mRNA_P-wetherbeei_contig13934.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13934.2.1
Unique NamemRNA_P-wetherbeei_contig13934.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig13934.2.1 vs. uniprot
Match: D7FWI8_ECTSI (Histone H2B n=5 Tax=Ectocarpus TaxID=2879 RepID=D7FWI8_ECTSI)

HSP 1 Score: 120 bits (301), Expect = 8.320e-30
Identity = 66/80 (82.50%), Postives = 69/80 (86.25%), Query Frame = 3 
Query:   60 MAKTPSKKSAKAPKKAGDKK---KPTESYSSYIFNVRKLVQPDTGTSKRGMSIMNSFINDVFELVALEAGKLTRYNKKST 290
            MAKTPSKKSAKAPKKAGDKK   K TESYSSYI+ V K V PDTG SKRGMSIMNSFINDVFE VA E+GKLTRYNKK+T
Sbjct:    1 MAKTPSKKSAKAPKKAGDKKRTNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKAT 80
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BLAST of mRNA_P-wetherbeei_contig13934.2.1 vs. uniprot
Match: A0A836CJ22_9STRA (Histone H2B n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ22_9STRA)

HSP 1 Score: 113 bits (282), Expect = 5.120e-27
Identity = 62/81 (76.54%), Postives = 65/81 (80.25%), Query Frame = 3 
Query:   60 MAKTPSKKSAKAPKKAGDKKKP----TESYSSYIFNVRKLVQPDTGTSKRGMSIMNSFINDVFELVALEAGKLTRYNKKST 290
            MAK PSKK+AKAPKKA D KK     TESY SYI+ V K V PDTG SKRGMSIMNSFINDVFE +A EAGKLTRYNKKST
Sbjct:    1 MAKIPSKKAAKAPKKAADGKKKKAKRTESYGSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERIASEAGKLTRYNKKST 81
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BLAST of mRNA_P-wetherbeei_contig13934.2.1 vs. uniprot
Match: A0A6U0X3U9_9STRA (Histone H2B n=2 Tax=Dictyochophyceae TaxID=39119 RepID=A0A6U0X3U9_9STRA)

HSP 1 Score: 113 bits (283), Expect = 5.350e-27
Identity = 61/83 (73.49%), Postives = 69/83 (83.13%), Query Frame = 3 
Query:   51 QHTMAKTPSKKSAKAPKKAGDKKKP---TESYSSYIFNVRKLVQPDTGTSKRGMSIMNSFINDVFELVALEAGKLTRYNKKST 290
            Q TMAKTPSKKSAKAPKKAGDK K    TESYSSYI+ V K V P+TG SK+GMSIMNSFIND+FE +A EAG+L RY+KK+T
Sbjct:   12 QSTMAKTPSKKSAKAPKKAGDKVKKGKRTESYSSYIYKVLKQVHPETGISKKGMSIMNSFINDIFERLAGEAGRLARYSKKAT 94
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BLAST of mRNA_P-wetherbeei_contig13934.2.1 vs. uniprot
Match: A0A836CJT3_9STRA (Histone H2B n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJT3_9STRA)

HSP 1 Score: 115 bits (287), Expect = 3.350e-26
Identity = 63/82 (76.83%), Postives = 66/82 (80.49%), Query Frame = 3 
Query:   57 TMAKTPSKKSAKAPKKAGDKKKP----TESYSSYIFNVRKLVQPDTGTSKRGMSIMNSFINDVFELVALEAGKLTRYNKKST 290
            TMAK PSKK+AKAPKKA D KK     TESY SYI+ V K V PDTG SKRGMSIMNSFINDVFE +A EAGKLTRYNKKST
Sbjct:  133 TMAKIPSKKAAKAPKKAADGKKKKAKRTESYGSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERIASEAGKLTRYNKKST 214
[Close]
BLAST of mRNA_P-wetherbeei_contig13934.2.1 vs. uniprot
Match: A0A7S4S1B0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4S1B0_9STRA)

