mRNA_P-wetherbeei_contig13937.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13937.1.1
Unique NamemRNA_P-wetherbeei_contig13937.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig13937.1.1 vs. uniprot
Match: D8LDN2_ECTSI (General transcription and DNA repair factor IIH helicase subunit XPD n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDN2_ECTSI)

HSP 1 Score: 246 bits (629), Expect = 1.390e-74
Identity = 114/146 (78.08%), Postives = 134/146 (91.78%), Query Frame = 1 
Query:    1 MRFEIDGLDVFFPYDYLYKEQYEYMVELKRALDAKGHCLLEMPTGTGKTVCLISLITSYQFSHPEMGKFIYCTRTVPEMVKCVEELKRVMSYRASELRAEDKPILALCLSSRRNLCINERVMRESDREAVDSACRNMTASWVRQRA 438
            MR ++DGLDVFFPYD++Y EQY+YM+ELKR+LDAKGHCLLEMPTGTGKTVCLISLITSYQF+HPE+GK IYCTRTVPEM+KC+EELKRV+ YR  +L  E + +LALCLSSRRNLCI+ERV+ ESDREAVD ACR+MTASWVR++A
Sbjct:    1 MRLDLDGLDVFFPYDFMYPEQYDYMLELKRSLDAKGHCLLEMPTGTGKTVCLISLITSYQFAHPEVGKLIYCTRTVPEMMKCIEELKRVIGYRKDQLGPEGEKVLALCLSSRRNLCIHERVIEESDREAVDGACRDMTASWVRKKA 146
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BLAST of mRNA_P-wetherbeei_contig13937.1.1 vs. uniprot
Match: K8YZX4_NANGC (General transcription and DNA repair factor IIH helicase subunit XPD (Fragment) n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YZX4_NANGC)

HSP 1 Score: 245 bits (626), Expect = 1.550e-73
Identity = 116/145 (80.00%), Postives = 133/145 (91.72%), Query Frame = 1 
Query:    1 MRFEIDGLDVFFPYDYLYKEQYEYMVELKRALDAKGHCLLEMPTGTGKTVCLISLITSYQFSHPEMGKFIYCTRTVPEMVKCVEELKRVMSYRASELRAEDKPILALCLSSRRNLCINERVMRESDREAVDSACRNMTASWVRQR 435
            +RF++DGLD+FFPYD LY+EQY YM+ELKRALDAKGHCLLEMPTGTGKTVCLISLITSYQF+HPE+GK IYCTRTVPEMVKCVEE+++V+ YR   + AE   +LA+CLSSRRNLCI+ERVM ESDREAVDSACR+MTASWVRQR
Sbjct:    2 VRFDLDGLDLFFPYDRLYEEQYNYMLELKRALDAKGHCLLEMPTGTGKTVCLISLITSYQFAHPEVGKLIYCTRTVPEMVKCVEEVRKVIDYRVKCIGAEGGKVLAVCLSSRRNLCIHERVMEESDREAVDSACRSMTASWVRQR 146
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BLAST of mRNA_P-wetherbeei_contig13937.1.1 vs. uniprot
Match: A0A482RW16_9ARCH (Helicase ATP-binding domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RW16_9ARCH)

HSP 1 Score: 222 bits (565), Expect = 1.750e-69
Identity = 103/146 (70.55%), Postives = 123/146 (84.25%), Query Frame = 1 
Query:    1 MRFEIDGLDVFFPYDYLYKEQYEYMVELKRALDAKGHCLLEMPTGTGKTVCLISLITSYQFSHPEMGKFIYCTRTVPEMVKCVEELKRVMSYRASELRAEDKPILALCLSSRRNLCINERVMRESDREAVDSACRNMTASWVRQRA 438
            M+F ++GL+VFFPYDY+YKEQY+YM+ LKRA+DAKGH LLEMPTGTGKTVCLISLITSYQF +P+ GK IYCTRTVPEM KC++E+K+V+ YR   L  E   +LALCLSSRRN+CI+ RV  ESDRE VD+ CR+MTASWVR  A
Sbjct:   22 MKFNLEGLEVFFPYDYMYKEQYDYMLNLKRAIDAKGHALLEMPTGTGKTVCLISLITSYQFQYPQTGKLIYCTRTVPEMAKCMDEIKKVIEYRQKLLGPEGGRVLALCLSSRRNMCIHPRVQEESDRETVDTKCRDMTASWVRASA 167
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BLAST of mRNA_P-wetherbeei_contig13937.1.1 vs. uniprot
Match: A0A7R9U4D1_9STRA (General transcription and DNA repair factor IIH helicase subunit XPD n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U4D1_9STRA)

