mRNA_P-wetherbeei_contig13915.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13915.1.1
Unique NamemRNA_P-wetherbeei_contig13915.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig13915.1.1 vs. uniprot
Match: A0A1I8HIL9_9PLAT (ANK_REP_REGION domain-containing protein n=1 Tax=Macrostomum lignano TaxID=282301 RepID=A0A1I8HIL9_9PLAT)

HSP 1 Score: 48.9 bits (115), Expect = 4.960e-5
Identity = 24/44 (54.55%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:   10 GADVAATDIRRETPLHYATRFRRASAANLLIRAGADPDARSAWG 141
            GAD+  T  R+ETPLH+A RF++ +AA  LIRAGAD + R++ G
Sbjct:  217 GADLNRTSSRKETPLHFALRFKKVAAAERLIRAGADLETRASIG 260
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BLAST of mRNA_P-wetherbeei_contig13915.1.1 vs. uniprot
Match: A0A1I8G7H1_9PLAT (ANK_REP_REGION domain-containing protein n=1 Tax=Macrostomum lignano TaxID=282301 RepID=A0A1I8G7H1_9PLAT)

HSP 1 Score: 48.9 bits (115), Expect = 5.000e-5
Identity = 24/44 (54.55%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:   10 GADVAATDIRRETPLHYATRFRRASAANLLIRAGADPDARSAWG 141
            GAD+  T  R+ETPLH+A RF++ +AA  LIRAGAD + R++ G
Sbjct:  562 GADLNRTSSRKETPLHFALRFKKVAAAERLIRAGADLETRASIG 605
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BLAST of mRNA_P-wetherbeei_contig13915.1.1 vs. uniprot
Match: A0A267ELS2_9PLAT (Uncharacterized protein n=3 Tax=Macrostomum lignano TaxID=282301 RepID=A0A267ELS2_9PLAT)

HSP 1 Score: 48.9 bits (115), Expect = 5.040e-5
Identity = 24/44 (54.55%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:   10 GADVAATDIRRETPLHYATRFRRASAANLLIRAGADPDARSAWG 141
            GAD+  T  R+ETPLH+A RF++ +AA  LIRAGAD + R++ G
Sbjct:  696 GADLNRTSSRKETPLHFALRFKKVAAAERLIRAGADLETRASIG 739
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13915.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A1I8HIL9_9PLAT4.960e-554.55ANK_REP_REGION domain-containing protein n=1 Tax=M... [more]
A0A1I8G7H1_9PLAT5.000e-554.55ANK_REP_REGION domain-containing protein n=1 Tax=M... [more]
A0A267ELS2_9PLAT5.040e-554.55Uncharacterized protein n=3 Tax=Macrostomum lignan... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13915contigP-wetherbeei_contig13915:2..196 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog7165.AGAP004499-PA
PFAMsAnk,Ank_2,Ank_3,Ank_4
Model size195
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004842,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0032446,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0070647,GO:0071704,GO:0140096,GO:1901564
Exons1
Evalue3.92e-05
EggNOG OGsCOG0666@1|root,KOG0508@2759|Eukaryota,39U97@33154|Opisthokonta,3BMDU@33208|Metazoa,3D4D7@33213|Bilateria,41THW@6656|Arthropoda,3SH45@50557|Insecta,4509Q@7147|Diptera,45GS5@7148|Nematocera
DescriptionAnkyrin repeat
Cds size195
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186001.7014406-CDS-P-wetherbeei_contig13915:1..1961683186001.7014406-CDS-P-wetherbeei_contig13915:1..196Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13915 2..196 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13915.1.1prot_P-wetherbeei_contig13915.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13915 2..196 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13915.1.1

>prot_P-wetherbeei_contig13915.1.1 ID=prot_P-wetherbeei_contig13915.1.1|Name=mRNA_P-wetherbeei_contig13915.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=65bp
LGCGADVAATDIRRETPLHYATRFRRASAANLLIRAGADPDARSAWGELA
GTLAKAYKIFPTSDD
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mRNA from alignment at P-wetherbeei_contig13915:2..196+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13915.1.1 ID=mRNA_P-wetherbeei_contig13915.1.1|Name=mRNA_P-wetherbeei_contig13915.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=195bp|location=Sequence derived from alignment at P-wetherbeei_contig13915:2..196+ (Phaeothamnion wetherbeei SAG_119_79)
CTCGGCTGCGGCGCCGATGTGGCCGCGACCGACATTCGCCGCGAGACGCC
ATTGCATTACGCGACGCGTTTTCGGCGGGCGAGCGCGGCAAATCTTCTAA
TTCGTGCCGGAGCCGATCCGGACGCCCGCAGCGCGTGGGGCGAGCTGGCC
GGCACCCTCGCGAAGGCGTACAAGATCTTTCCGACTAGCGACGAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13915:2..196+

>mRNA_P-wetherbeei_contig13915.1.1 ID=mRNA_P-wetherbeei_contig13915.1.1|Name=mRNA_P-wetherbeei_contig13915.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=195bp|location=Sequence derived from alignment at P-wetherbeei_contig13915:2..196+ (Phaeothamnion wetherbeei SAG_119_79)
CTCGGCTGCGGCGCCGATGTGGCCGCGACCGACATTCGCCGCGAGACGCC
ATTGCATTACGCGACGCGTTTTCGGCGGGCGAGCGCGGCAAATCTTCTAA
TTCGTGCCGGAGCCGATCCGGACGCCCGCAGCGCGTGGGGCGAGCTGGCC
GGCACCCTCGCGAAGGCGTACAAGATCTTTCCGACTAGCGACGAC
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