mRNA_P-wetherbeei_contig13913.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13913.1.1
Unique NamemRNA_P-wetherbeei_contig13913.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13913.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13913contigP-wetherbeei_contig13913:59..1616 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1292
Hectar predicted targeting categoryother localisation
Exons2
Cds size1290
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186001.6599276-CDS-P-wetherbeei_contig13913:58..7791683186001.6599276-CDS-P-wetherbeei_contig13913:58..779Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13913 59..779 +
1683186001.669165-CDS-P-wetherbeei_contig13913:1046..16151683186001.669165-CDS-P-wetherbeei_contig13913:1046..1615Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13913 1047..1615 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13913.1.1prot_P-wetherbeei_contig13913.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13913 59..1615 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13913.1.1

>prot_P-wetherbeei_contig13913.1.1 ID=prot_P-wetherbeei_contig13913.1.1|Name=mRNA_P-wetherbeei_contig13913.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=430bp
RLWRIVGNAAAPTGGRVVQPLKFMDDGELAFDPAEFMALAYEEDRLRRRR
RHHARCRRRRRRQQQQEERHKESVLYGQDFSAGYGSGGGYGSGGGGYNDD
GDHGDGGSDGAFVANSSRSSTASSQLEDDDYYNGDSGGGSGGGTRHGFGR
GGAGSGTGAAGGSGGLRLPAWLERLVGPSRPPSDMAHLFGTAPFDPETFA
PVAVLSEPGGWPALMADVFVALFPPEKPAEGSEVQKQEAALAHRKKILER
LSAGSGAANRGNSPLRGSLGGRGAGADNDGGIGGGNNGGGSPPQGSHSHT
VAEHAAAAAVGCRGILLGLDADNSVSSAGRSFAAAAAGGGGGGSRYHLPP
KSLPFGTDVADICPADGFVYYEFELFRGEGAVVTLAAGAAADPDLFVSRG
GAPPTLLRHDWASTSFEAVDRVRIEPHHPR
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mRNA from alignment at P-wetherbeei_contig13913:59..1616+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13913.1.1 ID=mRNA_P-wetherbeei_contig13913.1.1|Name=mRNA_P-wetherbeei_contig13913.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1558bp|location=Sequence derived from alignment at P-wetherbeei_contig13913:59..1616+ (Phaeothamnion wetherbeei SAG_119_79)
CGGCTGTGGCGCATCGTCGGCAATGCGGCGGCGCCCACCGGTGGCCGCGT
CGTGCAGCCGCTGAAGTTCATGGATGACGGCGAGCTGGCGTTCGATCCCG
CGGAGTTTATGGCGCTTGCGTACGAGGAGGACCGCCTCCGCCGCCGCCGC
CGCCACCACGCACGTTGCCGCCGCCGCCGCCGACGGCAACAGCAACAGGA
AGAACGACATAAAGAGAGCGTTCTGTATGGCCAAGACTTCAGTGCTGGGT
ACGGCAGTGGTGGTGGCTACGGCAGCGGCGGCGGTGGTTACAATGACGAC
GGAGATCATGGCGACGGCGGCAGCGACGGAGCTTTCGTGGCCAATTCGTC
TCGCTCGAGCACCGCATCCAGCCAGCTGGAGGACGACGACTACTACAACG
GCGACAGCGGCGGCGGTAGCGGCGGCGGCACTCGGCATGGCTTCGGCCGG
GGCGGCGCCGGAAGCGGCACTGGCGCTGCCGGCGGCAGCGGGGGCTTGCG
GCTTCCAGCATGGCTGGAGCGGCTGGTGGGGCCGTCCCGCCCCCCAAGCG
ACATGGCGCACCTGTTCGGCACCGCGCCGTTCGACCCCGAGACGTTTGCA
