mRNA_P-wetherbeei_contig13916.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13916.1.1
Unique NamemRNA_P-wetherbeei_contig13916.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13916.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13916contigP-wetherbeei_contig13916:3..1323 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size505
Hectar predicted targeting categoryother localisation
Exons4
Cds size504
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186001.7462907-CDS-P-wetherbeei_contig13916:2..2741683186001.7462907-CDS-P-wetherbeei_contig13916:2..274Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13916 3..274 +
1683186001.76084-CDS-P-wetherbeei_contig13916:561..6391683186001.76084-CDS-P-wetherbeei_contig13916:561..639Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13916 562..639 +
1683186001.7707422-CDS-P-wetherbeei_contig13916:918..10471683186001.7707422-CDS-P-wetherbeei_contig13916:918..1047Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13916 919..1047 +
1683186001.7815735-CDS-P-wetherbeei_contig13916:1298..13231683186001.7815735-CDS-P-wetherbeei_contig13916:1298..1323Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13916 1299..1323 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13916.1.1prot_P-wetherbeei_contig13916.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13916 3..1323 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13916.1.1

>prot_P-wetherbeei_contig13916.1.1 ID=prot_P-wetherbeei_contig13916.1.1|Name=mRNA_P-wetherbeei_contig13916.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=168bp
NPIPTGGAGSLAFQPPKKEPRWWEPARDTALPQQTRPRLSSSPSPTASPE
GDEGVVFNRLALLKRMRKRQETLKQFINGHRGQVGAPHNFGSARWGSRML
LLLKSRHDILSVFFYFSKWFSRAQRVAYLMAALLSLMAADATVFSVMYQD
IGPCSSYTTRSTCLEKMN
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mRNA from alignment at P-wetherbeei_contig13916:3..1323+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13916.1.1 ID=mRNA_P-wetherbeei_contig13916.1.1|Name=mRNA_P-wetherbeei_contig13916.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1321bp|location=Sequence derived from alignment at P-wetherbeei_contig13916:3..1323+ (Phaeothamnion wetherbeei SAG_119_79)
AACCCAATCCCAACAGGTGGGGCGGGCTCCCTCGCCTTCCAGCCGCCGAA
AAAGGAACCCCGCTGGTGGGAGCCGGCCCGCGACACAGCCCTACCGCAGC
AGACGCGGCCGCGGCTGTCGTCGTCGCCGTCGCCGACGGCATCTCCCGAA
GGCGACGAGGGCGTCGTCTTCAACCGGCTGGCGCTGTTGAAGCGCATGCG
GAAACGGCAGGAAACGCTCAAGCAGTTCATTAACGGCCATCGCGGTCAGG
TCGGGGCGCCGCACAACTTCGGGTGAGCGCCGGAAGAGCTGCTTTGGGTG
GGCTCGCTCCGTCTTGATCTGTCTAGTCCTCGTCTTGCCTCTTAACATTG
GTTGGCTGGTGCGGGAAAGGAGCATTCTTCGACTTAGGCGGTTCGAGATA
AGGCATAATGGAAGGAGCGGTGTTTTCTGCCTTGGCGGCCTCCCTGCTCT
ATTCTCATGTTCGTTCATTAAATCATCTGTCGGATCCATAATCGCGGAGT
AAACCACTTCTCTTGTAACGTTCGCTATTACGAACGACGGCCGTCGTCTT
CGGGGCCAGATCCGCGCGCTGGGGGAGCCGTATGCTGCTTCTCTTGAAGA
GCCGCCACGATATCTTGAGTGTCTTCTTCTACTTCAGGTGCAGCTGGGAT
CGCGGCGCAGTTCTTTGAATGCTGGCTGAGTTGTAGATGCAATGCAGCAA
CGGCTAAAAAGGTCTATGGCTATTGAGGCATTTGAGCTGGCAAGCAGCAA
TTCAGGCCTTGGATTTTTTAAGACTGCCCTCAGTCTACGCTATGTTGCTC
TGTTCCCAATTGCACCCGTCCCAATCGGCGGACGGTTACTTTCCCGGCGC
CCGCTTACGGCTGGCGTCCCGACACCGCCCCCCAATACTCTATCTGCCCG
CTGCGCATCGTCACAGCAAGTGGTTCTCGCGGGCGCAACGAGTCGCATAC
CTGATGGCGGCGCTGCTTTCGCTCATGGCGGCGGATGCCACCGTCTTCAG
CGTAATGTACCAAGACATCGGTCCTTGCAGCAGCTATACCACGAGGTGCG
CCCGCCTGCTGTACTTTACCTTCTGCCGGTTCCTTTCTTCCATCGTTTGC
TTCGGAAAGAAGGGTGCTATTTCGCCATCTGGACTCCTTGTGAATCCTTG
ACCGTTCAAGGGCCATAACATCGTAACAATAGGCAGTGACGTCTTCCGCA
TCTTCTGCAGAAGACAGCGGCTGCTGGCGCGCTTGTATTTGTTTATTCTG
CCACGGCAAACGCTGGTCAAGTGTTCTTCTCTGCCTCTCCTCGCAGATCG
ACGTGCCTCGAGAAGATGAAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13916:3..1323+

>mRNA_P-wetherbeei_contig13916.1.1 ID=mRNA_P-wetherbeei_contig13916.1.1|Name=mRNA_P-wetherbeei_contig13916.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=504bp|location=Sequence derived from alignment at P-wetherbeei_contig13916:3..1323+ (Phaeothamnion wetherbeei SAG_119_79)
AACCCAATCCCAACAGGTGGGGCGGGCTCCCTCGCCTTCCAGCCGCCGAA
AAAGGAACCCCGCTGGTGGGAGCCGGCCCGCGACACAGCCCTACCGCAGC
AGACGCGGCCGCGGCTGTCGTCGTCGCCGTCGCCGACGGCATCTCCCGAA
GGCGACGAGGGCGTCGTCTTCAACCGGCTGGCGCTGTTGAAGCGCATGCG
GAAACGGCAGGAAACGCTCAAGCAGTTCATTAACGGCCATCGCGGTCAGG
TCGGGGCGCCGCACAACTTCGGATCCGCGCGCTGGGGGAGCCGTATGCTG
CTTCTCTTGAAGAGCCGCCACGATATCTTGAGTGTCTTCTTCTACTTCAG
CAAGTGGTTCTCGCGGGCGCAACGAGTCGCATACCTGATGGCGGCGCTGC
TTTCGCTCATGGCGGCGGATGCCACCGTCTTCAGCGTAATGTACCAAGAC
ATCGGTCCTTGCAGCAGCTATACCACGAGATCGACGTGCCTCGAGAAGAT
GAAC
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