mRNA_P-wetherbeei_contig13912.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13912.2.1
Unique NamemRNA_P-wetherbeei_contig13912.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig13912.2.1 vs. uniprot
Match: A0A835YWD3_9STRA (Serine hydroxymethyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWD3_9STRA)

HSP 1 Score: 135 bits (339), Expect = 1.740e-35
Identity = 68/92 (73.91%), Postives = 79/92 (85.87%), Query Frame = 1 
Query:    1 LTPGGIRMGAPALTTRGFTEEDFVQVAKFFDRAVTIAQAVKKETGPKIKDFRAKLAAGADAVPELALLKTEVVAFSRQFPAIGFDENAMRYP 276
            L PGGIRMGAPALTTRGFTEEDFV+VA+FFDR V I+  +K++TG K+KD++A LA+GADA PELA LK +VVAFSR FPAIGFDE  MRYP
Sbjct:  408 LMPGGIRMGAPALTTRGFTEEDFVKVAEFFDRGVKISMDIKEKTG-KLKDYKAFLASGADAHPELAKLKADVVAFSRGFPAIGFDETTMRYP 498
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BLAST of mRNA_P-wetherbeei_contig13912.2.1 vs. uniprot
Match: A0A7S2C4R3_9STRA (Serine hydroxymethyltransferase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C4R3_9STRA)

HSP 1 Score: 125 bits (313), Expect = 5.140e-32
Identity = 58/92 (63.04%), Postives = 74/92 (80.43%), Query Frame = 1 
Query:    1 LTPGGIRMGAPALTTRGFTEEDFVQVAKFFDRAVTIAQAVKKETGPKIKDFRAKLAAGADAVPELALLKTEVVAFSRQFPAIGFDENAMRYP 276
            +TP GIRMG PALTTRGFTE DF +VA+FFDR VTI+Q +K+ TG K+KDF+A LA GA  VPE+  L+ +V AF+R FP IGFDE++M++P
Sbjct:  353 MTPSGIRMGTPALTTRGFTEADFDKVAEFFDRGVTISQMLKESTGKKLKDFKAALAPGAAPVPEIEALRADVAAFARTFPTIGFDESSMKFP 444
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BLAST of mRNA_P-wetherbeei_contig13912.2.1 vs. uniprot
Match: A0A7S2WJP7_9STRA (Serine hydroxymethyltransferase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WJP7_9STRA)

HSP 1 Score: 124 bits (312), Expect = 1.230e-31
Identity = 59/92 (64.13%), Postives = 74/92 (80.43%), Query Frame = 1 
Query:    1 LTPGGIRMGAPALTTRGFTEEDFVQVAKFFDRAVTIAQAVKKETGPKIKDFRAKLAAGADAVPELALLKTEVVAFSRQFPAIGFDENAMRYP 276
            +TPGGIRMGAPALT+RG  E DF +VA+FFDR V+IA  VK+ TG K+KDFRA L  GA AVPEL  L+ +V+ FS+QFP +GFDE++MR+P
Sbjct:  400 MTPGGIRMGAPALTSRGLGEADFERVAEFFDRGVSIALQVKESTGKKLKDFRAALQPGASAVPELEALRQDVIDFSQQFPTVGFDESSMRFP 491
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BLAST of mRNA_P-wetherbeei_contig13912.2.1 vs. uniprot
Match: A0A7S3Y4I0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y4I0_HETAK)

HSP 1 Score: 112 bits (279), Expect = 3.050e-29
Identity = 56/93 (60.22%), Postives = 70/93 (75.27%), Query Frame = 1 
Query:    1 LTPGGIRMGAPALTTRGFTEEDFVQVAKFFDRAVTIAQAVKKET-GPKIKDFRAKLAAGADAVPELALLKTEVVAFSRQFPAIGFDENAMRYP 276
            L P GIRMGAP LTTRG TE+DF QVA FFD AV + + +K++  G K+KDF+  LAAG DA P +A L+  V+AF+R FP IGF+E+AMRYP
Sbjct:   87 LVPSGIRMGAPTLTTRGLTEQDFEQVAVFFDEAVRVTKDIKEKLPGKKLKDFKDYLAAGPDADPAVADLRKRVIAFARGFPCIGFEESAMRYP 179
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BLAST of mRNA_P-wetherbeei_contig13912.2.1 vs. uniprot
Match: A0A7S2YX07_9CHLO (Serine hydroxymethyltransferase n=3 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A7S2YX07_9CHLO)