HSP 1 Score: 230 bits (586), Expect = 7.920e-68
Identity = 110/146 (75.34%), Postives = 131/146 (89.73%), Query Frame = 1 
Query:    1 MRFEIDGLDVFFPYDYLYKEQYEYMVELKRALDAKGHCLLEMPTGTGKTVCLISLITSYQFSHPEMGKFIYCTRTVPEMVKCVEELKRVMSYRASELRAEDKPILALCLSSRRNLCINERVMRESDREAVDSACRNMTASWVRQRA 438
            MRF ++ +DVFFPY  +Y+EQ++YMVELKRAL+A GH  LEMPTGTGKTVCL+SLITS QF+ PEMGKFIYCTRTVPEMVKCVEELKRV++YRA  + AE + ILALCLSSRRN+CI++RV+ ESDREAVD+ACR+MTASWVR+RA
Sbjct:   45 MRFRLEDVDVFFPYPSVYREQFDYMVELKRALEAPGHAALEMPTGTGKTVCLMSLITSVQFARPEMGKFIYCTRTVPEMVKCVEELKRVVNYRAECVGAEGRKILALCLSSRRNMCIHDRVLEESDREAVDAACRSMTASWVRKRA 190
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BLAST of mRNA_P-wetherbeei_contig13937.1.1 vs. uniprot
Match: A0A836CJZ4_9STRA (General transcription and DNA repair factor IIH helicase subunit XPD n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJZ4_9STRA)

HSP 1 Score: 223 bits (567), Expect = 2.300e-65
Identity = 105/146 (71.92%), Postives = 122/146 (83.56%), Query Frame = 1 
Query:    1 MRFEIDGLDVFFPYDYLYKEQYEYMVELKRALDAKGHCLLEMPTGTGKTVCLISLITSYQFSHPEMGKFIYCTRTVPEMVKCVEELKRVMSYRASELRAEDKPILALCLSSRRNLCINERVMRESDREAVDSACRNMTASWVRQRA 438
            M F +  + V+FPYDY Y EQY YM ELK  LDAKGHCLLEMPTGTGKTVCLI+LIT+YQ+ HPE+GK IYCTRTVPEMVKCVEE+KRV+ YR  +L      +LALCLSSRRNLCI++RV+ ++DREAVD ACR+MTASWVRQRA
Sbjct:    1 MIFTLGDITVWFPYDYCYPEQYAYMSELKTTLDAKGHCLLEMPTGTGKTVCLIALITAYQYQHPEVGKLIYCTRTVPEMVKCVEEIKRVIRYREEQLGPAGSKVLALCLSSRRNLCIHQRVLEDADREAVDGACRDMTASWVRQRA 146
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BLAST of mRNA_P-wetherbeei_contig13937.1.1 vs. uniprot
Match: A0A7R9TIP8_9VIRI (Hypothetical protein (Fragment) n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9TIP8_9VIRI)

HSP 1 Score: 201 bits (511), Expect = 9.980e-64
Identity = 98/148 (66.22%), Postives = 118/148 (79.73%), Query Frame = 1 
Query:    1 MRFEIDGLDVFFPYDYLYKEQYEYMVELKRALDAKGHCLLEMPTGTGKTVCLISLITSYQFSHPEMGKFIYCTRTVPEMVKCVEELKRVMSYRASELRAEDKPILALCLSSRRNLCINERVMR--ESDREAVDSACRNMTASWVRQRA 438
            M+F +DG+DV+FPYDY+Y EQYEYM+ELKR LDAKGHCLLEMPTGTGKT+ L+SLITSYQ ++P +GK +YCTRTVPEM K + ELK + S RA +L    K  LAL LSSRRN+CINE V+    +DRE+VDS CR +TASWVR  A
Sbjct:    1 MKFNLDGMDVYFPYDYIYPEQYEYMLELKRTLDAKGHCLLEMPTGTGKTITLLSLITSYQVANPGVGKLVYCTRTVPEMEKVMAELKHLHSMRAHDLGERAKNFLALVLSSRRNMCINESVLAGAATDRESVDSRCRRLTASWVRDSA 148
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BLAST of mRNA_P-wetherbeei_contig13937.1.1 vs. uniprot
Match: A0A7S1CFN5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CFN5_9STRA)

