVR GLLV    E R G PM  YR P   L V  A +P  +R+  L  GR R+L  F  G+DE + +  +  ++F+ +G  G  +++ E   A R  P+ + W T  LT  +      EL A+++++
Sbjct:   11 ITSPAAISMLANLRSLRYLLPFMRDAHTLSSAAAALGRPTSTVAYWIPRFVRVGLLVHLGDEQRAGMPMPRYRAPARQLTVAYAKIPFDSRVALLDEGRMRMLRRFFDGLDEAIEDTKAFSLAFSGSGEFGTSIEMIESDGATRARPYADGWMTFHLTSQEVLEFTGELHALLAKF 186          
BLAST of mRNA_P-wetherbeei_contig13939.2.1 vs. uniprot
Match: A0A4V3WGT4_9DEIO (Uncharacterized protein n=1 Tax=Deinococcus sp. KSM4-11 TaxID=2568654 RepID=A0A4V3WGT4_9DEIO)

HSP 1 Score: 72.0 bits (175), Expect = 4.260e-12
Identity = 58/193 (30.05%), Postives = 83/193 (43.01%), Query Frame = 1
Query:   25 ITDPRAVELLFDLRASRMLAPFISSEHTLSTASVALGVAPSTLAHWIPKFVRTGLLVPTRVEARKGAPMRWYRTPGASLFVPIAAVPAATRMEFLGAGR----QRVLDLFVAGMDERVANDASTGVSFTSTGPVGVDVDLEPAPAQ--------RDEPWTEF-WGTLDLTRSQAHALAEELAAVVSRYRALEG 564
            +TDP AV+L  +      L   +  EH+ S  +  L    + + H + + V  GL   +RVEAR+G P+R YR    +  VP  A P  +  + +G       +R L   V      V N+   G+     G   V VD+ P   +         D P     WG L LTR  A A+  EL A+ +RY A  G
Sbjct:    8 VTDPAAVKLFMEASMMVTLEHLMLGEHSASHLARLLHAPLNAVHHRLRRLVAAGLAYESRVEARRGRPIRHYRATSDAYLVPYDATPLTSVEDLVGLHETGFARRFLHAVVEAGRSLVVNERDIGLRVFRDGDA-VSVDITPRAGEFTLDEFLAPDSPVLLLNWGELRLTREDAKAMQRELHALHARYAARHG 199          
BLAST of mRNA_P-wetherbeei_contig13939.2.1 vs. uniprot
Match: A0A1U7NZ40_9DEIO (Uncharacterized protein n=4 Tax=Deinococcus TaxID=1298 RepID=A0A1U7NZ40_9DEIO)

HSP 1 Score: 72.0 bits (175), Expect = 4.400e-12
Identity = 58/192 (30.21%), Postives = 88/192 (45.83%), Query Frame = 1
Query:   25 ITDPRAVELLFDLRASRMLAPFISSEHTLSTASVALGVAPSTLAHWIPKFVRTGLLVPTRVEARKGAPMRWYRTPGASLFVPIAAVPAATRMEFLGAGRQ----RVLDLFVAGMDERVANDASTGVS-FTSTGPVGVDVDLEPAPAQR------DEPWTEF-WGTLDLTRSQAHALAEELAAVVSRYRALEG 564
            +T P AV++    R   +LA  + +E  ++  + +L +  +   H + + +R GL+  TR+EAR+G P+R YR    +  VP  A P  +  E +G   Q    R L   V      V+++   G+  F   G V  DV       Q       D P     WGTL L  + A AL  EL+ + +RY AL G
Sbjct:    8 VTAPDAVKVFLSGRDLPVLAALMQAEWAVAPLAASLHLPLNATHHRVRRLLRLGLVRETRLEARRGRPIRHYRASSEAYLVPYHATPLGSLEELVGVYEQDFTARFLHAVVQAAFPLVSDEREIGLRVFLDGGEVSFDVTPTAGAFQYADLLRPDRPALLLNWGTLHLDSADAKALQHELSELHARYAALHG 199          
BLAST of mRNA_P-wetherbeei_contig13939.2.1 vs. uniprot
Match: A0A511N9R9_9DEIO (Uncharacterized protein n=2 Tax=Deinococcus cellulosilyticus TaxID=401558 RepID=A0A511N9R9_9DEIO)

HSP 1 Score: 61.6 bits (148), Expect = 3.120e-8
Identity = 32/100 (32.00%), Postives = 51/100 (51.00%), Query Frame = 1
Query:   10 QDRCVITDPRAVELLFDLRASRMLAPFISSEHTLSTASVALGVAPSTLAHWIPKFVRTGLLVPTRVEARKGAPMRWYRTPGASLFVPIAAVPAATRMEFL 309
            + R  + DP A   L    ++R + PF+  E +L  A+  L ++ S L +W+ + +  GL+  TR+E R+G P++ YR      FVP     A T  E L
Sbjct:   12 KSRREVRDPEAAAFLTQPGSARYIEPFLGQECSLKDAAETLQISMSGLFYWLERMLALGLVEITRIEQRRGRPIKHYRATAEEFFVPFRMTRAGTYEEML 111          
BLAST of mRNA_P-wetherbeei_contig13939.2.1 vs. uniprot
Match: UPI00068BFEEA (transcriptional regulator n=1 Tax=Deinococcus misasensis TaxID=392413 RepID=UPI00068BFEEA)

