mRNA_P-wetherbeei_contig13912.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13912.1.1
Unique NamemRNA_P-wetherbeei_contig13912.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig13912.1.1 vs. uniprot
Match: A0A7S4SU87_9DINO (Serine hydroxymethyltransferase (Fragment) n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4SU87_9DINO)

HSP 1 Score: 60.1 bits (144), Expect = 4.330e-8
Identity = 28/43 (65.12%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:    1 RGPRGAMIFYRKGQRSVNKKGQPVMYDIEVRYTSPFLSILSPG 129
            RGPRGAMIFYRKGQRSV+KKG P+MYD+E R  +     L  G
Sbjct:  277 RGPRGAMIFYRKGQRSVDKKGNPIMYDLEERINAAVFPGLQGG 319
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BLAST of mRNA_P-wetherbeei_contig13912.1.1 vs. uniprot
Match: A0A0G4EQQ0_VITBC (Serine hydroxymethyltransferase n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EQQ0_VITBC)

HSP 1 Score: 60.1 bits (144), Expect = 4.820e-8
Identity = 26/29 (89.66%), Postives = 28/29 (96.55%), Query Frame = 1 
Query:    1 RGPRGAMIFYRKGQRSVNKKGQPVMYDIE 87
            RGPRGAMIFYRKGQ+ VNKKGQP+MYDIE
Sbjct:  276 RGPRGAMIFYRKGQKGVNKKGQPIMYDIE 304
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BLAST of mRNA_P-wetherbeei_contig13912.1.1 vs. uniprot
Match: A0A7S2C4R3_9STRA (Serine hydroxymethyltransferase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C4R3_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 6.260e-8
Identity = 27/29 (93.10%), Postives = 28/29 (96.55%), Query Frame = 3 
Query:  285 QDKINFAVFPGLQGGPHNHTIAALAAALK 371
            +DKINFAVFPGLQGGPHNHTIAALA ALK
Sbjct:  245 EDKINFAVFPGLQGGPHNHTIAALATALK 273
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BLAST of mRNA_P-wetherbeei_contig13912.1.1 vs. uniprot
Match: A0A835YWD3_9STRA (Serine hydroxymethyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWD3_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 6.380e-8
Identity = 27/29 (93.10%), Postives = 28/29 (96.55%), Query Frame = 3 
Query:  285 QDKINFAVFPGLQGGPHNHTIAALAAALK 371
            +DKINFAVFPGLQGGPHNHTIAALA ALK
Sbjct:  300 EDKINFAVFPGLQGGPHNHTIAALATALK 328
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BLAST of mRNA_P-wetherbeei_contig13912.1.1 vs. uniprot
Match: W7TN09_9STRA (Serine hydroxymethyltransferase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TN09_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.180e-7
Identity = 27/33 (81.82%), Postives = 29/33 (87.88%), Query Frame = 3 
Query:  273 PSVAQDKINFAVFPGLQGGPHNHTIAALAAALK 371
            P   ++KINFAVFPGLQGGPHNHTIAALA ALK
Sbjct:  299 PYDLEEKINFAVFPGLQGGPHNHTIAALATALK 331
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BLAST of mRNA_P-wetherbeei_contig13912.1.1 vs. uniprot
Match: A0A7S4WGR8_9DINO (Serine hydroxymethyltransferase n=11 Tax=Alexandrium TaxID=2924 RepID=A0A7S4WGR8_9DINO)