HSP 1 Score: 206 bits (523), Expect = 1.930e-63
Identity = 101/155 (65.16%), Postives = 119/155 (76.77%), Query Frame = 1 
Query:    1 MRFEIDGLDVFFPYDYLYKEQYEYMVELKRALD----------AKGHCLLEMPTGTGKTVCLISLITSYQFSHPEMGKFIYCTRTVPEMVKCVEELKRVMSYRASELRAEDKPILALCLSSRRNLCINERVMRESDREAVDSACRNMTASWVRQR 435
            M+F +DGL V+FPY Y+Y EQ +YM ELKRALD          AKGHC+LEMPTGTGKTV L+SLITSYQ +HP +GK +YCTRTVPEM KCV ELKRV+ YR  EL  E   +LA CLSSRRN+CI+ERVM E+DRE VD+ACR  TA WVR++
Sbjct:    1 MKFLLDGLQVYFPYPYVYSEQLKYMRELKRALDVAFAPGVSTTAKGHCMLEMPTGTGKTVALLSLITSYQLAHPTVGKLMYCTRTVPEMTKCVGELKRVIEYRVKELGPEGGNVLACCLSSRRNMCIHERVMAEADREQVDAACRKRTAPWVREK 155
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BLAST of mRNA_P-wetherbeei_contig13937.1.1 vs. uniprot
Match: A0A7S0S086_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0S086_9CHLO)

HSP 1 Score: 200 bits (509), Expect = 1.590e-61
Identity = 92/146 (63.01%), Postives = 120/146 (82.19%), Query Frame = 1 
Query:    1 MRFEIDGLDVFFPYDYLYKEQYEYMVELKRALDAKGHCLLEMPTGTGKTVCLISLITSYQFSHPEMGKFIYCTRTVPEMVKCVEELKRVMSYRASELRAEDKPILALCLSSRRNLCINERVMRESDREAVDSACRNMTASWVRQRA 438
            MRF+++GL V+FPY+Y+Y EQY YM+ELKR+LDA+GH LLEMPTGTGKT+ L+SLITSYQ +HPE+GK +YCTRTVPEM K + EL+ +++YR+  L  +  PI+AL LSSR+NLC++  V  E  RE+VDS CR +TASWVR+RA
Sbjct:    1 MRFKLEGLTVYFPYEYIYPEQYRYMLELKRSLDARGHSLLEMPTGTGKTITLLSLITSYQLAHPEVGKLVYCTRTVPEMEKVLAELQELIAYRSKYLGPDAAPIMALGLSSRKNLCVHPTVAEEGSRESVDSGCRKLTASWVRERA 146
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BLAST of mRNA_P-wetherbeei_contig13937.1.1 vs. uniprot
Match: A0A7S2WST0_9STRA (General transcription and DNA repair factor IIH helicase subunit XPD n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WST0_9STRA)

