mRNA_P-wetherbeei_contig13934.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13934.1.1
Unique NamemRNA_P-wetherbeei_contig13934.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig13934.1.1 vs. uniprot
Match: A0A836CG77_9STRA (Histone H2A n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG77_9STRA)

HSP 1 Score: 189 bits (480), Expect = 3.250e-60
Identity = 96/109 (88.07%), Postives = 104/109 (95.41%), Query Frame = 1 
Query:    1 GKGGRGGEKKKATTRSAKAGLQFPVGRIGRFLKQGRYSQRVGGGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHVQLAVRNDEELNKLLGNVTIASGGVLPNI 327
            GKGGRG E KK+T++S+KAGLQFPV R+GRFLK GRY++RVG GAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRH+QLAVRNDEELNKLLGNVTIASGGVLPNI
Sbjct:    5 GKGGRGAEAKKSTSKSSKAGLQFPVARLGRFLKVGRYAERVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHIQLAVRNDEELNKLLGNVTIASGGVLPNI 113
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BLAST of mRNA_P-wetherbeei_contig13934.1.1 vs. uniprot
Match: A0A835ZBB6_9STRA (Histone H2A n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBB6_9STRA)

HSP 1 Score: 188 bits (477), Expect = 1.020e-59
Identity = 96/109 (88.07%), Postives = 103/109 (94.50%), Query Frame = 1 
Query:    1 GKGGRGGEKKKATTRSAKAGLQFPVGRIGRFLKQGRYSQRVGGGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHVQLAVRNDEELNKLLGNVTIASGGVLPNI 327
            GKGGRG E KK T++SAKAGLQFPV R+GR+LKQGRY+ RVG GAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRH+QLAVRNDEELN+LLGNVTIASGGVLPNI
Sbjct:    5 GKGGRGAEGKKITSQSAKAGLQFPVARMGRYLKQGRYADRVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHIQLAVRNDEELNRLLGNVTIASGGVLPNI 113
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BLAST of mRNA_P-wetherbeei_contig13934.1.1 vs. uniprot
Match: A0A6G0X3A7_9STRA (Histone H2A n=29 Tax=Saprolegniaceae TaxID=4764 RepID=A0A6G0X3A7_9STRA)

HSP 1 Score: 185 bits (469), Expect = 2.420e-58
Identity = 94/107 (87.85%), Postives = 103/107 (96.26%), Query Frame = 1 
Query:    7 GGRGGEKKKATTRSAKAGLQFPVGRIGRFLKQGRYSQRVGGGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHVQLAVRNDEELNKLLGNVTIASGGVLPNI 327
            GGRG +K K ++RSAKAGLQFPVGR+ RFLK+GRY+QR+GGGAPVYLAAVLEYLCAEILELAGNAARDNKKSRI+PRH+QLAVRNDEELNKLLGNVTIASGGVLPNI
Sbjct:    9 GGRG-KKGKTSSRSAKAGLQFPVGRVARFLKKGRYAQRIGGGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIIPRHIQLAVRNDEELNKLLGNVTIASGGVLPNI 114
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BLAST of mRNA_P-wetherbeei_contig13934.1.1 vs. uniprot
Match: A0A2R5GVM3_9STRA (Histone H2A n=4 Tax=Labyrinthulomycetes TaxID=35131 RepID=A0A2R5GVM3_9STRA)

HSP 1 Score: 182 bits (462), Expect = 1.690e-57
Identity = 94/109 (86.24%), Postives = 102/109 (93.58%), Query Frame = 1 
Query:    1 GKGGRGGEKKKATTRSAKAGLQFPVGRIGRFLKQGRYSQRVGGGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHVQLAVRNDEELNKLLGNVTIASGGVLPNI 327
            GKGGRG +  KATTRSAKAGLQFPVGRI R+LK+G Y+ RVGGGAPVY+AAVLEYL AEILELAGNAARDNKK+RI+PRH+QLAVRNDEELNKLLGNVTIASGGVLPNI
Sbjct:    5 GKGGRGKKGGKATTRSAKAGLQFPVGRIARYLKKGGYATRVGGGAPVYMAAVLEYLAAEILELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGNVTIASGGVLPNI 113
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BLAST of mRNA_P-wetherbeei_contig13934.1.1 vs. uniprot
Match: A0A6U2JFS4_9STRA (Histone H2A n=6 Tax=Bacillariophyta TaxID=2836 RepID=A0A6U2JFS4_9STRA)

