mRNA_P-wetherbeei_contig13931.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13931.2.1
Unique NamemRNA_P-wetherbeei_contig13931.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig13931.2.1 vs. uniprot
Match: D7G758_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G758_ECTSI)

HSP 1 Score: 292 bits (747), Expect = 3.560e-95
Identity = 153/273 (56.04%), Postives = 203/273 (74.36%), Query Frame = 1 
Query:    1 GSFLPGISLLFGALLSFTISLLINRQTKIEDLVNEEVAHLSTAALHVSDLWRNDPERRQRALEAVWRHTDELIFRSRYQEILALVQDDPITDLMQMVIGVDEEMLAGPAHADKANINREVLNFLRNLMMELNRLRTLRLSSEGRVLPPIHFVILASLATLLVVGFTLASVQQAPI---IATATASRLLFTGLVFSYSQLLEFALDLTNPFVGRYKIRRTTTTAGLIRIRNGVLRELGPKHIANFDQQLRSRRREQLREFAATVGQPLPIDGHL 810
            GSFLPG+SLLFGAL S+TISLL+NRQ KIE++VN EV+ L    LH+ D +R  P   + A+EA WRHTD LIF+SRYQEIL LVQDDP+ DLM+++I VD+E+LA  AH +K+ ++R+ L +LR +  +L +LRT RLSSEGRVLPP+HF IL  LA++L+ GFTLAS Q   +   +A A  SR+LFT L+FS+S LLEFALDLTNPFVGRYK+RRTTTTA +++IR+ ++  +G +H+ +FD     ++R  LR+F    G  LP D  +
Sbjct:   56 GSFLPGVSLLFGALFSYTISLLVNRQIKIEEIVNAEVSALLAILLHMEDYFRYSPVALEAAMEAAWRHTDTLIFQSRYQEILLLVQDDPLEDLMRLIIAVDDEVLASDAHRNKSGVHRDSLGYLRGVSSDLLKLRTTRLSSEGRVLPPVHFGILVILASMLLFGFTLASAQPPTVDGPVAAAFESRVLFTLLLFSFSLLLEFALDLTNPFVGRYKVRRTTTTAIMVKIRSEIVAVMGRQHMKDFDVMFNIQKRRTLRDFKRETGMTLPSDNQI 328
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BLAST of mRNA_P-wetherbeei_contig13931.2.1 vs. uniprot
Match: A0A6H5JLZ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLZ7_9PHAE)

HSP 1 Score: 294 bits (752), Expect = 2.670e-94
Identity = 154/273 (56.41%), Postives = 203/273 (74.36%), Query Frame = 1 
Query:    1 GSFLPGISLLFGALLSFTISLLINRQTKIEDLVNEEVAHLSTAALHVSDLWRNDPERRQRALEAVWRHTDELIFRSRYQEILALVQDDPITDLMQMVIGVDEEMLAGPAHADKANINREVLNFLRNLMMELNRLRTLRLSSEGRVLPPIHFVILASLATLLVVGFTLASVQQAPI---IATATASRLLFTGLVFSYSQLLEFALDLTNPFVGRYKIRRTTTTAGLIRIRNGVLRELGPKHIANFDQQLRSRRREQLREFAATVGQPLPIDGHL 810
            GSFLPG+SLLFGAL S+TISLL+NRQ KIE++VN EV+ L +  LH+ D +R  P   + A+EA WRHTD LIF+SRYQEIL LVQDDP+ DLM+++I VD+E+LA  AH +K+ ++R+ L +LR +  +L +LRT RLSSEGRVLPP+HF IL  LA++L+ GFTLAS Q   +   +A A  SR+LFT LVF++S LLEFALDLTNPFVGRYK+RRTTTTA +++IR+ ++  +G KH+  FD     ++R  LR+F    G  LP D  +
Sbjct:  178 GSFLPGVSLLFGALFSYTISLLVNRQIKIEEIVNAEVSALLSIVLHMEDYFRYSPVALEAAMEAAWRHTDTLIFQSRYQEILLLVQDDPLEDLMRLIIAVDDEVLASDAHRNKSGVHRDSLGYLRGVSSDLLKLRTTRLSSEGRVLPPVHFGILVILASMLLFGFTLASAQPPTVDGPVAAAFESRVLFTLLVFNFSLLLEFALDLTNPFVGRYKVRRTTTTAIMVKIRSEIVAVMGRKHMKTFDVMFNIQKRRTLRDFKRETGMTLPSDNQI 450
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BLAST of mRNA_P-wetherbeei_contig13931.2.1 vs. uniprot
Match: A0A835YX84_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX84_9STRA)