HSP 1 Score: 211 bits (536), Expect = 2.190e-61
Identity = 101/147 (68.71%), Postives = 119/147 (80.95%), Query Frame = 1 
Query:    1 MRFEIDGLDVFFPYDYLYKEQYEYMVELKRALDAKGHCLLEMPTGTGKTVCLISLITSYQFSHPEMGKFIYCTRTVPEMVKCVEELKRVMSYRASELRAEDKP-ILALCLSSRRNLCINERVMRESDREAVDSACRNMTASWVRQRA 438
            MRF +DGLDVFFPY  +Y EQY+YM+ELKRALDAKG CLLEMPTGTGKTV L++LITSYQF+HPE GK +YCTRTVPEM KCVEEL+RV+++R   L   D P  L +CLS+RRN+CIN +V++ SDRE VDS CR   A WVRQ A
Sbjct:    1 MRFNLDGLDVFFPYPTIYPEQYDYMLELKRALDAKGSCLLEMPTGTGKTVSLLALITSYQFAHPETGKLVYCTRTVPEMTKCVEELERVINHRTELLAGTDAPPFLGVCLSARRNMCINPQVIQNSDREQVDSLCRKKIAPWVRQNA 147
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BLAST of mRNA_P-wetherbeei_contig13937.1.1 vs. uniprot
Match: A0A835XSX7_9CHLO (Helicase ATP-binding domain-containing protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XSX7_9CHLO)