HSP 1 Score: 181 bits (459), Expect = 4.120e-57
Identity = 94/109 (86.24%), Postives = 102/109 (93.58%), Query Frame = 1 
Query:    1 GKGGRGGEKKKATTRSAKAGLQFPVGRIGRFLKQGRYSQRVGGGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHVQLAVRNDEELNKLLGNVTIASGGVLPNI 327
            GKGGRGG  KK+TT SAKAGLQFPVGRIGR+L+QG+Y+ R+G GAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRH+ LAV+NDEELNKLLG VTIASGGVLPNI
Sbjct:    5 GKGGRGG--KKSTTSSAKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKNDEELNKLLGGVTIASGGVLPNI 111
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BLAST of mRNA_P-wetherbeei_contig13934.1.1 vs. uniprot
Match: D7FWI9_ECTSI (Histone H2A n=6 Tax=Ectocarpus TaxID=2879 RepID=D7FWI9_ECTSI)

HSP 1 Score: 181 bits (459), Expect = 4.120e-57
Identity = 93/109 (85.32%), Postives = 102/109 (93.58%), Query Frame = 1 
Query:    1 GKGGRGGEKKKATTRSAKAGLQFPVGRIGRFLKQGRYSQRVGGGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHVQLAVRNDEELNKLLGNVTIASGGVLPNI 327
            GKGGRG   KK+TTRSAKAGLQFPVGR+GRFLK+G+Y+ RVG GAPVYLAAVLEYL AE+LELAGNAARDNKK+RI+PRH+QLAVRNDEELNKLLG VTIASGGVLPNI
Sbjct:    5 GKGGRG---KKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNI 110
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BLAST of mRNA_P-wetherbeei_contig13934.1.1 vs. uniprot
Match: A0A835ZLE9_9STRA (Histone H2A n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZLE9_9STRA)

HSP 1 Score: 181 bits (460), Expect = 5.160e-57
Identity = 91/109 (83.49%), Postives = 103/109 (94.50%), Query Frame = 1 
Query:    1 GKGGRGGEKKKATTRSAKAGLQFPVGRIGRFLKQGRYSQRVGGGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHVQLAVRNDEELNKLLGNVTIASGGVLPNI 327
            GKGGRG   KKA ++SAKAGLQFPVGR+GRFLKQGRY++RVG GAPVY+AAV+EYLCAE+LEL+GNAARDNKKSRI+PRH+QLAVRNDEELNKLLG VTIA+GGVLPNI
Sbjct:    7 GKGGRG--DKKAVSKSAKAGLQFPVGRVGRFLKQGRYAKRVGAGAPVYMAAVMEYLCAEVLELSGNAARDNKKSRIIPRHIQLAVRNDEELNKLLGKVTIAAGGVLPNI 113
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BLAST of mRNA_P-wetherbeei_contig13934.1.1 vs. uniprot
Match: D8LLP0_ECTSI (Histone H2A n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLP0_ECTSI)

HSP 1 Score: 181 bits (458), Expect = 5.320e-57
Identity = 93/109 (85.32%), Postives = 102/109 (93.58%), Query Frame = 1 
Query:    1 GKGGRGGEKKKATTRSAKAGLQFPVGRIGRFLKQGRYSQRVGGGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHVQLAVRNDEELNKLLGNVTIASGGVLPNI 327
            GKGGRG   KK T+RSAKAGLQFPVGRIGRF+KQG+YS RVGGGAPVY+AAVLEYL AE+LELAGNAARDNKK+RIVPRH+QLAVRNDEELN+LLG+ TIASGGVLPNI
Sbjct:    5 GKGGRG---KKITSRSAKAGLQFPVGRIGRFIKQGKYSSRVGGGAPVYMAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNRLLGDATIASGGVLPNI 110
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BLAST of mRNA_P-wetherbeei_contig13934.1.1 vs. uniprot
Match: A0A448ZH28_9STRA (Histone H2A n=12 Tax=Bacillariophyta TaxID=2836 RepID=A0A448ZH28_9STRA)

HSP 1 Score: 179 bits (455), Expect = 1.680e-56
Identity = 93/109 (85.32%), Postives = 102/109 (93.58%), Query Frame = 1 
Query:    1 GKGGRGGEKKKATTRSAKAGLQFPVGRIGRFLKQGRYSQRVGGGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHVQLAVRNDEELNKLLGNVTIASGGVLPNI 327
            GKGGRG  +KK+TT SAKAGLQFPVGRIGR+L+QG+Y+ R+G GAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRH+ LAV+NDEELNKLLG VTIASGGVLPNI
Sbjct:    5 GKGGRG--EKKSTTASAKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKNDEELNKLLGGVTIASGGVLPNI 111
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BLAST of mRNA_P-wetherbeei_contig13934.1.1 vs. uniprot
Match: A0A6V1P7M0_HETAK (Histone H2A n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P7M0_HETAK)