HSP 1 Score: 57.8 bits (138), Expect = 7.150e-7
Identity = 47/177 (26.55%), Postives = 79/177 (44.63%), Query Frame = 1
Query:   34 PRAVELLFDLRASRMLAPFISSEHTLSTASVALGVAPSTLAHWIPKFVRTGLLVPTRVEARKGAPMRWYRTPGASLFVPIAAVPAATRMEFLGAGRQRVLDLFVAGMDE-RVANDASTGV--SFTSTGPV-----GVDVDLEPAPAQRDEPWTEFWGTLDLTRSQAHALAEELAAVV 540
            P A   L    + R + PF+  E ++  A+  L ++ S + +W+ K +   L+  TR+E R+G P++ YR      FVP A   A T  E L    +   D  + G+ + R A+ A  G+  S   +G +      +D   E +P+    P    W T  LT  QA    + +  ++
Sbjct:   16 PDAAAFLAQPASVRYIKPFLGRECSVKEAARELNISMSGMMYWLEKMLALELIEVTRIEERRGRPIKHYRAVAEEFFVPFALTRAGTHDEMLHEWEKPQHDALMKGIAKAREAHMAQWGILHSRQESGVLRSVFTALDGHQEVSPS--GPPVLSGWITAHLTPEQAKVFQQRMMDIL 190          
BLAST of mRNA_P-wetherbeei_contig13939.2.1 vs. uniprot
Match: A0A246BEV0_9DEIO (Uncharacterized protein n=8 Tax=Deinococcus TaxID=1298 RepID=A0A246BEV0_9DEIO)

HSP 1 Score: 56.2 bits (134), Expect = 2.510e-6
Identity = 51/191 (26.70%), Postives = 79/191 (41.36%), Query Frame = 1
Query:   34 PRAVELLFDLRASRMLAPFISSEHTLSTASVALGVAPSTLAHWIPKFVRTGLLVPTRVEARKGAPMRWYRTPGASLFVP--------IAAVPAATRMEFLGAGRQRVLDLFVAGM----DERVANDASTGVSFTSTGPVGVDVDLEPAPAQRDEPWTEFWGTLDLTRSQAHALAEELAAVVSRYRALEGGP 570
            P A  L  +   + +L   ++ E T +  + A G A +   H + + +  GL+  TR+E R+G P+R YR    +L +P        + A+ +     F    RQ V+   V  +    D  V      G       P     D++          T  WG L LTR  A AL  +L  +++RY A  GGP
Sbjct:   11 PHAARLALNPAYTDLLRLLMTREWTAAPLAAAAGQALNAAHHRLGRLLEAGLIRVTRLERRRGRPLRHYRAVSDALLIPYHLTSLGSLEALISLHEDAFSDRFRQAVVQAGVPLVRREEDIAVRLYRHAGGVVMDVTPTAEHFDMDDLLRPEAPALTVDWGVLHLTREDAKALQRDLHDLLARYAA-RGGP 200          
BLAST of mRNA_P-wetherbeei_contig13939.2.1 vs. uniprot
Match: C1D055_DEIDV (Uncharacterized protein n=2 Tax=Deinococcus TaxID=1298 RepID=C1D055_DEIDV)

HSP 1 Score: 52.4 bits (124), Expect = 6.030e-5
Identity = 49/194 (25.26%), Postives = 78/194 (40.21%), Query Frame = 1
Query:   25 ITDPRAVELLFDLRASRMLAPFISSEHTLSTASVALGVAPSTLAHWIPKFVRTGLLVPTRVEARKGAPMRWYRTPGASLFVPIAAVPAATRMEFL----GAGRQRVLDLFVAGMDERVANDASTGVSFTSTGP-VGVDV-------DLEPAPAQRDEPWTEFWGTLDLTRSQAHALAEELAAVVSRYRALEGGP 570
            + DP A +L      + +L   +  E +++  + A G   +     + + V  GL+  TR+E R+G P+R YR    +  +P       +  + +    G  + R     V    + V  +    +    TG  V  D+       DL     +     T  WG L LTR  A AL  EL  + +RY A  GGP
Sbjct:    8 VRDPFAAQLCLSPEYTLVLQHLMRCEWSVAPLAAACGRPVNATHRRVRRLVTAGLVAETRLEPRRGRPVRHYRAVSDAFLIPYHLTALGSLEDLISLHEGTFQTRFHHAVVHAGVKLVQREQDIALRLYRTGEEVSFDITPRAEAFDLADLLKETGPALTVDWGHLQLTREDAKALQRELHELRARY-ARRGGP 200          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13939.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6I3WX87_9ACTN1.960e-3238.64Uncharacterized protein n=2 Tax=root TaxID=1 RepID... [more]
A0A4V3WGT4_9DEIO4.260e-1230.05Uncharacterized protein n=1 Tax=Deinococcus sp. KS... [more]
A0A1U7NZ40_9DEIO4.400e-1230.21Uncharacterized protein n=4 Tax=Deinococcus TaxID=... [more]
A0A511N9R9_9DEIO3.120e-832.00Uncharacterized protein n=2 Tax=Deinococcus cellul... [more]
UPI00068BFEEA7.150e-726.55transcriptional regulator n=1 Tax=Deinococcus misa... [more]
A0A246BEV0_9DEIO2.510e-626.70Uncharacterized protein n=8 Tax=Deinococcus TaxID=... [more]
C1D055_DEIDV6.030e-525.26Uncharacterized protein n=2 Tax=Deinococcus TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13939contigP-wetherbeei_contig13939:1020..1589 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1121382.JQKG01000080_gene896
PFAMsHTH_20
Model size570
Max annot lvl2|Bacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.43e-16
EggNOG OGs2DN0P@1|root,32USB@2|Bacteria
Cds size570
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186002.748377-CDS-P-wetherbeei_contig13939:1019..15891683186002.748377-CDS-P-wetherbeei_contig13939:1019..1589Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13939 1020..1589 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13939.2.1prot_P-wetherbeei_contig13939.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13939 1020..1589 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13939.2.1