HSP 1 Score: 199 bits (505), Expect = 2.450e-61
Identity = 93/146 (63.70%), Postives = 117/146 (80.14%), Query Frame = 1 
Query:    1 MRFEIDGLDVFFPYDYLYKEQYEYMVELKRALDAKGHCLLEMPTGTGKTVCLISLITSYQFSHPEMGKFIYCTRTVPEMVKCVEELKRVMSYRASELRAEDKPILALCLSSRRNLCINERVMRESDREAVDSACRNMTASWVRQRA 438
            M+F ++GL V+FPY+Y+Y EQY YM+ELKR+LDA+GHCLLEMPTGTGKT+ L+SLITSYQ +H E+GK IYCTRTVPEM K + EL  ++SYR+  L      ILAL LSSR+NLC++ RV  E  RE+VD+ CR +TASWVR+RA
Sbjct:    1 MKFNLEGLTVYFPYEYIYPEQYRYMLELKRSLDARGHCLLEMPTGTGKTITLLSLITSYQLAHKEVGKLIYCTRTVPEMEKVLSELSELVSYRSQHLPQGAGSILALGLSSRKNLCVHPRVAEEGSRESVDAGCRRLTASWVRERA 146
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13937.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDN2_ECTSI1.390e-7478.08General transcription and DNA repair factor IIH he... [more]
K8YZX4_NANGC1.550e-7380.00General transcription and DNA repair factor IIH he... [more]
A0A482RW16_9ARCH1.750e-6970.55Helicase ATP-binding domain-containing protein (Fr... [more]
A0A7R9U4D1_9STRA7.920e-6875.34General transcription and DNA repair factor IIH he... [more]
A0A836CJZ4_9STRA2.300e-6571.92General transcription and DNA repair factor IIH he... [more]
A0A7R9TIP8_9VIRI9.980e-6466.22Hypothetical protein (Fragment) n=1 Tax=Prasinoder... [more]
A0A7S1CFN5_9STRA1.930e-6365.16Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7S0S086_9CHLO1.590e-6163.01Hypothetical protein (Fragment) n=1 Tax=Chlamydomo... [more]
A0A7S2WST0_9STRA2.190e-6168.71General transcription and DNA repair factor IIH he... [more]
A0A835XSX7_9CHLO2.450e-6163.70Helicase ATP-binding domain-containing protein n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13937contigP-wetherbeei_contig13937:920..1602 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LDN2
Preferred nameERCC2
PFAMsDEAD_2,HBB,Helicase_C_2
Model size438
Max annot lvl2759|Eukaryota
KEGG koko:K10844
KEGG Pathwayko03022,ko03420,map03022,map03420
KEGG ModuleM00290
Hectar predicted targeting categoryother localisation
GOsGO:0000018,GO:0000019,GO:0000109,GO:0000112,GO:0000166,GO:0000428,GO:0000439,GO:0000717,GO:0000988,GO:0000990,GO:0000991,GO:0001109,GO:0001111,GO:0001112,GO:0001113,GO:0001120,GO:0001503,GO:0001701,GO:0001942,GO:0002244,GO:0002262,GO:0002376,GO:0002520,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003684,GO:0003824,GO:0004003,GO:0004386,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005669,GO:0005675,GO:0005694,GO:0005700,GO:0005703,GO:0005705,GO:0005737,GO:0005819,GO:0005829,GO:0005856,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006293,GO:0006294,GO:0006296,GO:0006351,GO:0006352,GO:0006353,GO:0006354,GO:0006355,GO:0006357,GO:0006360,GO:0006361,GO:0006363,GO:0006366,GO:0006367,GO:0006368,GO:0006370,GO:0006396,GO:0006397,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006915,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007049,GO:0007059,GO:0007088,GO:0007272,GO:0007275,GO:0007346,GO:0007348,GO:0007399,GO:0007417,GO:0007568,GO:0008022,GO:0008026,GO:0008094,GO:0008144,GO:0008150,GO:0008152,GO:0008219,GO:0008283,GO:0008366,GO:0008544,GO:0009058,GO:0009059,GO:0009266,GO:0009314,GO:0009408,GO:0009411,GO:0009416,GO:0009452,GO:0009628,GO:0009650,GO:0009653,GO:0009790,GO:0009791,GO:0009792,GO:0009794,GO:0009888,GO:0009889,GO:0009891,GO:0009893,GO:0009913,GO:0009987,GO:0010001,GO:0010389,GO:0010467,GO:0010468,GO:0010525,GO:0010528,GO:0010556,GO:0010557,GO:0010564,GO:0010604,GO:0010628,GO:0010927,GO:0010948,GO:0010972,GO:0012501,GO:0014003,GO:0015630,GO:0016043,GO:0016070,GO:0016071,GO:0016310,GO:0016462,GO:0016591,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0021510,GO:0021700,GO:0021782,GO:0022008,GO:0022010,GO:0022402,GO:0022404,GO:0022405,GO:0022607,GO:0030097,GO:0030099,GO:0030154,GO:0030182,GO:0030198,GO:0030218,GO:0030282,GO:0030554,GO:0030855,GO:0030880,GO:0031214,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031334,GO:0031974,GO:0031981,GO:0032288,GO:0032289,GO:0032291,GO:0032392,GO:0032501,GO:0032502,GO:0032508,GO:0032553,GO:0032555,GO:0032559,GO:0032774,GO:0032806,GO:0032989,GO:0032991,GO:0033043,GO:0033554,GO:0033683,GO:0034101,GO:0034367,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0035264,GO:0035315,GO:0035639,GO:0036094,GO:0036211,GO:0036260,GO:0040007,GO:0040016,GO:0042063,GO:0042303,GO:0042552,GO:0042592,GO:0042623,GO:0042633,GO:0043009,GO:0043062,GO:0043139,GO:0043141,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043249,GO:0043254,GO:0043388,GO:0043412,GO:0043588,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044798,GO:0045786,GO:0045893,GO:0045911,GO:0045930,GO:0045935,GO:0045944,GO:0045951,GO:0045995,GO:0046483,GO:0047485,GO:0048468,GO:0048469,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048589,GO:0048646,GO:0048699,GO:0048709,GO:0048731,GO:0048820,GO:0048821,GO:0048856,GO:0048863,GO:0048869,GO:0048872,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051098,GO:0051099,GO:0051101,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051239,GO:0051252,GO:0051254,GO:0051276,GO:0051301,GO:0051716,GO:0051726,GO:0051783,GO:0051983,GO:0055029,GO:0060218,GO:0060255,GO:0060429,GO:0061515,GO:0061695,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070035,GO:0070816,GO:0070911,GO:0071103,GO:0071695,GO:0071704,GO:0071817,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0090575,GO:0097159,GO:0097367,GO:0097659,GO:0098687,GO:0098773,GO:0140097,GO:0140110,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902494,GO:1902554,GO:1902680,GO:1902749,GO:1902750,GO:1902911,GO:1903506,GO:1903508,GO:1990234,GO:1990391,GO:2000026,GO:2000112,GO:2001141
Exons2
Evalue2.29e-75
EggNOG OGsCOG1199@1|root,KOG1131@2759|Eukaryota
EC3.6.4.12
DescriptionATP-dependent DNA helicase activity
Cds size438
COG categoryKL
BRITEko00000,ko00001,ko00002,ko01000,ko03021,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186002.6231031-CDS-P-wetherbeei_contig13937:919..10521683186002.6231031-CDS-P-wetherbeei_contig13937:919..1052Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13937 920..1052 +
1683186002.635798-CDS-P-wetherbeei_contig13937:1297..16021683186002.635798-CDS-P-wetherbeei_contig13937:1297..1602Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13937 1298..1602 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13937.1.1prot_P-wetherbeei_contig13937.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13937 920..1602 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13937.1.1