HSP 1 Score: 58.9 bits (141), Expect = 1.220e-7
Identity = 27/43 (62.79%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:    1 RGPRGAMIFYRKGQRSVNKKGQPVMYDIEVRYTSPFLSILSPG 129
            RGPRGAMIFYRKGQRSV+KKG P+MYD+E +  +     L  G
Sbjct:  277 RGPRGAMIFYRKGQRSVDKKGNPIMYDLEEKINAAVFPGLQGG 319
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BLAST of mRNA_P-wetherbeei_contig13912.1.1 vs. uniprot
Match: A0A7S3KXM5_9STRA (Serine hydroxymethyltransferase n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3KXM5_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 1.690e-7
Identity = 32/75 (42.67%), Postives = 39/75 (52.00%), Query Frame = 1 
Query:    1 RGPRGAMIFYRKGQRSVNKKGQPVMYDIEVRYTSPFLSILSPGIVLLSFYAATGCRPKVKVPTFVVCHAESIPQA 225
            RGPRGAMIFYRKGQ+  +KKG PVMYD+E R        L  G    +  A   C  +   P FV    + +  A
Sbjct:  303 RGPRGAMIFYRKGQKGTDKKGNPVMYDLEDRINFAVFPGLQGGPHNHTIGALATCLKQAATPEFVEYQKQVLKNA 377
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BLAST of mRNA_P-wetherbeei_contig13912.1.1 vs. uniprot
Match: A0A7S0RYN9_9CHLO (Serine hydroxymethyltransferase n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0RYN9_9CHLO)

HSP 1 Score: 58.2 bits (139), Expect = 2.010e-7
Identity = 26/29 (89.66%), Postives = 27/29 (93.10%), Query Frame = 3 
Query:  285 QDKINFAVFPGLQGGPHNHTIAALAAALK 371
            +DKINFAVFPGLQGGPHNHTIA LA ALK
Sbjct:  154 EDKINFAVFPGLQGGPHNHTIAGLACALK 182
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BLAST of mRNA_P-wetherbeei_contig13912.1.1 vs. uniprot
Match: A0A7S2WJP7_9STRA (Serine hydroxymethyltransferase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WJP7_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 2.210e-7
Identity = 26/29 (89.66%), Postives = 27/29 (93.10%), Query Frame = 3 
Query:  285 QDKINFAVFPGLQGGPHNHTIAALAAALK 371
            +DKINFAVFPGLQGGPHNHTI ALA ALK
Sbjct:  292 EDKINFAVFPGLQGGPHNHTICALATALK 320
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BLAST of mRNA_P-wetherbeei_contig13912.1.1 vs. uniprot
Match: Q8W4V3_CHLRE (Serine hydroxymethyltransferase n=3 Tax=Chlamydomonas TaxID=3052 RepID=Q8W4V3_CHLRE)

HSP 1 Score: 58.2 bits (139), Expect = 2.220e-7
Identity = 26/29 (89.66%), Postives = 27/29 (93.10%), Query Frame = 3 
Query:  285 QDKINFAVFPGLQGGPHNHTIAALAAALK 371
            +DKINFAVFPGLQGGPHNHTIA LA ALK
Sbjct:  324 EDKINFAVFPGLQGGPHNHTIAGLACALK 352
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13912.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4SU87_9DINO4.330e-865.12Serine hydroxymethyltransferase (Fragment) n=1 Tax... [more]
A0A0G4EQQ0_VITBC4.820e-889.66Serine hydroxymethyltransferase n=1 Tax=Vitrella b... [more]
A0A7S2C4R3_9STRA6.260e-893.10Serine hydroxymethyltransferase n=1 Tax=Florenciel... [more]
A0A835YWD3_9STRA6.380e-893.10Serine hydroxymethyltransferase n=1 Tax=Tribonema ... [more]
W7TN09_9STRA1.180e-781.82Serine hydroxymethyltransferase n=3 Tax=Monodopsid... [more]
A0A7S4WGR8_9DINO1.220e-762.79Serine hydroxymethyltransferase n=11 Tax=Alexandri... [more]
A0A7S3KXM5_9STRA1.690e-742.67Serine hydroxymethyltransferase n=1 Tax=Amphora co... [more]
A0A7S0RYN9_9CHLO2.010e-789.66Serine hydroxymethyltransferase n=1 Tax=Chlamydomo... [more]
A0A7S2WJP7_9STRA2.210e-789.66Serine hydroxymethyltransferase n=1 Tax=Rhizochrom... [more]
Q8W4V3_CHLRE2.220e-789.66Serine hydroxymethyltransferase n=3 Tax=Chlamydomo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13912contigP-wetherbeei_contig13912:116..488 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog159749.K0TFW4
PFAMsSHMT
Model size373
Max annot lvl2836|Bacillariophyta
KEGG rclassRC00022,RC00112,RC01583,RC02958
KEGG koko:K00600
KEGG ReactionR00945,R09099
KEGG Pathwayko00260,ko00460,ko00630,ko00670,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko01523,map00260,map00460,map00630,map00670,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map01523
KEGG ModuleM00140,M00141,M00346,M00532
Hectar predicted targeting categoryother localisation
Exons1
Evalue0.000847
EggNOG OGsCOG0112@1|root,KOG2467@2759|Eukaryota,2XBJT@2836|Bacillariophyta
EC2.1.2.1
DescriptionInterconversion of serine and glycine
Cds size351
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186001.553992-UTR-P-wetherbeei_contig13912:115..1331683186001.553992-UTR-P-wetherbeei_contig13912:115..133Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig13912 116..133 +
1683186001.5700035-UTR-P-wetherbeei_contig13912:484..4881683186001.5700035-UTR-P-wetherbeei_contig13912:484..488Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig13912 485..488 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186001.5627956-CDS-P-wetherbeei_contig13912:133..4841683186001.5627956-CDS-P-wetherbeei_contig13912:133..484Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13912 134..484 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13912.1.1prot_P-wetherbeei_contig13912.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13912 134..484 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13912.1.1