HSP 1 Score: 114 bits (286), Expect = 7.130e-28
Identity = 55/93 (59.14%), Postives = 70/93 (75.27%), Query Frame = 1 
Query:    1 LTPGGIRMGAPALTTRGFTEEDFVQVAKFFDRAVTIAQAVKKETGPKIKDFRAKLAAGADAVPELALLKTEVVAFSRQFPAIGFDENAMRYPA 279
            L PGG+RMG PALTTRGF EEDFV+VA F DR+V IAQ +K++TGPK+KDF+A L  G    P++A L+ +V  F+ QFP IGFD+  M+Y A
Sbjct:  433 LVPGGVRMGTPALTTRGFVEEDFVKVADFVDRSVKIAQKLKEQTGPKLKDFKALLEDGNPLPPDVAELRADVEEFAMQFPTIGFDKADMKYKA 525
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BLAST of mRNA_P-wetherbeei_contig13912.2.1 vs. uniprot
Match: A0A7J7PQ96_9CHLO (Serine hydroxymethyltransferase n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7PQ96_9CHLO)

HSP 1 Score: 112 bits (281), Expect = 1.140e-27
Identity = 54/91 (59.34%), Postives = 74/91 (81.32%), Query Frame = 1 
Query:    1 LTPGGIRMGAPALTTRGFTEEDFVQVAKFFDRAVTIAQAVKKETGPKIKDFRAKLAAGADAVPELALLKTEVVAFSRQFPAIGFDENAMRY 273
            + PGG+RMG+PALT+RGF E+DF +VA+F DRAVTIA  +KK+TGPK+KDFR  +   A++VPE+  L+ +V AF++QFP IGF++ AMRY
Sbjct:  307 MVPGGLRMGSPALTSRGFVEKDFDKVAEFVDRAVTIAVDLKKKTGPKLKDFRDYV--NANSVPEIEALREDVEAFAKQFPTIGFEKAAMRY 395
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BLAST of mRNA_P-wetherbeei_contig13912.2.1 vs. uniprot
Match: D8LUA3_ECTSI (Serine hydroxymethyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LUA3_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 2.880e-27
Identity = 57/93 (61.29%), Postives = 68/93 (73.12%), Query Frame = 1 
Query:    1 LTPGGIRMGAPALTTRGFTEEDFVQVAKFFDRAVTIAQAVKKETGPKIKDFRAKLAAGADAVPELALLKTEVVAFSRQFPAIGFDENAMRYPA 279
            LTPGGIRMGAPALT+RGFTEEDF QVA FF R VT+A+ V  +TG KIK +R  LA G    PE+  L+ ++  F+R FP IGFD+  MRYPA
Sbjct:  399 LTPGGIRMGAPALTSRGFTEEDFEQVAAFFHRGVTLAKKVAADTG-KIKAYREALADGGSKYPEIKQLRDDINNFARTFPVIGFDQETMRYPA 490
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BLAST of mRNA_P-wetherbeei_contig13912.2.1 vs. uniprot
Match: A0A7S2FD08_9STRA (Glycine hydroxymethyltransferase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FD08_9STRA)

HSP 1 Score: 108 bits (271), Expect = 2.920e-27
Identity = 55/91 (60.44%), Postives = 69/91 (75.82%), Query Frame = 1 
Query:    1 LTPGGIRMGAPALTTRGFTEEDFVQVAKFFDRAVTIAQAVKKETGPKIKDFRAKLAAGADAVPELALLKTEVVAFSRQFPAIGFDENAMRY 273
            +TPGGIRMGAPALT+RG  E+DFV+VAKFFDR V IA  VK  TG K+KDF+A L +  +A  EL  L+ EV  FS+QF  +GF+E++MRY
Sbjct:  159 MTPGGIRMGAPALTSRGLVEKDFVEVAKFFDRGVNIALEVKGATGKKLKDFKAALPSS-EANAELKALENEVAHFSQQFMTVGFEEDSMRY 248
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BLAST of mRNA_P-wetherbeei_contig13912.2.1 vs. uniprot
Match: A0A2K1JHU1_PHYPA (Serine hydroxymethyltransferase n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1JHU1_PHYPA)

