mRNA_P-wetherbeei_contig13900.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig13900.1.1 vs. uniprot
Match: A0A1E4FSL6_9PROT (Transcriptional regulator CysB n=14 Tax=Nitrosomonadales TaxID=32003 RepID=A0A1E4FSL6_9PROT) HSP 1 Score: 340 bits (873), Expect = 4.390e-115 Identity = 168/233 (72.10%), Postives = 191/233 (81.97%), Query Frame = 1
Query: 1 RSLQEADNLKQAAQDFADEDSGKLTIATTHTQARYALPSVVQRFTQRYPKVKLGLVQGNPMQICQYTLAGQADFCIATEAIGTFEELVMLPCYAWNRCVITPPDHPLLKQKSLTLEAIAKYPIITYDFAFTGRSQINHAFETRGLTTNVVLTAIDSDVIKTYVALGLGIGILAHMAYDPARDTNLRALDASHLFESSTTRIGVPRNAYLRSYVYDFIEMFAPHLSRKVVDGAV 699
R L++A NLKQ Q+FA+E SG LTIATTHTQARYALPS +Q FT RYPKV+L L QGNP QI + +G AD IATEAI F ELVMLPCY WNRC+I PP HPLLK K LTLEAIA++PIITYDFAFTGRS+IN AF+ +GL NVVLTAID+DVIKTYV LGLGIGILA MA++P+RD +LRA+DASHLFE STTRIG+ RN+YLR YVYDFIEMFAPHL R V A+
Sbjct: 72 RMLRDAKNLKQVGQEFANEASGSLTIATTHTQARYALPSAIQHFTARYPKVRLVLRQGNPTQIAELVTSGVADIAIATEAIELFSELVMLPCYQWNRCIIVPPRHPLLKLKELTLEAIAEHPIITYDFAFTGRSKINQAFDAKGLVPNVVLTAIDADVIKTYVELGLGIGILAQMAFEPSRDRHLRAIDASHLFEPSTTRIGISRNSYLRKYVYDFIEMFAPHLDRATVAAAM 304
BLAST of mRNA_P-wetherbeei_contig13900.1.1 vs. uniprot
Match: A0A5C7JBV1_9RHOO (HTH-type transcriptional regulator CysB n=1 Tax=Rhodocyclaceae bacterium TaxID=1898103 RepID=A0A5C7JBV1_9RHOO) HSP 1 Score: 337 bits (865), Expect = 8.540e-114 Identity = 168/238 (70.59%), Postives = 190/238 (79.83%), Query Frame = 1
Query: 1 RSLQEADNLKQAAQDFADEDSGKLTIATTHTQARYALPSVVQRFTQRYPKVKLGLVQGNPMQICQYTLAGQADFCIATEAIGTFEELVMLPCYAWNRCVITPPDHPLLKQKSLTLEAIAKYPIITYDFAFTGRSQINHAFETRGLTTNVVLTAIDSDVIKTYVALGLGIGILAHMAYDPARDTNLRALDASHLFESSTTRIGVPRNAYLRSYVYDFIEMFAPHLSRKVVDGAVHSKAH 714
R L++ DNLKQ +FA E SG L IATTHTQARYALP V+++F +RYP V+L L QGNP Q C+Y L+G+AD +ATEAI F +LVMLPCY WNR VI PP HP+L +K LTLEAIA+YPIITYDFAFTGRSQIN AF +RGL NV LTAIDSDVIKTYVALGLGIGI+A MAY+PA D NL DASHLFESSTTRIGV RNAYLR Y Y FIE+FAPHL+RKVVD A+ H
Sbjct: 72 RVLRDIDNLKQVGAEFAREASGSLGIATTHTQARYALPPVIRKFVERYPGVQLSLHQGNPSQCCEYVLSGEADIAVATEAISEFGDLVMLPCYQWNRVVIAPPGHPILAEKPLTLEAIARYPIITYDFAFTGRSQINKAFLSRGLRPNVTLTAIDSDVIKTYVALGLGIGIIAGMAYNPADDRNLGMADASHLFESSTTRIGVRRNAYLRGYTYAFIELFAPHLTRKVVDAALAGHGH 309
BLAST of mRNA_P-wetherbeei_contig13900.1.1 vs. uniprot
Match: A0A1I4MZT2_9PROT (DNA-binding transcriptional dual regulator, O-acetyl-L-serine-binding n=2 Tax=Nitrosomonas nitrosa TaxID=52442 RepID=A0A1I4MZT2_9PROT) HSP 1 Score: 336 bits (861), Expect = 3.960e-113 Identity = 164/234 (70.09%), Postives = 196/234 (83.76%), Query Frame = 1