>prot_P-wetherbeei_contig13912.1.1 ID=prot_P-wetherbeei_contig13912.1.1|Name=mRNA_P-wetherbeei_contig13912.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=117bp
MIFYRKGQRSVNKKGQPVMYDIEVRYTSPFLSILSPGIVLLSFYAATGCR
PKVKVPTFVVCHAESIPQALVCCLVSPNSIAVILLHRLRRTRSTLRCSRV
CRAGRTTTPSRRWRRR*
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mRNA from alignment at P-wetherbeei_contig13912:116..488+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13912.1.1 ID=mRNA_P-wetherbeei_contig13912.1.1|Name=mRNA_P-wetherbeei_contig13912.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=373bp|location=Sequence derived from alignment at P-wetherbeei_contig13912:116..488+ (Phaeothamnion wetherbeei SAG_119_79)
CGGGGGCCGCGCGGCGCCATGATCTTCTACCGCAAGGGCCAGCGGAGCGT
TAACAAGAAAGGCCAGCCGGTGATGTACGATATCGAGGTGAGATACACAA
GTCCTTTCCTCTCAATTCTCTCTCCTGGAATCGTGCTTCTTTCGTTTTAT
GCGGCGACTGGCTGTCGTCCGAAAGTGAAGGTTCCGACTTTTGTTGTTTG
TCATGCCGAGTCCATTCCACAGGCACTAGTTTGCTGTCTTGTCTCTCCCA
ACTCAATCGCTGTCATCCTGCTCCATCGGTTGCGCAGGACAAGATCAACT
TTGCGGTGTTCCCGGGTTTGCAGGGCGGGCCGCACAACCACACCATCGCG
GCGCTGGCGGCGGCGTTGAAGGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13912:116..488+

>mRNA_P-wetherbeei_contig13912.1.1 ID=mRNA_P-wetherbeei_contig13912.1.1|Name=mRNA_P-wetherbeei_contig13912.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=351bp|location=Sequence derived from alignment at P-wetherbeei_contig13912:116..488+ (Phaeothamnion wetherbeei SAG_119_79)
ATGATCTTCTACCGCAAGGGCCAGCGGAGCGTTAACAAGAAAGGCCAGCC
GGTGATGTACGATATCGAGGTGAGATACACAAGTCCTTTCCTCTCAATTC
TCTCTCCTGGAATCGTGCTTCTTTCGTTTTATGCGGCGACTGGCTGTCGT
CCGAAAGTGAAGGTTCCGACTTTTGTTGTTTGTCATGCCGAGTCCATTCC
ACAGGCACTAGTTTGCTGTCTTGTCTCTCCCAACTCAATCGCTGTCATCC
TGCTCCATCGGTTGCGCAGGACAAGATCAACTTTGCGGTGTTCCCGGGTT
TGCAGGGCGGGCCGCACAACCACACCATCGCGGCGCTGGCGGCGGCGTTG
A
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