HSP 1 Score: 112 bits (279), Expect = 6.730e-27
Identity = 54/91 (59.34%), Postives = 69/91 (75.82%), Query Frame = 1 
Query:    1 LTPGGIRMGAPALTTRGFTEEDFVQVAKFFDRAVTIAQAVKKETGPKIKDFRAKLAAGADAVPELALLKTEVVAFSRQFPAIGFDENAMRY 273
            L PGGIRMG PALT+RGF EEDF +VA+FFDRAV IA  VKK TG K+KDFRA +    +   E+  L+TEV  F++QFP IGF++++M+Y
Sbjct:  432 LVPGGIRMGTPALTSRGFIEEDFEKVAEFFDRAVGIAVKVKKSTGAKLKDFRAAVDTDPEIQAEIGKLRTEVEEFAKQFPTIGFEKSSMKY 522
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BLAST of mRNA_P-wetherbeei_contig13912.2.1 vs. uniprot
Match: A0A7S3M9R5_9STRA (Serine hydroxymethyltransferase n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M9R5_9STRA)

HSP 1 Score: 111 bits (278), Expect = 7.350e-27
Identity = 54/84 (64.29%), Postives = 64/84 (76.19%), Query Frame = 1 
Query:    1 LTPGGIRMGAPALTTRGFTEEDFVQVAKFFDRAVTIAQAVKKETGPKIKDFRAKLAAGADAVPELALLKTEVVAFSRQFPAIGF 252
            +TPGGIRMG PALT+RG TEEDF +VA FFDRAVTI + +  +TGPKIKDF+A LA GA+  PEL  L  EV  F+R FP +GF
Sbjct:  403 MTPGGIRMGTPALTSRGLTEEDFEKVAHFFDRAVTITENINAKTGPKIKDFKAALANGAEGFPELQKLAEEVREFARSFPTVGF 486
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13912.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YWD3_9STRA1.740e-3573.91Serine hydroxymethyltransferase n=1 Tax=Tribonema ... [more]
A0A7S2C4R3_9STRA5.140e-3263.04Serine hydroxymethyltransferase n=1 Tax=Florenciel... [more]
A0A7S2WJP7_9STRA1.230e-3164.13Serine hydroxymethyltransferase n=1 Tax=Rhizochrom... [more]
A0A7S3Y4I0_HETAK3.050e-2960.22Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2YX07_9CHLO7.130e-2859.14Serine hydroxymethyltransferase n=3 Tax=Pycnococcu... [more]
A0A7J7PQ96_9CHLO1.140e-2759.34Serine hydroxymethyltransferase n=1 Tax=Scenedesmu... [more]
D8LUA3_ECTSI2.880e-2761.29Serine hydroxymethyltransferase n=2 Tax=Ectocarpus... [more]
A0A7S2FD08_9STRA2.920e-2760.44Glycine hydroxymethyltransferase n=1 Tax=Dictyocha... [more]
A0A2K1JHU1_PHYPA6.730e-2759.34Serine hydroxymethyltransferase n=2 Tax=Physcomitr... [more]
A0A7S3M9R5_9STRA7.350e-2764.29Serine hydroxymethyltransferase n=1 Tax=Spumella e... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13912contigP-wetherbeei_contig13912:931..1558 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog3218.PP1S79_54V6.1
PFAMsSHMT
Model size285
Max annot lvl33090|Viridiplantae
KEGG rclassRC00022,RC00112,RC01583,RC02958
KEGG koko:K00600
KEGG ReactionR00945,R09099
KEGG Pathwayko00260,ko00460,ko00630,ko00670,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko01523,map00260,map00460,map00630,map00670,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map01523
KEGG ModuleM00140,M00141,M00346,M00532
Hectar predicted targeting categoryother localisation
GOsGO:0001505,GO:0002376,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0003824,GO:0004372,GO:0005488,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005747,GO:0005759,GO:0005829,GO:0005840,GO:0005886,GO:0006082,GO:0006520,GO:0006544,GO:0006563,GO:0006807,GO:0006950,GO:0006952,GO:0006955,GO:0007623,GO:0008150,GO:0008152,GO:0008187,GO:0008219,GO:0008266,GO:0008270,GO:0009069,GO:0009266,GO:0009314,GO:0009409,GO:0009416,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009536,GO:0009570,GO:0009579,GO:0009626,GO:0009628,GO:0009853,GO:0009987,GO:0010035,GO:0010038,GO:0010319,GO:0012501,GO:0016020,GO:0016740,GO:0016741,GO:0016742,GO:0017144,GO:0019752,GO:0019866,GO:0022626,GO:0030964,GO:0031090,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0031976,GO:0031984,GO:0032991,GO:0033554,GO:0034050,GO:0042133,GO:0042221,GO:0043094,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044434,GO:0044435,GO:0044444,GO:0044445,GO:0044446,GO:0044455,GO:0044464,GO:0045087,GO:0045271,GO:0046686,GO:0046872,GO:0046914,GO:0048046,GO:0048511,GO:0050896,GO:0050897,GO:0051716,GO:0065007,GO:0065008,GO:0070013,GO:0070469,GO:0071704,GO:0071944,GO:0097159,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1901363,GO:1901564,GO:1901605,GO:1902494,GO:1990204,GO:1990904
Exons2
Evalue3.1e-23
EggNOG OGsCOG0112@1|root,KOG2467@2759|Eukaryota,37K7X@33090|Viridiplantae,3GCUC@35493|Streptophyta
EC2.1.2.1
DescriptionInterconversion of serine and glycine
Cds size264
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186001.5924075-UTR-P-wetherbeei_contig13912:930..9511683186001.5924075-UTR-P-wetherbeei_contig13912:930..951Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig13912 931..951 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186001.6101623-CDS-P-wetherbeei_contig13912:951..9881683186001.6101623-CDS-P-wetherbeei_contig13912:951..988Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13912 952..988 +
1683186001.6289542-CDS-P-wetherbeei_contig13912:1331..15581683186001.6289542-CDS-P-wetherbeei_contig13912:1331..1558Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13912 1332..1558 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13912.2.1prot_P-wetherbeei_contig13912.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13912 952..1558 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13912.2.1

