mRNA_P-wetherbeei_contig1393.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1393.3.1
Unique NamemRNA_P-wetherbeei_contig1393.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1393.3.1 vs. uniprot
Match: A0A6H5KX93_9PHAE (C2H2-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KX93_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 3.370e-21
Identity = 57/110 (51.82%), Postives = 70/110 (63.64%), Query Frame = 1 
Query:  769 RAARPNTAALDQLSAGIRRTNERLDREQFKAAEIKLRALGG-GDSITDGYSTGVRPDVVPNTALPYACDRCSDSFAMATRLSDHLRAAHGVIKHASLITPSNAAKKTAGL 1095
            RAARPN+AAL  +    RRTN R+DREQF  A+ +LR L   G+ + D +STG RPD       P+ C +C  SF MAT LSDHL  AHG+ KH SLITP+     +AGL
Sbjct:  290 RAARPNSAALVNILRSDRRTNIRMDREQFDGAQTRLRKLAPEGNDVCDNFSTGCRPDKTGKKDHPFVCTQCPMSFPMATLLSDHLERAHGIFKHPSLITPNKTL--SAGL 397
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1393.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KX93_9PHAE3.370e-2151.82C2H2-type domain-containing protein n=2 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1393contigP-wetherbeei_contig1393:1912..3112 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1201
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionC2H2 zinc finger protein
Ec32 orthologEc-21_006030.1
Cds size729
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186002.3116972-UTR-P-wetherbeei_contig1393:1911..22831683186002.3116972-UTR-P-wetherbeei_contig1393:1911..2283Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1393 1912..2283 +
1683186002.3302221-UTR-P-wetherbeei_contig1393:3012..31121683186002.3302221-UTR-P-wetherbeei_contig1393:3012..3112Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1393 3013..3112 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186002.3213446-CDS-P-wetherbeei_contig1393:2283..30121683186002.3213446-CDS-P-wetherbeei_contig1393:2283..3012Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1393 2284..3012 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1393.3.1prot_P-wetherbeei_contig1393.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1393 2284..3012 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1393.3.1

>prot_P-wetherbeei_contig1393.3.1 ID=prot_P-wetherbeei_contig1393.3.1|Name=mRNA_P-wetherbeei_contig1393.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=243bp
MRRRSRERSRSREREREQERQHGGFSSIEGDRRPRDARYDDRHGGYGDCD
GGYDRPCRGREERQASSPAANKGSSRAGDGPPPQEPVKKPKIAPGIAAYL
QIASLGRGSAGAAATTGSRPGAPAAADGAGAGRAARPNTAALDQLSAGIR
RTNERLDREQFKAAEIKLRALGGGDSITDGYSTGVRPDVVPNTALPYACD
RCSDSFAMATRLSDHLRAAHGVIKHASLITPSNAAKKTAGLL*