>prot_P-wetherbeei_contig13939.2.1 ID=prot_P-wetherbeei_contig13939.2.1|Name=mRNA_P-wetherbeei_contig13939.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=190bp
MTVQDRCVITDPRAVELLFDLRASRMLAPFISSEHTLSTASVALGVAPST
LAHWIPKFVRTGLLVPTRVEARKGAPMRWYRTPGASLFVPIAAVPAATRM
EFLGAGRQRVLDLFVAGMDERVANDASTGVSFTSTGPVGVDVDLEPAPAQ
RDEPWTEFWGTLDLTRSQAHALAEELAAVVSRYRALEGGP
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mRNA from alignment at P-wetherbeei_contig13939:1020..1589+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13939.2.1 ID=mRNA_P-wetherbeei_contig13939.2.1|Name=mRNA_P-wetherbeei_contig13939.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=570bp|location=Sequence derived from alignment at P-wetherbeei_contig13939:1020..1589+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACCGTTCAGGATCGATGTGTGATCACCGATCCGCGCGCCGTCGAGCT GCTCTTCGATCTCCGCGCCAGCCGGATGCTGGCGCCGTTCATCAGCAGTG AGCACACCCTGTCGACGGCATCGGTCGCGCTCGGCGTCGCGCCGAGCACG CTGGCCCATTGGATCCCGAAGTTCGTGCGCACCGGGTTGCTCGTGCCGAC CCGCGTCGAGGCGCGCAAGGGTGCACCGATGCGCTGGTACCGCACGCCTG GGGCGTCACTGTTCGTGCCGATCGCTGCTGTCCCGGCAGCGACGCGCATG GAGTTCCTCGGCGCCGGTCGCCAGCGCGTGCTCGACCTGTTCGTGGCCGG CATGGACGAACGAGTTGCGAACGACGCGTCGACGGGTGTCTCGTTCACCT CGACCGGCCCGGTCGGCGTCGACGTCGATCTCGAACCGGCTCCGGCGCAA CGCGACGAGCCGTGGACCGAATTCTGGGGCACGCTCGACCTGACCCGCTC GCAGGCCCACGCGCTCGCCGAGGAGCTCGCCGCGGTGGTCAGTCGCTACC GCGCGCTGGAGGGTGGCCCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13939:1020..1589+

>mRNA_P-wetherbeei_contig13939.2.1 ID=mRNA_P-wetherbeei_contig13939.2.1|Name=mRNA_P-wetherbeei_contig13939.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=570bp|location=Sequence derived from alignment at P-wetherbeei_contig13939:1020..1589+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACCGTTCAGGATCGATGTGTGATCACCGATCCGCGCGCCGTCGAGCT
GCTCTTCGATCTCCGCGCCAGCCGGATGCTGGCGCCGTTCATCAGCAGTG
AGCACACCCTGTCGACGGCATCGGTCGCGCTCGGCGTCGCGCCGAGCACG
CTGGCCCATTGGATCCCGAAGTTCGTGCGCACCGGGTTGCTCGTGCCGAC
CCGCGTCGAGGCGCGCAAGGGTGCACCGATGCGCTGGTACCGCACGCCTG
GGGCGTCACTGTTCGTGCCGATCGCTGCTGTCCCGGCAGCGACGCGCATG
GAGTTCCTCGGCGCCGGTCGCCAGCGCGTGCTCGACCTGTTCGTGGCCGG
CATGGACGAACGAGTTGCGAACGACGCGTCGACGGGTGTCTCGTTCACCT
CGACCGGCCCGGTCGGCGTCGACGTCGATCTCGAACCGGCTCCGGCGCAA
CGCGACGAGCCGTGGACCGAATTCTGGGGCACGCTCGACCTGACCCGCTC
GCAGGCCCACGCGCTCGCCGAGGAGCTCGCCGCGGTGGTCAGTCGCTACC
GCGCGCTGGAGGGTGGCCCG
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