HSP 1 Score: 109 bits (273), Expect = 7.260e-26
Identity = 58/81 (71.60%), Postives = 66/81 (81.48%), Query Frame = 3 
Query:   60 MAKTPSKKSAKAPKKAGDKKKPT----ESYSSYIFNVRKLVQPDTGTSKRGMSIMNSFINDVFELVALEAGKLTRYNKKST 290
            MAKTPSK+SAK PKKAGDKKK +    ESYSSYI+ V K V PDTG SK+GMSIMNSFI D+FE +A EAGKL+ YNKK+T
Sbjct:    1 MAKTPSKQSAKPPKKAGDKKKRSKKRVESYSSYIYKVMKQVHPDTGISKKGMSIMNSFIKDIFERIATEAGKLSTYNKKAT 81
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BLAST of mRNA_P-wetherbeei_contig13934.2.1 vs. uniprot
Match: A0A485K2U0_9STRA (Histone H2B n=29 Tax=Stramenopiles TaxID=33634 RepID=A0A485K2U0_9STRA)

HSP 1 Score: 109 bits (273), Expect = 1.060e-25
Identity = 59/82 (71.95%), Postives = 66/82 (80.49%), Query Frame = 3 
Query:   60 MAKTPSKKSAKAPKKAGDKKKPT-----ESYSSYIFNVRKLVQPDTGTSKRGMSIMNSFINDVFELVALEAGKLTRYNKKST 290
            MAKTPSKKSAKAPKK G+K K       ESYS+YI+ V K V P+TG SKRGMSIMNSFIND+FE +A EAGKL+RYNKKST
Sbjct:    1 MAKTPSKKSAKAPKKTGEKGKNRKVKRIESYSTYIYKVLKQVHPETGISKRGMSIMNSFINDIFERIASEAGKLSRYNKKST 82
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BLAST of mRNA_P-wetherbeei_contig13934.2.1 vs. uniprot
Match: H2B_OLILU (Histone H2B n=1 Tax=Olisthodiscus luteus TaxID=83000 RepID=H2B_OLILU)

HSP 1 Score: 107 bits (268), Expect = 4.830e-25
Identity = 57/78 (73.08%), Postives = 65/78 (83.33%), Query Frame = 3 
Query:   60 MAKTPSKKSAKAPKKAGDKK-KPTESYSSYIFNVRKLVQPDTGTSKRGMSIMNSFINDVFELVALEAGKLTRYNKKST 290
            MAKTPSKK+AKAPKKAG K+ K  E+YSSYI+ V K V PDTG SKRGMSIMNSFIND+FE +A EA +L RYNK+ST
Sbjct:    1 MAKTPSKKAAKAPKKAGSKRNKRVETYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDIFERLAGEASRLARYNKRST 78
[Close]
BLAST of mRNA_P-wetherbeei_contig13934.2.1 vs. uniprot
Match: A0A6U6DWX5_9STRA (Histone H2B n=4 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6DWX5_9STRA)

HSP 1 Score: 107 bits (268), Expect = 5.910e-25
Identity = 59/80 (73.75%), Postives = 67/80 (83.75%), Query Frame = 3 
Query:   57 TMAKTPSKKSAKAPKKAGDKK--KPTESYSSYIFNVRKLVQPDTGTSKRGMSIMNSFINDVFELVALEAGKLTRYNKKST 290
            TMAKTPSKK+A APKKAG K+  K TESYSSYI+ V K V PDTG SK+GMSIMNSFIND+FE +A EAGKL+ YNKK+T
Sbjct:    7 TMAKTPSKKAA-APKKAGGKRSRKRTESYSSYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIASEAGKLSTYNKKAT 85
[Close]
BLAST of mRNA_P-wetherbeei_contig13934.2.1 vs. uniprot
Match: A0A6A4Z7R2_9STRA (Histone domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4Z7R2_9STRA)

