mRNA_P-wetherbeei_contig1393.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1393.1.1
Unique NamemRNA_P-wetherbeei_contig1393.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1393.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1393contigP-wetherbeei_contig1393:1..865 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog29850.GGTG_04487T0
PFAMsIBR,RRM_1,zf-C3HC4,zf-CCCH,zf-RING_UBOX
Model size865
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
Exons1
Evalue0.000335
EggNOG OGsKOG1812@1|root,KOG1812@2759|Eukaryota,39SR6@33154|Opisthokonta,3NTYY@4751|Fungi,3QMB2@4890|Ascomycota,217XC@147550|Sordariomycetes,41PSG@639021|Magnaporthales
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-21_006050.1
DescriptionIn Between Ring fingers
Cds size732
COG categoryO
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186002.2295992-UTR-P-wetherbeei_contig1393:0..481683186002.2295992-UTR-P-wetherbeei_contig1393:0..48Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1393 1..48 +
1683186002.2498221-UTR-P-wetherbeei_contig1393:780..8651683186002.2498221-UTR-P-wetherbeei_contig1393:780..865Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1393 781..865 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186002.2406943-CDS-P-wetherbeei_contig1393:48..7801683186002.2406943-CDS-P-wetherbeei_contig1393:48..780Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1393 49..780 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1393.1.1prot_P-wetherbeei_contig1393.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1393 49..780 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1393.1.1

>prot_P-wetherbeei_contig1393.1.1 ID=prot_P-wetherbeei_contig1393.1.1|Name=mRNA_P-wetherbeei_contig1393.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=244bp
MTWQLGGNCDGNCGQRHPSQPRAARALLPAASIPAPCKFFAIGRCAKGTS
CPFSHAVTAAVPGLPVPGVPEAAAWGIPPQALPALPQWLTDNVPYVPEQA
APPQQVALPRRSGPVTAEERAVLEARARAVLDKYSLTAHAASRDAPVLIQ
QPLELDDAAETAVEEVDADVLEAAAAAGSAAAGLPFVPLKRKRPQVVEAE
DAKPAAEADGSANGEGGEEGGAEQQRAALRRKRGGAIPTQSPL*
back to top

mRNA from alignment at P-wetherbeei_contig1393:1..865+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1393.1.1 ID=mRNA_P-wetherbeei_contig1393.1.1|Name=mRNA_P-wetherbeei_contig1393.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=865bp|location=Sequence derived from alignment at P-wetherbeei_contig1393:1..865+ (Phaeothamnion wetherbeei SAG_119_79)
TGCCCCTTTCGTCACAACGCGAGTGCTCTCCTGTCGCTTATACCGTGCAT
GACCTGGCAGCTGGGCGGCAATTGCGATGGGAACTGTGGCCAGCGGCACC
CGTCGCAACCTCGCGCGGCTCGTGCGCTGCTGCCGGCGGCGTCAATCCCC
GCGCCCTGCAAGTTCTTTGCGATAGGACGCTGCGCGAAGGGGACCTCGTG
CCCGTTCTCTCACGCTGTCACGGCGGCCGTCCCGGGGTTGCCTGTGCCAG
GAGTGCCGGAAGCTGCTGCATGGGGAATCCCACCGCAGGCCCTGCCGGCG
CTGCCCCAGTGGCTGACCGACAACGTCCCATACGTGCCGGAGCAGGCTGC
GCCGCCGCAACAAGTGGCGTTGCCAAGGAGGTCAGGACCCGTCACGGCAG
AGGAGCGGGCGGTACTCGAGGCAAGGGCGAGGGCGGTACTGGACAAGTAT
TCGCTGACCGCGCACGCGGCAAGCCGCGACGCCCCGGTCCTGATCCAGCA
ACCATTGGAGCTGGACGATGCGGCGGAAACCGCGGTCGAGGAAGTCGATG
CCGACGTCCTGGAGGCGGCGGCGGCGGCAGGATCGGCTGCGGCGGGGCTG
CCTTTCGTCCCTCTCAAGAGAAAGCGGCCACAGGTGGTCGAAGCCGAAGA
TGCAAAGCCGGCGGCGGAAGCCGACGGGAGCGCGAACGGAGAAGGAGGAG
AAGAAGGGGGAGCGGAGCAGCAGCGGGCCGCTCTCCGAAGAAAGCGAGGA
GGAGCGATTCCGACGCAAAGCCCACTGTGAGCCCACACAGCGGATGAAAA
GTCCTCGTGATAAATCGAGAGGAAGCTTTTTGAATTGCAATTTATGAGGG
TGTTTGTATGAAGGG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig1393:1..865+

>mRNA_P-wetherbeei_contig1393.1.1 ID=mRNA_P-wetherbeei_contig1393.1.1|Name=mRNA_P-wetherbeei_contig1393.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=732bp|location=Sequence derived from alignment at P-wetherbeei_contig1393:1..865+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACCTGGCAGCTGGGCGGCAATTGCGATGGGAACTGTGGCCAGCGGCA
CCCGTCGCAACCTCGCGCGGCTCGTGCGCTGCTGCCGGCGGCGTCAATCC
CCGCGCCCTGCAAGTTCTTTGCGATAGGACGCTGCGCGAAGGGGACCTCG
TGCCCGTTCTCTCACGCTGTCACGGCGGCCGTCCCGGGGTTGCCTGTGCC
AGGAGTGCCGGAAGCTGCTGCATGGGGAATCCCACCGCAGGCCCTGCCGG
CGCTGCCCCAGTGGCTGACCGACAACGTCCCATACGTGCCGGAGCAGGCT
GCGCCGCCGCAACAAGTGGCGTTGCCAAGGAGGTCAGGACCCGTCACGGC
AGAGGAGCGGGCGGTACTCGAGGCAAGGGCGAGGGCGGTACTGGACAAGT
ATTCGCTGACCGCGCACGCGGCAAGCCGCGACGCCCCGGTCCTGATCCAG
CAACCATTGGAGCTGGACGATGCGGCGGAAACCGCGGTCGAGGAAGTCGA
TGCCGACGTCCTGGAGGCGGCGGCGGCGGCAGGATCGGCTGCGGCGGGGC
TGCCTTTCGTCCCTCTCAAGAGAAAGCGGCCACAGGTGGTCGAAGCCGAA
GATGCAAAGCCGGCGGCGGAAGCCGACGGGAGCGCGAACGGAGAAGGAGG
AGAAGAAGGGGGAGCGGAGCAGCAGCGGGCCGCTCTCCGAAGAAAGCGAG
GAGGAGCGATTCCGACGCAAAGCCCACTGTGA
back to top