>prot_P-wetherbeei_contig13912.2.1 ID=prot_P-wetherbeei_contig13912.2.1|Name=mRNA_P-wetherbeei_contig13912.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=88bp
MGAPALTTRGFTEEDFVQVAKFFDRAVTIAQAVKKETGPKIKDFRAKLAA
GADAVPELALLKTEVVAFSRQFPAIGFDENAMRYPAK*
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mRNA from alignment at P-wetherbeei_contig13912:931..1558+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13912.2.1 ID=mRNA_P-wetherbeei_contig13912.2.1|Name=mRNA_P-wetherbeei_contig13912.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=628bp|location=Sequence derived from alignment at P-wetherbeei_contig13912:931..1558+ (Phaeothamnion wetherbeei SAG_119_79)
CTGACGCCCGGCGGAATCCGGATGGGCGCGCCGGCGCTGACGACGCGCGG
CTTCACTGGTGAGTCGGCTGTGGATGGCGTCGAGGCGGTGCCGGAATGGT
AGTTTGAAGGAGATGGAGGGCTAGGTAGTTCGTATGACAGAGATGACGGC
ACGGACCGCAAGGGAAGGAGGTGACCGATGCGCAGGGTTTTTCGGGTGAA
TGCAGCTTTGTTTTTCATGTTTCCACGCAGACATTCCGTGCTCCTTGCCT
TTCTCTGGCGCCCTTCTCAGGCGTAGGAGCGATAGTATTTCACACGATCT
CAAACCCCCAGTTGCTAGTATCCCACTCTCAAGGACCGTTCTTCTACCCC
TCCCAAAAACACCGCGTCGTTCCCTCGGGGGCCAAACAACAAACACAACA
GAGGAGGACTTCGTACAGGTGGCCAAGTTCTTCGATCGCGCCGTGACCAT
CGCCCAGGCTGTTAAGAAGGAGACGGGCCCCAAGATCAAGGACTTCCGGG
CCAAGCTGGCGGCCGGCGCCGACGCCGTGCCCGAGCTGGCGCTCCTCAAG
ACGGAGGTTGTGGCCTTCAGCCGGCAGTTCCCGGCCATCGGCTTCGACGA
GAACGCCATGCGGTACCCGGCGAAGTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13912:931..1558+

>mRNA_P-wetherbeei_contig13912.2.1 ID=mRNA_P-wetherbeei_contig13912.2.1|Name=mRNA_P-wetherbeei_contig13912.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=264bp|location=Sequence derived from alignment at P-wetherbeei_contig13912:931..1558+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGGCGCGCCGGCGCTGACGACGCGCGGCTTCACTGAGGAGGACTTCGT
ACAGGTGGCCAAGTTCTTCGATCGCGCCGTGACCATCGCCCAGGCTGTTA
AGAAGGAGACGGGCCCCAAGATCAAGGACTTCCGGGCCAAGCTGGCGGCC
GGCGCCGACGCCGTGCCCGAGCTGGCGCTCCTCAAGACGGAGGTTGTGGC
CTTCAGCCGGCAGTTCCCGGCCATCGGCTTCGACGAGAACGCCATGCGGT
ACCCGGCGAAGTAA
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