CCGGTTGCCGTCCTGAGCGAGCCCGGCGGGTGGCCGGCGCTTATGGCGGA
CGTCTTCGTGGCGCTCTTCCCGCCGGAGAAACCGGCGGAGGGCAGCGAGG
TACAAAAGCAGGAGGCCGCATGTGAGCAAAAGAGGGAAATCTTTTTTGGA
GGTATTCAGGAGGCGTTTGGGCATGTCTTGGTTCCGGTTGCTTTATTGCC
TGGTTTCCGTGCCTCCCAAAGTGTGCGATTGAGTTCTGCCCAGCAATTGT
CGATGCTGCCTGGGGGCCTTGAAATACACGGCAATAGTGTTCCCGCTTTG
CATGCCTGCTGGTCGATGGTCATTCCGCAGTGCTGACTAGATAATCTTCT
TGCTGCCGCCTCGCTTGCAAACTCCCCGGCGGTCGCAGTGGCGCATCGCA
AGAAGATTCTCGAGCGCCTCTCCGCTGGCTCTGGGGCCGCCAACCGCGGC
AACAGCCCGCTCCGCGGCAGCCTTGGCGGCCGCGGTGCGGGCGCCGACAA
CGACGGCGGCATCGGCGGGGGCAACAACGGCGGTGGCAGCCCGCCACAAG
GTAGCCACAGCCATACCGTGGCTGAGCATGCTGCCGCCGCAGCAGTGGGC
TGCCGCGGAATCCTTCTTGGCCTCGATGCCGACAATTCGGTGAGCTCTGC
CGGCAGGAGCTTCGCCGCTGCCGCCGCCGGCGGCGGCGGCGGCGGAAGCC
GTTACCACCTGCCGCCGAAATCGCTGCCGTTTGGCACCGACGTCGCCGAC
ATCTGTCCGGCCGACGGCTTCGTCTACTACGAGTTCGAGCTCTTCCGTGG
GGAAGGCGCCGTCGTAACGCTGGCGGCTGGGGCGGCGGCGGACCCGGACC
TGTTTGTGAGCCGCGGCGGCGCGCCGCCGACACTGCTGCGGCACGACTGG
GCGAGCACGTCCTTCGAGGCGGTGGACCGCGTGCGCATCGAGCCGCACCA
CCCGCGGT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13913:59..1616+

>mRNA_P-wetherbeei_contig13913.1.1 ID=mRNA_P-wetherbeei_contig13913.1.1|Name=mRNA_P-wetherbeei_contig13913.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1290bp|location=Sequence derived from alignment at P-wetherbeei_contig13913:59..1616+ (Phaeothamnion wetherbeei SAG_119_79)
CGGCTGTGGCGCATCGTCGGCAATGCGGCGGCGCCCACCGGTGGCCGCGT
CGTGCAGCCGCTGAAGTTCATGGATGACGGCGAGCTGGCGTTCGATCCCG
CGGAGTTTATGGCGCTTGCGTACGAGGAGGACCGCCTCCGCCGCCGCCGC
CGCCACCACGCACGTTGCCGCCGCCGCCGCCGACGGCAACAGCAACAGGA
AGAACGACATAAAGAGAGCGTTCTGTATGGCCAAGACTTCAGTGCTGGGT
ACGGCAGTGGTGGTGGCTACGGCAGCGGCGGCGGTGGTTACAATGACGAC
GGAGATCATGGCGACGGCGGCAGCGACGGAGCTTTCGTGGCCAATTCGTC
TCGCTCGAGCACCGCATCCAGCCAGCTGGAGGACGACGACTACTACAACG
GCGACAGCGGCGGCGGTAGCGGCGGCGGCACTCGGCATGGCTTCGGCCGG
GGCGGCGCCGGAAGCGGCACTGGCGCTGCCGGCGGCAGCGGGGGCTTGCG
GCTTCCAGCATGGCTGGAGCGGCTGGTGGGGCCGTCCCGCCCCCCAAGCG
ACATGGCGCACCTGTTCGGCACCGCGCCGTTCGACCCCGAGACGTTTGCA
CCGGTTGCCGTCCTGAGCGAGCCCGGCGGGTGGCCGGCGCTTATGGCGGA
CGTCTTCGTGGCGCTCTTCCCGCCGGAGAAACCGGCGGAGGGCAGCGAGG
TACAAAAGCAGGAGGCCGCATTGGCGCATCGCAAGAAGATTCTCGAGCGC
CTCTCCGCTGGCTCTGGGGCCGCCAACCGCGGCAACAGCCCGCTCCGCGG
CAGCCTTGGCGGCCGCGGTGCGGGCGCCGACAACGACGGCGGCATCGGCG
GGGGCAACAACGGCGGTGGCAGCCCGCCACAAGGTAGCCACAGCCATACC
GTGGCTGAGCATGCTGCCGCCGCAGCAGTGGGCTGCCGCGGAATCCTTCT
TGGCCTCGATGCCGACAATTCGGTGAGCTCTGCCGGCAGGAGCTTCGCCG
CTGCCGCCGCCGGCGGCGGCGGCGGCGGAAGCCGTTACCACCTGCCGCCG
AAATCGCTGCCGTTTGGCACCGACGTCGCCGACATCTGTCCGGCCGACGG
CTTCGTCTACTACGAGTTCGAGCTCTTCCGTGGGGAAGGCGCCGTCGTAA
CGCTGGCGGCTGGGGCGGCGGCGGACCCGGACCTGTTTGTGAGCCGCGGC
GGCGCGCCGCCGACACTGCTGCGGCACGACTGGGCGAGCACGTCCTTCGA
GGCGGTGGACCGCGTGCGCATCGAGCCGCACCACCCGCGG
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