HSP 1 Score: 180 bits (457), Expect = 1.790e-56
Identity = 95/109 (87.16%), Postives = 100/109 (91.74%), Query Frame = 1 
Query:    1 GKGGRGGEKKKATTRSAKAGLQFPVGRIGRFLKQGRYSQRVGGGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHVQLAVRNDEELNKLLGNVTIASGGVLPNI 327
            GK GRG   KK+ TRS+KAGLQFPVGRIGR+LKQGRYS RVG GAPVYLAAVLEYLCAEILELAGNAARDNKK+RIVPRH+QLAVRNDEELNKLLG VTIA GGVLPNI
Sbjct:   29 GKAGRG---KKSQTRSSKAGLQFPVGRIGRYLKQGRYSARVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKTRIVPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNI 134
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13934.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CG77_9STRA3.250e-6088.07Histone H2A n=2 Tax=Tribonema minus TaxID=303371 R... [more]
A0A835ZBB6_9STRA1.020e-5988.07Histone H2A n=1 Tax=Tribonema minus TaxID=303371 R... [more]
A0A6G0X3A7_9STRA2.420e-5887.85Histone H2A n=29 Tax=Saprolegniaceae TaxID=4764 Re... [more]
A0A2R5GVM3_9STRA1.690e-5786.24Histone H2A n=4 Tax=Labyrinthulomycetes TaxID=3513... [more]
A0A6U2JFS4_9STRA4.120e-5786.24Histone H2A n=6 Tax=Bacillariophyta TaxID=2836 Rep... [more]
D7FWI9_ECTSI4.120e-5785.32Histone H2A n=6 Tax=Ectocarpus TaxID=2879 RepID=D7... [more]
A0A835ZLE9_9STRA5.160e-5783.49Histone H2A n=2 Tax=Tribonema minus TaxID=303371 R... [more]
D8LLP0_ECTSI5.320e-5785.32Histone H2A n=2 Tax=Ectocarpus TaxID=2879 RepID=D8... [more]
A0A448ZH28_9STRA1.680e-5685.32Histone H2A n=12 Tax=Bacillariophyta TaxID=2836 Re... [more]
A0A6V1P7M0_HETAK1.790e-5687.16Histone H2A n=2 Tax=Heterosigma akashiwo TaxID=282... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13934contigP-wetherbeei_contig13934:2..328 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog157072.XP_008871808.1
Preferred nameH2AFY
PFAMsHistone,Histone_H2A_C,Macro
Model size327
Max annot lvl2759|Eukaryota
KEGG koko:K11251,ko:K16617
KEGG Pathwayko04217,ko04974,ko05034,ko05322,map04217,map04974,map05034,map05322
Hectar predicted targeting categoryother localisation
GOsGO:0000122,GO:0000182,GO:0000228,GO:0000775,GO:0000785,GO:0000786,GO:0000790,GO:0000792,GO:0000793,GO:0000803,GO:0000805,GO:0000976,GO:0000977,GO:0000979,GO:0001012,GO:0001046,GO:0001047,GO:0001067,GO:0001739,GO:0001740,GO:0001932,GO:0001933,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003690,GO:0004857,GO:0004860,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005720,GO:0005721,GO:0005730,GO:0005813,GO:0005815,GO:0005856,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006342,GO:0006355,GO:0006356,GO:0006357,GO:0006469,GO:0006996,GO:0007063,GO:0007088,GO:0007275,GO:0007346,GO:0007399,GO:0007417,GO:0007420,GO:0007549,GO:0008104,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0010385,GO:0010468,GO:0010556,GO:0010558,GO:0010563,GO:0010564,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010638,GO:0010639,GO:0010948,GO:0015630,GO:0016043,GO:0016458,GO:0016479,GO:0019207,GO:0019210,GO:0019216,GO:0019219,GO:0019220,GO:0019222,GO:0019887,GO:0019899,GO:0019900,GO:0019901,GO:0022607,GO:0030234,GO:0030291,GO:0030856,GO:0030858,GO:0031056,GO:0031057,GO:0031060,GO:0031061,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031399,GO:0031400,GO:0031490,GO:0031491,GO:0031492,GO:0031497,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032879,GO:0032880,GO:0032991,GO:0032993,GO:0033036,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0033127,GO:0033128,GO:0033365,GO:0033673,GO:0034091,GO:0034093,GO:0034182,GO:0034184,GO:0034502,GO:0034613,GO:0034622,GO:0034728,GO:0040029,GO:0042325,GO:0042326,GO:0043086,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043549,GO:0043565,GO:0043933,GO:0044085,GO:0044092,GO:0044212,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0044877,GO:0045184,GO:0045595,GO:0045597,GO:0045604,GO:0045606,GO:0045616,GO:0045618,GO:0045682,GO:0045684,GO:0045786,GO:0045787,GO:0045814,GO:0045815,GO:0045840,GO:0045859,GO:0045876,GO:0045892,GO:0045931,GO:0045934,GO:0045936,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048731,GO:0048856,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0051094,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051172,GO:0051174,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051246,GO:0051248,GO:0051252,GO:0051253,GO:0051276,GO:0051338,GO:0051348,GO:0051569,GO:0051572,GO:0051641,GO:0051726,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0060255,GO:0060322,GO:0060341,GO:0061085,GO:0061086,GO:0062033,GO:0065003,GO:0065004,GO:0065007,GO:0065009,GO:0070013,GO:0070199,GO:0070727,GO:0071103,GO:0071168,GO:0071169,GO:0071824,GO:0071840,GO:0071900,GO:0071901,GO:0072594,GO:0080090,GO:0080134,GO:0090068,GO:0097159,GO:0098687,GO:0098772,GO:1901363,GO:1901836,GO:1901837,GO:1901987,GO:1901988,GO:1902275,GO:1902679,GO:1902749,GO:1902750,GO:1902882,GO:1902883,GO:1902884,GO:1903506,GO:1903507,GO:1903827,GO:1903828,GO:1904814,GO:1904815,GO:1905268,GO:1990837,GO:1990841,GO:2000026,GO:2000112,GO:2000113,GO:2001141,GO:2001251,GO:2001252
Exons1
Evalue6.77e-58
EggNOG OGsCOG5262@1|root,KOG1756@2759|Eukaryota
DescriptionHistone H2A
Cds size327
COG categoryB
BRITEko00000,ko00001,ko00536,ko03036,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186002.5040896-CDS-P-wetherbeei_contig13934:1..3281683186002.5040896-CDS-P-wetherbeei_contig13934:1..328Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13934 2..328 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13934.1.1prot_P-wetherbeei_contig13934.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13934 2..328 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13934.1.1