HSP 1 Score: 283 bits (723), Expect = 5.210e-91
Identity = 158/277 (57.04%), Postives = 201/277 (72.56%), Query Frame = 1 
Query:    1 GSFLPGISLLFGALLSFTISLLINRQTKIEDLVNEEVAHLSTAALHVSDLWRNDPERRQRALEAVWRHTDELIFRSRYQEILALVQDDPITDLMQMVIGVDEEMLAGPAHADKANINREVLNFLRNLMMELNRLRTLRLSSEGRVLPPIHFVILASLATLLVVGFTLASVQQAPIIATATA-------SRLLFTGLVFSYSQLLEFALDLTNPFVGRYKIRRTTTTAGLIRIRNGVLRELGPKHIANFDQQLRSRRREQLREFAATVGQPLPIDGHL 810
            GSFLPGISLLFG L S+TISLL+NRQ +IE+LVN+E+A ++T   H+ D +  DPE+R++AL+AVWRHTD+LIF SRYQEILALVQ D I +LM+M+I VDE+  A   H  K NINRE+L +LR L  E+NRLR +R+S+EGRVLPP+HF IL SLA LL+ GFTL S  QAP++    A       SR+LF  LV ++S LL FALDLTNPF GRYK+RRTT TA LI+IRN +++ LG + +  FD + R   + +L  F    G  LP+D HL
Sbjct:   98 GSFLPGISLLFGTLFSYTISLLVNRQNRIEELVNQELAAMTTLLWHLIDFFDGDPEKREQALKAVWRHTDQLIFNSRYQEILALVQGDSIEELMRMIIRVDEKDTAQNTH--KPNINRELLGYLRPLGAEINRLRAMRISAEGRVLPPVHFFILGSLAMLLLFGFTLTS-MQAPLVDDTAAVLQVPQESRILFALLVNAFSALLGFALDLTNPFNGRYKVRRTTATAYLIKIRNDIVQTLGVQTVTAFDAENRCAVQRELTRFREITGTHLPVDRHL 371
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13931.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G758_ECTSI3.560e-9556.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JLZ7_9PHAE2.670e-9456.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YX84_9STRA5.210e-9157.04Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13931contigP-wetherbeei_contig13931:235..1773 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7G758
PFAMsDUF4239
Model size813
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons4
Evalue5.83e-96
EggNOG OGs2E8UB@1|root,2SF9E@2759|Eukaryota
Ec32 ortholog descriptionProtein of unknown function DUF4239
Ec32 orthologEc-01_010950.1
DescriptionProtein of unknown function (DUF4239)
Cds size813
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186002.4462636-CDS-P-wetherbeei_contig13931:234..5041683186002.4462636-CDS-P-wetherbeei_contig13931:234..504Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13931 235..504 -
1683186002.4567397-CDS-P-wetherbeei_contig13931:639..7981683186002.4567397-CDS-P-wetherbeei_contig13931:639..798Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13931 640..798 -
1683186002.4667296-CDS-P-wetherbeei_contig13931:999..11071683186002.4667296-CDS-P-wetherbeei_contig13931:999..1107Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13931 1000..1107 -
1683186002.4762566-CDS-P-wetherbeei_contig13931:1497..17731683186002.4762566-CDS-P-wetherbeei_contig13931:1497..1773Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13931 1498..1773 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13931.2.1prot_P-wetherbeei_contig13931.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13931 235..1773 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13931.2.1