HSP 1 Score: 107 bits (268), Expect = 6.630e-25
Identity = 58/81 (71.60%), Postives = 65/81 (80.25%), Query Frame = 3 
Query:   60 MAKTPSKKSAKAPKKAGDKK------KPTESYSSYIFNVRKLVQPDTGTSKRGMSIMNSFINDVFELVALEAGKLTRYNKK 284
            MAKTPSKKSAKAPKKAG+ K      K  ESYS+YI+ V K V P+TG SKRGMSIMNSFIND+FE +A EAGKL+RYNKK
Sbjct:    1 MAKTPSKKSAKAPKKAGEGKGKGKRVKRVESYSTYIYKVLKQVHPETGISKRGMSIMNSFINDIFERIASEAGKLSRYNKK 81
[Close]
BLAST of mRNA_P-wetherbeei_contig13934.2.1 vs. uniprot
Match: B7FWR8_PHATC (Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 RepID=B7FWR8_PHATC)

HSP 1 Score: 107 bits (266), Expect = 9.950e-25
Identity = 59/80 (73.75%), Postives = 66/80 (82.50%), Query Frame = 3 
Query:   60 MAKTPSKKSAKAPKKA--GDK-KKPTESYSSYIFNVRKLVQPDTGTSKRGMSIMNSFINDVFELVALEAGKLTRYNKKST 290
            MAKTPSK+SAKAPKKA  G K KK TE+YSSYI+ V K V PDTG SK+GMSIMNSFIND+FE +A EAGKL  YNKK+T
Sbjct:    1 MAKTPSKQSAKAPKKAATGTKSKKRTETYSSYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIATEAGKLATYNKKAT 80
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13934.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWI8_ECTSI8.320e-3082.50Histone H2B n=5 Tax=Ectocarpus TaxID=2879 RepID=D7... [more]
A0A836CJ22_9STRA5.120e-2776.54Histone H2B n=2 Tax=Tribonema minus TaxID=303371 R... [more]
A0A6U0X3U9_9STRA5.350e-2773.49Histone H2B n=2 Tax=Dictyochophyceae TaxID=39119 R... [more]
A0A836CJT3_9STRA3.350e-2676.83Histone H2B n=1 Tax=Tribonema minus TaxID=303371 R... [more]
A0A7S4S1B0_9STRA7.260e-2671.60Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A485K2U0_9STRA1.060e-2571.95Histone H2B n=29 Tax=Stramenopiles TaxID=33634 Rep... [more]
H2B_OLILU4.830e-2573.08Histone H2B n=1 Tax=Olisthodiscus luteus TaxID=830... [more]
A0A6U6DWX5_9STRA5.910e-2573.75Histone H2B n=4 Tax=Odontella aurita TaxID=265563 ... [more]
A0A6A4Z7R2_9STRA6.630e-2571.60Histone domain-containing protein n=1 Tax=Aphanomy... [more]
B7FWR8_PHATC9.950e-2573.75Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 Re... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13934contigP-wetherbeei_contig13934:633..1774 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FWI8
PFAMsHistone
Model size1142
Max annot lvl2759|Eukaryota
KEGG koko:K11252
KEGG Pathwayko05034,ko05203,ko05322,map05034,map05203,map05322
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000785,GO:0000786,GO:0000788,GO:0000790,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0006325,GO:0006333,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0031298,GO:0031974,GO:0031981,GO:0032991,GO:0032993,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0051276,GO:0070013,GO:0071840,GO:0097159,GO:1901363
Exons1
Evalue5.35e-34
EggNOG OGsKOG1744@1|root,KOG1744@2759|Eukaryota
Descriptionprotein heterodimerization activity
Cds size234
COG categoryB
BRITEko00000,ko00001,ko03036,ko04147
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186002.5343115-UTR-P-wetherbeei_contig13934:632..6911683186002.5343115-UTR-P-wetherbeei_contig13934:632..691Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig13934 633..691 +
1683186002.554572-UTR-P-wetherbeei_contig13934:925..17741683186002.554572-UTR-P-wetherbeei_contig13934:925..1774Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig13934 926..1774 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186002.545301-CDS-P-wetherbeei_contig13934:691..9251683186002.545301-CDS-P-wetherbeei_contig13934:691..925Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13934 692..925 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13934.2.1prot_P-wetherbeei_contig13934.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13934 692..925 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13934.2.1