>prot_P-wetherbeei_contig13937.1.1 ID=prot_P-wetherbeei_contig13937.1.1|Name=mRNA_P-wetherbeei_contig13937.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=146bp
MRFEIDGLDVFFPYDYLYKEQYEYMVELKRALDAKGHCLLEMPTGTGKTV
CLISLITSYQFSHPEMGKFIYCTRTVPEMVKCVEELKRVMSYRASELRAE
DKPILALCLSSRRNLCINERVMRESDREAVDSACRNMTASWVRQRA
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mRNA from alignment at P-wetherbeei_contig13937:920..1602+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13937.1.1 ID=mRNA_P-wetherbeei_contig13937.1.1|Name=mRNA_P-wetherbeei_contig13937.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=683bp|location=Sequence derived from alignment at P-wetherbeei_contig13937:920..1602+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGATTTGAGATTGACGGGCTCGACGTTTTCTTCCCGTACGACTACCT
GTATAAGGAGCAATATGAGTATATGGTCGAGCTCAAGCGCGCTCTCGACG
CTAAGGGCCATTGCCTCCTCGAGATGCCCACCGGTGCGTCACGACTGGGC
ATTCTTAGCATTTAATGCTCAGTTCGGCAAGCTGCTGTTGTATAGCCTGA
CATTTATAGATGGTGTGCGATGGAAACGTAGACTTCTGCACCTATCTCAC
TTTCTTTCCCTCTTTCAAGCCTCGTTTACTTTATCGTCTGTGTTTCTGGA
CCCCTTCGTCTCATCTCTTTCAACTTCCCTCTCTCGATCCTTTTCTTCTT
CCTCCTGTCTGCCTGTTTCTTGATGCAGGCACGGGCAAAACGGTGTGCCT
AATCTCCCTCATCACGAGCTACCAGTTCTCCCACCCGGAGATGGGCAAGT
TTATCTACTGCACGCGCACCGTGCCCGAGATGGTCAAGTGCGTCGAGGAG
CTCAAGCGCGTCATGAGCTACCGGGCCAGCGAGCTCAGGGCTGAGGACAA
GCCAATCCTCGCGCTCTGCCTGAGCTCCCGCCGCAACCTCTGCATCAACG
AGCGCGTCATGCGGGAGAGCGACCGGGAGGCGGTCGACAGTGCCTGCCGC
AACATGACGGCCAGCTGGGTCCGCCAGCGTGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13937:920..1602+

>mRNA_P-wetherbeei_contig13937.1.1 ID=mRNA_P-wetherbeei_contig13937.1.1|Name=mRNA_P-wetherbeei_contig13937.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=438bp|location=Sequence derived from alignment at P-wetherbeei_contig13937:920..1602+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGATTTGAGATTGACGGGCTCGACGTTTTCTTCCCGTACGACTACCT
GTATAAGGAGCAATATGAGTATATGGTCGAGCTCAAGCGCGCTCTCGACG
CTAAGGGCCATTGCCTCCTCGAGATGCCCACCGGCACGGGCAAAACGGTG
TGCCTAATCTCCCTCATCACGAGCTACCAGTTCTCCCACCCGGAGATGGG
CAAGTTTATCTACTGCACGCGCACCGTGCCCGAGATGGTCAAGTGCGTCG
AGGAGCTCAAGCGCGTCATGAGCTACCGGGCCAGCGAGCTCAGGGCTGAG
GACAAGCCAATCCTCGCGCTCTGCCTGAGCTCCCGCCGCAACCTCTGCAT
CAACGAGCGCGTCATGCGGGAGAGCGACCGGGAGGCGGTCGACAGTGCCT
GCCGCAACATGACGGCCAGCTGGGTCCGCCAGCGTGCC
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