Query: 7 LQEADNLKQAAQDFADEDSGKLTIATTHTQARYALPSVVQRFTQRYPKVKLGLVQGNPMQICQYTLAGQADFCIATEAIGTFEELVMLPCYAWNRCVITPPDHPLLKQKSLTLEAIAKYPIITYDFAFTGRSQINHAFETRGLTTNVVLTAIDSDVIKTYVALGLGIGILAHMAYDPARDTNLRALDASHLFESSTTRIGVPRNAYLRSYVYDFIEMFAPHLSRKVVDGAVHSK 708
L++A+NLKQ +F+D SG+L IATTHTQARYALP +++RFT+RYPKVKL L QG+P QI + +G+A+ IATEAI FEELVMLPCY WNRC+I PP HPLL+Q+ +TLEAIA YPIITYDFAFTGRS+IN AFE++ LT NVVLTAID+DVIKTYV LGLGIGILA MA+DP RD +LRA+DASHLFE+S TRIG+ RN+Y+RSYVYDFIEMFAPHL + V A+ SK
Sbjct: 74 LKDAENLKQIGLEFSDSASGELIIATTHTQARYALPPIIKRFTERYPKVKLILRQGSPTQISELVSSGEANLAIATEAIELFEELVMLPCYQWNRCIIVPPKHPLLRQQPVTLEAIALYPIITYDFAFTGRSKINQAFESKKLTPNVVLTAIDADVIKTYVELGLGIGILAKMAFDPHRDKHLRAIDASHLFEASMTRIGISRNSYIRSYVYDFIEMFAPHLDQATVKAAMKSK 307
BLAST of mRNA_P-wetherbeei_contig13900.1.1 vs. uniprot
Match: A0A1H3NCB8_9PROT (LysR family transcriptional regulator, cys regulon transcriptional activator n=2 Tax=unclassified Nitrosomonas TaxID=2609265 RepID=A0A1H3NCB8_9PROT) HSP 1 Score: 336 bits (861), Expect = 4.240e-113 Identity = 166/236 (70.34%), Postives = 193/236 (81.78%), Query Frame = 1
Query: 1 RSLQEADNLKQAAQDFADEDSGKLTIATTHTQARYALPSVVQRFTQRYPKVKLGLVQGNPMQICQYTLAGQADFCIATEAIGTFEELVMLPCYAWNRCVITPPDHPLLKQKSLTLEAIAKYPIITYDFAFTGRSQINHAFETRGLTTNVVLTAIDSDVIKTYVALGLGIGILAHMAYDPARDTNLRALDASHLFESSTTRIGVPRNAYLRSYVYDFIEMFAPHLSRKVVDGAVHSK 708
R L++A+NLKQ Q+F+D+ SG L IATTHTQARYALP V++RF +RYPKVKL L QG+P QI +G+AD IATEAI F+ELVMLPCY WNR +I PP HPLLKQ LTLEAIA+YPIITYDFAFTGRS+IN AFE++GL NVVLTAID+DVIKTYV LGLGIGILA MA+DP RD +LRA+DA HLFESSTTRIG+ RN+Y+R YVYDFIEMFAPHL + V A+ K
Sbjct: 72 RMLRDAENLKQIGQEFSDKASGTLVIATTHTQARYALPPVIKRFAERYPKVKLILRQGSPTQISTLVSSGEADLAIATEAIELFQELVMLPCYQWNRSIIAPPKHPLLKQHPLTLEAIAQYPIITYDFAFTGRSKINQAFESKGLAPNVVLTAIDADVIKTYVELGLGIGILAKMAFDPQRDKHLRAIDADHLFESSTTRIGISRNSYIRCYVYDFIEMFAPHLDQATVKAAMKIK 307
BLAST of mRNA_P-wetherbeei_contig13900.1.1 vs. uniprot
Match: A0A5C7V8C9_9PROT (HTH-type transcriptional regulator CysB n=1 Tax=Nitrosomonas sp. TaxID=42353 RepID=A0A5C7V8C9_9PROT) HSP 1 Score: 335 bits (859), Expect = 7.710e-113 Identity = 161/238 (67.65%), Postives = 192/238 (80.67%), Query Frame = 1
Query: 1 RSLQEADNLKQAAQDFADEDSGKLTIATTHTQARYALPSVVQRFTQRYPKVKLGLVQGNPMQICQYTLAGQADFCIATEAIGTFEELVMLPCYAWNRCVITPPDHPLLKQKSLTLEAIAKYPIITYDFAFTGRSQINHAFETRGLTTNVVLTAIDSDVIKTYVALGLGIGILAHMAYDPARDTNLRALDASHLFESSTTRIGVPRNAYLRSYVYDFIEMFAPHLSRKVVDGAVHSKAH 714