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mRNA from alignment at P-wetherbeei_contig1393:1912..3112+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1393.3.1 ID=mRNA_P-wetherbeei_contig1393.3.1|Name=mRNA_P-wetherbeei_contig1393.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1201bp|location=Sequence derived from alignment at P-wetherbeei_contig1393:1912..3112+ (Phaeothamnion wetherbeei SAG_119_79)
GCCCTGGAAGAAGGCGAAGTGGCTTTGCCAGAAAATGCCCCCACGCAGAA
GGGCTCGGCATCAGCTCGAGGAGAACCACGAGGCGAAGAAAACGGCGGGC
ATCCGGAAGCGAAAGCCGTCAGCAGGAAAAGGGAGGGGGGCGATGCACTA
GAAAGTCGCCCTCGAAGGACGAGAAGGAGCCGAAGCAGAAGCACGCCGCC
CGAGAGGGAAAGACACAGCTGGGGGGACGAGAGAAGAGAGAGAACCGGTT
TGGACAGTTATGCCAAACGAGAAAGCGACAGAAGTAAGCACGGAGAGAAC
CGGCACAAGGCGCGGAGGGAGAGATCATGGGAACGGCGCGATATTGGACA
AAACCACCGGGACAACCGCCCGATGAGACGCCGGTCCCGAGAACGCTCAC
GCTCGCGCGAGCGCGAGCGTGAGCAGGAGCGGCAGCATGGCGGCTTTTCT
TCCATCGAGGGTGACCGACGACCGAGAGACGCTCGCTACGATGACCGACA
TGGCGGCTACGGCGACTGTGACGGCGGCTACGACCGCCCATGTCGCGGAC
GAGAGGAAAGGCAAGCTTCTTCTCCGGCGGCTAATAAGGGTTCATCTCGC
GCCGGGGATGGCCCGCCGCCGCAGGAGCCTGTAAAGAAGCCGAAGATCGC
CCCCGGCATTGCGGCTTACTTACAAATTGCGTCGCTGGGGAGAGGGAGCG
CAGGAGCAGCCGCTACGACTGGGAGCCGTCCGGGGGCGCCTGCTGCGGCT
GACGGCGCAGGTGCCGGCAGGGCGGCGCGGCCGAACACTGCGGCGCTGGA
TCAGCTTTCGGCTGGCATTCGACGCACCAACGAGCGCCTCGACCGCGAGC
AGTTCAAGGCCGCTGAAATCAAGCTGCGAGCGCTCGGCGGCGGAGACTCG
ATCACCGACGGCTACAGCACGGGAGTTCGGCCGGACGTCGTGCCCAACAC
GGCACTCCCGTACGCGTGCGATCGGTGCAGCGACTCGTTCGCCATGGCGA
CGCGTTTGAGTGACCACCTGAGAGCGGCCCATGGCGTCATCAAGCACGCG
TCGCTCATCACACCCTCCAACGCCGCCAAAAAGACGGCGGGGTTGTTGTA
AGTTATGGTGAGCGGCCAGGAGCTTATGACTAGGCTACCTCGGCTGGCGG
GGACCTCGACATCTGACCAGCAGCTGGCTAATTGAACACATTACGTACCA
A
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1393:1912..3112+

>mRNA_P-wetherbeei_contig1393.3.1 ID=mRNA_P-wetherbeei_contig1393.3.1|Name=mRNA_P-wetherbeei_contig1393.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=729bp|location=Sequence derived from alignment at P-wetherbeei_contig1393:1912..3112+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGACGCCGGTCCCGAGAACGCTCACGCTCGCGCGAGCGCGAGCGTGA
GCAGGAGCGGCAGCATGGCGGCTTTTCTTCCATCGAGGGTGACCGACGAC
CGAGAGACGCTCGCTACGATGACCGACATGGCGGCTACGGCGACTGTGAC
GGCGGCTACGACCGCCCATGTCGCGGACGAGAGGAAAGGCAAGCTTCTTC
TCCGGCGGCTAATAAGGGTTCATCTCGCGCCGGGGATGGCCCGCCGCCGC
AGGAGCCTGTAAAGAAGCCGAAGATCGCCCCCGGCATTGCGGCTTACTTA
CAAATTGCGTCGCTGGGGAGAGGGAGCGCAGGAGCAGCCGCTACGACTGG
GAGCCGTCCGGGGGCGCCTGCTGCGGCTGACGGCGCAGGTGCCGGCAGGG
CGGCGCGGCCGAACACTGCGGCGCTGGATCAGCTTTCGGCTGGCATTCGA
CGCACCAACGAGCGCCTCGACCGCGAGCAGTTCAAGGCCGCTGAAATCAA
GCTGCGAGCGCTCGGCGGCGGAGACTCGATCACCGACGGCTACAGCACGG
GAGTTCGGCCGGACGTCGTGCCCAACACGGCACTCCCGTACGCGTGCGAT
CGGTGCAGCGACTCGTTCGCCATGGCGACGCGTTTGAGTGACCACCTGAG
AGCGGCCCATGGCGTCATCAAGCACGCGTCGCTCATCACACCCTCCAACG
CCGCCAAAAAGACGGCGGGGTTGTTGTAA
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