>prot_P-wetherbeei_contig13931.2.1 ID=prot_P-wetherbeei_contig13931.2.1|Name=mRNA_P-wetherbeei_contig13931.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=271bp
GSFLPGISLLFGALLSFTISLLINRQTKIEDLVNEEVAHLSTAALHVSDL
WRNDPERRQRALEAVWRHTDELIFRSRYQEILALVQDDPITDLMQMVIGV
DEEMLAGPAHADKANINREVLNFLRNLMMELNRLRTLRLSSEGRVLPPIH
FVILASLATLLVVGFTLASVQQAPIIATATASRLLFTGLVFSYSQLLEFA
LDLTNPFVGRYKIRRTTTTAGLIRIRNGVLRELGPKHIANFDQQLRSRRR
EQLREFAATVGQPLPIDGHL*
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mRNA from alignment at P-wetherbeei_contig13931:235..1773-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13931.2.1 ID=mRNA_P-wetherbeei_contig13931.2.1|Name=mRNA_P-wetherbeei_contig13931.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1539bp|location=Sequence derived from alignment at P-wetherbeei_contig13931:235..1773- (Phaeothamnion wetherbeei SAG_119_79)
GGCTCCTTCCTGCCGGGCATCTCCCTGCTCTTTGGCGCGCTCCTATCCTT
CACCATTTCGCTCCTCATCAACCGACAGACCAAGATTGAGGATTTGGTCA
ACGAAGAAGTCGCCCACCTGTCGACGGCAGCTCTGCACGTCTCGGACCTT
TGGCGGAACGACCCCGAGCGCCGGCAGCGGGCGCTCGAGGCCGTGTGGAG
GCACACTGATGAGCTGATTTTTCGTTCACGTTATCAGGAGATCCTGGCCC
TGGTGCAAGATGACCCCATCACGGACGTTAGTGGAAACATGCGTGGACCT
TGTAGGGGCGGCTGGCGCCTGTTTTGATCGCTTCATGTGGATTCCTTTTT
TTGCCCGGCTTGGCTTTTCTGGAAAGGCATCAGGCCAAGAAAGCGTTGTT
CAGGCGCTTCAGCTTCGGGCGCGCGTTCTTTTCTCGTTGAGTCGTTCCCT
GGTAGTGCCTTCTTGTCCTTTTGCGTTATAAAAGGGTTGTTTTGGCATTC
AGCTCTCTTGTGTCCTTTCTACTCCACGGAGCGAATCTCAACTATTTTTG
CCCGGGTCTTTTTCCTGCCGCTTTCCACATTGCCCTCTGCTGCCTTTGCC
GCTGTCGCTGCCGTCGCCGATACCCCGTCCGCCGCCACCATTTCCACTGC
CGCCATTGCCTTGCAGCTGATGCAGATGGTAATTGGCGTCGATGAGGAGA
TGCTGGCGGGGCCCGCCCACGCTGACAAGGCCAACATCAACCGGGAGGTC
CTCAATTTCCTGCGAAACCTCATGGTGCGTTTCGGCCTTCTCACGGCGCA
AGTCCTGCCTGCATACATTCTGACTTGCATCTTTTGTTTTACTACCGTTA
CTTTGTTGGCATTCTTTTCTCTCTTGGGCTGGTTTTGCCTCTAACCGCAG
GCATTTCCATGCCGCCGCCGTTCCGGGTAAACTGCATTCTAATTTTTTCA
ATATGACCCCAAAACAAACATGCAGATGGAGCTGAACCGGCTGCGGACGC
TGCGGCTGAGCAGCGAGGGCCGCGTCCTGCCGCCGATCCACTTCGTCATT
CTCGCCTCGCTGGCCACGCTCCTCGTCGTCGGCTTCACCCTGGCCTCGGT
ACAGCAGGCGCCGATCATCGCCACCGCAACCGCCGTTACCGGCGGCGCTG
GAGTCGCGGCCTCCACCGCTGCCGCTGCCGCTGCCGCCGACGCCGCCGGC
GCGGCGTCGGCCGCCACGGCAACGGCAGCCGCCGTCGCTCCTCCGGCACC
GTCAGGGGTGGCGTTTGAGTCGCGGCTCCTGTTCACGGGGCTGGTGTTTT
CCTACTCGCAACTGCTGGAGTTCGCTCTCGACCTGACCAACCCGTTCGTC
GGCCGCTACAAGATCCGGCGGACGACGACAACGGCGGGCCTGATTCGGAT
CCGGAACGGCGTCCTGCGGGAGCTGGGCCCGAAGCACATTGCCAACTTCG
ATCAGCAGCTGCGGAGCCGCCGGCGGGAGCAGCTCAGAGAGTTCGCCGCC
ACGGTGGGGCAGCCGCTGCCCATCGACGGCCATTTGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13931:235..1773-

>mRNA_P-wetherbeei_contig13931.2.1 ID=mRNA_P-wetherbeei_contig13931.2.1|Name=mRNA_P-wetherbeei_contig13931.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=813bp|location=Sequence derived from alignment at P-wetherbeei_contig13931:235..1773- (Phaeothamnion wetherbeei SAG_119_79)
GGCTCCTTCCTGCCGGGCATCTCCCTGCTCTTTGGCGCGCTCCTATCCTT
CACCATTTCGCTCCTCATCAACCGACAGACCAAGATTGAGGATTTGGTCA
ACGAAGAAGTCGCCCACCTGTCGACGGCAGCTCTGCACGTCTCGGACCTT
TGGCGGAACGACCCCGAGCGCCGGCAGCGGGCGCTCGAGGCCGTGTGGAG
GCACACTGATGAGCTGATTTTTCGTTCACGTTATCAGGAGATCCTGGCCC
TGGTGCAAGATGACCCCATCACGGACCTGATGCAGATGGTAATTGGCGTC
GATGAGGAGATGCTGGCGGGGCCCGCCCACGCTGACAAGGCCAACATCAA
CCGGGAGGTCCTCAATTTCCTGCGAAACCTCATGATGGAGCTGAACCGGC
TGCGGACGCTGCGGCTGAGCAGCGAGGGCCGCGTCCTGCCGCCGATCCAC
TTCGTCATTCTCGCCTCGCTGGCCACGCTCCTCGTCGTCGGCTTCACCCT
GGCCTCGGTACAGCAGGCGCCGATCATCGCCACCGCAACCGCCTCGCGGC
TCCTGTTCACGGGGCTGGTGTTTTCCTACTCGCAACTGCTGGAGTTCGCT
CTCGACCTGACCAACCCGTTCGTCGGCCGCTACAAGATCCGGCGGACGAC
GACAACGGCGGGCCTGATTCGGATCCGGAACGGCGTCCTGCGGGAGCTGG
GCCCGAAGCACATTGCCAACTTCGATCAGCAGCTGCGGAGCCGCCGGCGG
GAGCAGCTCAGAGAGTTCGCCGCCACGGTGGGGCAGCCGCTGCCCATCGA
CGGCCATTTGTGA
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