R LQ+A+NLK Q+F ++ SG LTIATTHTQARYALP V++RFT+RYP VKL L QGNP QI +G+AD IATEAI F +L+MLPCY WNRC++ PP+HPLL LTLEAIA+YPI+TYDFAFTGRS+IN AFE GL NVVLTAIDSDVIKTYV LGLGIGILA+MA+DP RD +LR++DASHLFE STTR+G+ RN+Y+R Y YDFIEMFAPHL+ VV A+ K++
Sbjct: 72 RMLQDAENLKSVGQEFNNQTSGTLTIATTHTQARYALPPVIKRFTERYPNVKLTLRQGNPTQIATLVSSGEADLAIATEAIELFHDLIMLPCYQWNRCIVVPPNHPLLDSPILTLEAIAQYPIVTYDFAFTGRSKINRAFEASGLNPNVVLTAIDSDVIKTYVELGLGIGILANMAFDPLRDQHLRSIDASHLFEPSTTRVGISRNSYIRGYSYDFIEMFAPHLNHDVVKSAMKGKSN 309
BLAST of mRNA_P-wetherbeei_contig13900.1.1 vs. uniprot
Match: UPI001ACD213A (HTH-type transcriptional regulator SsuR n=1 Tax=Rhodocyclaceae bacterium TaxID=1898103 RepID=UPI001ACD213A) HSP 1 Score: 333 bits (855), Expect = 2.920e-112 Identity = 158/232 (68.10%), Postives = 193/232 (83.19%), Query Frame = 1
Query: 1 RSLQEADNLKQAAQDFADEDSGKLTIATTHTQARYALPSVVQRFTQRYPKVKLGLVQGNPMQICQYTLAGQADFCIATEAIGTFEELVMLPCYAWNRCVITPPDHPLLKQKSLTLEAIAKYPIITYDFAFTGRSQINHAFETRGLTTNVVLTAIDSDVIKTYVALGLGIGILAHMAYDPARDTNLRALDASHLFESSTTRIGVPRNAYLRSYVYDFIEMFAPHLSRKVVDGA 696
R L++ DNL+ Q+F E++G L IATTHTQARY LP +VQ+F +R+P V++ L QG+P ++C + LAG+AD IATEAIG ++LVMLPCY WNRCVI PP+HP+LK K LTLEAIA+YPIITYDFAFTGRSQIN AF RGL NVVLTAID+D+IKTYVA+GLGIGI+A+MAYDPA D LRA+DA+HLFES+TTRIG+ RNA+LRSYVY F E+FAPHL+RK+V A
Sbjct: 72 RLLRDLDNLRSVGQEFGAEEAGTLAIATTHTQARYVLPPIVQQFMRRHPNVRVSLHQGSPTEVCDFVLAGEADLAIATEAIGEQDDLVMLPCYQWNRCVIAPPEHPILKAKPLTLEAIARYPIITYDFAFTGRSQINKAFAARGLEPNVVLTAIDADIIKTYVAMGLGIGIVAYMAYDPAADKGLRAVDAAHLFESATTRIGIRRNAWLRSYVYTFFELFAPHLTRKMVMAA 303
BLAST of mRNA_P-wetherbeei_contig13900.1.1 vs. uniprot
Match: A0A1I2YMD6_9PROT (LysR family transcriptional regulator, cys regulon transcriptional activator n=2 Tax=unclassified Nitrosospira TaxID=2609267 RepID=A0A1I2YMD6_9PROT) HSP 1 Score: 333 bits (854), Expect = 3.380e-112 Identity = 160/236 (67.80%), Postives = 193/236 (81.78%), Query Frame = 1
Query: 1 RSLQEADNLKQAAQDFADEDSGKLTIATTHTQARYALPSVVQRFTQRYPKVKLGLVQGNPMQICQYTLAGQADFCIATEAIGTFEELVMLPCYAWNRCVITPPDHPLLKQKSLTLEAIAKYPIITYDFAFTGRSQINHAFETRGLTTNVVLTAIDSDVIKTYVALGLGIGILAHMAYDPARDTNLRALDASHLFESSTTRIGVPRNAYLRSYVYDFIEMFAPHLSRKVVDGAVHSK 708
R L++A NLK+ Q+FADE SG LTIATTHTQARYALP+ ++ FT RYPKVKL L QGNP QI + +G AD IATEAI F+ELVMLPCY WNRC++ P HPLLK + LTLE IA++PI+TYDFAFTGRS+IN AF+ +GLT NVVLTAID+DVIKTYV LGLG+GILA MA++P RD +LRA+DASHLFE+STTRIG+ RN+YLR Y+Y+FIE+FAPHL KVV A+ +