>prot_P-wetherbeei_contig13934.1.1 ID=prot_P-wetherbeei_contig13934.1.1|Name=mRNA_P-wetherbeei_contig13934.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=109bp
GKGGRGGEKKKATTRSAKAGLQFPVGRIGRFLKQGRYSQRVGGGAPVYLA
AVLEYLCAEILELAGNAARDNKKSRIVPRHVQLAVRNDEELNKLLGNVTI
ASGGVLPNI
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mRNA from alignment at P-wetherbeei_contig13934:2..328-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13934.1.1 ID=mRNA_P-wetherbeei_contig13934.1.1|Name=mRNA_P-wetherbeei_contig13934.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=327bp|location=Sequence derived from alignment at P-wetherbeei_contig13934:2..328- (Phaeothamnion wetherbeei SAG_119_79)
GGGAAGGGCGGCCGCGGGGGAGAGAAGAAGAAGGCGACGACGCGCTCGGC
CAAGGCCGGACTGCAGTTCCCCGTCGGCCGGATCGGCCGCTTCCTCAAGC
AGGGCCGCTACTCGCAGCGCGTCGGCGGCGGCGCGCCCGTCTACCTCGCG
GCGGTGCTCGAGTACCTCTGCGCCGAGATCCTCGAGCTTGCCGGCAACGC
CGCCCGCGACAACAAGAAGAGCCGCATCGTACCCCGCCACGTGCAGCTGG
CCGTCCGTAACGATGAGGAGCTCAACAAGTTGCTCGGCAATGTGACCATC
GCCAGCGGTGGCGTCCTGCCCAACATC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13934:2..328-

>mRNA_P-wetherbeei_contig13934.1.1 ID=mRNA_P-wetherbeei_contig13934.1.1|Name=mRNA_P-wetherbeei_contig13934.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=327bp|location=Sequence derived from alignment at P-wetherbeei_contig13934:2..328- (Phaeothamnion wetherbeei SAG_119_79)
GGGAAGGGCGGCCGCGGGGGAGAGAAGAAGAAGGCGACGACGCGCTCGGC
CAAGGCCGGACTGCAGTTCCCCGTCGGCCGGATCGGCCGCTTCCTCAAGC
AGGGCCGCTACTCGCAGCGCGTCGGCGGCGGCGCGCCCGTCTACCTCGCG
GCGGTGCTCGAGTACCTCTGCGCCGAGATCCTCGAGCTTGCCGGCAACGC
CGCCCGCGACAACAAGAAGAGCCGCATCGTACCCCGCCACGTGCAGCTGG
CCGTCCGTAACGATGAGGAGCTCAACAAGTTGCTCGGCAATGTGACCATC
GCCAGCGGTGGCGTCCTGCCCAACATC
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