>prot_P-wetherbeei_contig13934.2.1 ID=prot_P-wetherbeei_contig13934.2.1|Name=mRNA_P-wetherbeei_contig13934.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=78bp
MAKTPSKKSAKAPKKAGDKKKPTESYSSYIFNVRKLVQPDTGTSKRGMSI
MNSFINDVFELVALEAGKLTRYNKKST*
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mRNA from alignment at P-wetherbeei_contig13934:633..1774+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13934.2.1 ID=mRNA_P-wetherbeei_contig13934.2.1|Name=mRNA_P-wetherbeei_contig13934.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1142bp|location=Sequence derived from alignment at P-wetherbeei_contig13934:633..1774+ (Phaeothamnion wetherbeei SAG_119_79)
GTTCGTCGCTGGGAGGAGTATCCCGGCGTATCACTCCATTTCCCCACATA
CAGCACACTATGGCGAAGACTCCCTCGAAGAAGTCAGCCAAGGCGCCGAA
GAAGGCTGGGGACAAGAAGAAGCCGACGGAGTCGTACTCGTCGTACATCT
TCAACGTGCGCAAGCTGGTGCAACCGGACACGGGCACCTCCAAGCGCGGC
ATGAGCATCATGAACTCATTCATCAATGATGTTTTCGAGCTGGTCGCCCT
CGAGGCCGGCAAGCTCACGCGCTACAACAAGAAGAGCACGTGAGATCCAG
ACCGCCGTGCGCCTCATGCTGCCCGGAGAGCTCGCCAAACACGTCCTGTC
GGAGGGCACCCAGGCCGTCACCAAGTTTACATCGTCTTAGACAGGGAGAG
GTGAAGGCGTTTTTAAGCACCAAGTGTGATTCAGAACGGAAGCCAATACG
GAACTAGGCGGAAGAACTGTTGTTTTAAAGGCAGTTGGTTGGTGGTACTG
CTTTATATTGCAGGTTGGTTGAAGTTTTAATTGTTTTGCATTACTACCAG
AATGGTTGCATCGCTTCAAGTATTTTGGCACGGCAGCCGTTCCGTTCTTT
CTCGTATTATCGGATCTCAAGGTGAGCGTTCTTTTCTTTTCCGCAAGATG
TGATAACGAGAAGTAAACTTGGCGAAGCCGATTCGCCGATCGTGCTGCCA
CGCTGCTGGTGCGGTTGTGGACGCTGGATCGGGAGAAGCAGCTCGGGGCC
ATAGCTAACTGGAGTGGAGAACGGGCGCAGCCGCCCGCCGCCGCTTGTGA
TGACGTATTATTTATCTAGGACCAACACCTCCGTTCGGTACTGAGCTTGG
TGCCGGAGCTGTCTCCTTCCACAGGCGACGCCGTTGCTATTCCTGCTGCC
TGGCTGGACGATGCTGTGGCGGGCTCCGCCCGTTCTTCCGGCGCGCCCGC
AAAACCTGCCAAATGATGGTCAGCAATTTTTCTTGACCTGCACAGAATTA
TCGCGCCGCCATGGCGTGCGAGCGGGCGGCTGCAGCGACGGCGCATCGTG
GCATAGGAAGTCGGGTGAGATGAGTCTGCAATTGGTTTTGGTCGGCGGGC
GGTCCCATTATCATTGCCTGTGTGATCTTGCGGTCAGCGAGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13934:633..1774+

>mRNA_P-wetherbeei_contig13934.2.1 ID=mRNA_P-wetherbeei_contig13934.2.1|Name=mRNA_P-wetherbeei_contig13934.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=234bp|location=Sequence derived from alignment at P-wetherbeei_contig13934:633..1774+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGAAGACTCCCTCGAAGAAGTCAGCCAAGGCGCCGAAGAAGGCTGG
GGACAAGAAGAAGCCGACGGAGTCGTACTCGTCGTACATCTTCAACGTGC
GCAAGCTGGTGCAACCGGACACGGGCACCTCCAAGCGCGGCATGAGCATC
ATGAACTCATTCATCAATGATGTTTTCGAGCTGGTCGCCCTCGAGGCCGG
CAAGCTCACGCGCTACAACAAGAAGAGCACGTGA
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