Sbjct: 72 RMLRDAKNLKKIGQEFADEASGSLTIATTHTQARYALPATIKHFTARYPKVKLILRQGNPTQIAELVTSGVADIAIATEAIELFDELVMLPCYQWNRCIVVPSRHPLLKLEKLTLEDIAQHPIVTYDFAFTGRSKINQAFDAKGLTPNVVLTAIDADVIKTYVELGLGVGILAQMAFEPKRDKHLRAIDASHLFEASTTRIGISRNSYLRGYIYEFIELFAPHLDHKVVTAAMQER 307
BLAST of mRNA_P-wetherbeei_contig13900.1.1 vs. uniprot
Match: A0A1I1VXT7_9PROT (LysR family transcriptional regulator, cys regulon transcriptional activator n=1 Tax=Nitrosomonas sp. Nm166 TaxID=1881054 RepID=A0A1I1VXT7_9PROT) HSP 1 Score: 333 bits (854), Expect = 4.430e-112 Identity = 163/235 (69.36%), Postives = 189/235 (80.43%), Query Frame = 1
Query: 1 RSLQEADNLKQAAQDFADEDSGKLTIATTHTQARYALPSVVQRFTQRYPKVKLGLVQGNPMQICQYTLAGQADFCIATEAIGTFEELVMLPCYAWNRCVITPPDHPLLKQKSLTLEAIAKYPIITYDFAFTGRSQINHAFETRGLTTNVVLTAIDSDVIKTYVALGLGIGILAHMAYDPARDTNLRALDASHLFESSTTRIGVPRNAYLRSYVYDFIEMFAPHLSRKVVDGAVHS 705
R L++ADNLK+ AQ+F +E +G LTIATTHTQARY LP V++RFT RYPKVKL L QG+PMQ+ +G+AD IATEAI F ELVMLPCY WNRCV+ PP HPLLK K LTLEAI +YPIITYDFAFTGRS+IN AF +GL NVVLTAIDSDVIKTYV LGLGIGILA+MA+DP RD LRA+DASHLFE STTRIG+ RN+Y+R YV+DFIEMF+PHL + + S
Sbjct: 72 RMLRDADNLKKIAQEFTNEANGTLTIATTHTQARYVLPPVIKRFTARYPKVKLILRQGSPMQVSTLVTSGEADIAIATEAIEQFHELVMLPCYQWNRCVVVPPRHPLLKLKKLTLEAINQYPIITYDFAFTGRSKINQAFANQGLEPNVVLTAIDSDVIKTYVELGLGIGILANMAFDPKRDKGLRAIDASHLFEPSTTRIGISRNSYIRGYVFDFIEMFSPHLDHATIQAKLES 306
BLAST of mRNA_P-wetherbeei_contig13900.1.1 vs. uniprot
Match: A0A1H8HS06_9PROT (LysR family transcriptional regulator, cys regulon transcriptional activator n=2 Tax=Nitrosomonas marina TaxID=917 RepID=A0A1H8HS06_9PROT) HSP 1 Score: 333 bits (853), Expect = 4.960e-112 Identity = 161/227 (70.93%), Postives = 191/227 (84.14%), Query Frame = 1
Query: 7 LQEADNLKQAAQDFADEDSGKLTIATTHTQARYALPSVVQRFTQRYPKVKLGLVQGNPMQICQYTLAGQADFCIATEAIGTFEELVMLPCYAWNRCVITPPDHPLLKQKSLTLEAIAKYPIITYDFAFTGRSQINHAFETRGLTTNVVLTAIDSDVIKTYVALGLGIGILAHMAYDPARDTNLRALDASHLFESSTTRIGVPRNAYLRSYVYDFIEMFAPHLSRKVV 687
LQEADNLK+AAQ++ EDSG LTIATTHTQARY LP V+++FT +PKV L L QG+P QI +G+AD IATEAI F EL+MLPCY WNRC++ PP+HPLL++K LTLEAI++YPIITYDFAFTGRS+IN AFE +GLT NVVLTAIDSDVIKTYV LGLGIGILA MA+DP RD +L A+DASHLF+SSTTRIG+ RN YL+ +V+DFIEMFAPHL+R V+
Sbjct: 74 LQEADNLKKAAQEYTHEDSGTLTIATTHTQARYVLPPVIKQFTALHPKVSLILRQGSPTQISALVTSGEADIAIATEAIEHFHELIMLPCYQWNRCIVVPPEHPLLQEKKLTLEAISQYPIITYDFAFTGRSKINQAFEKKGLTPNVVLTAIDSDVIKTYVELGLGIGILAKMAFDPLRDKHLEAIDASHLFDSSTTRIGISRNNYLQRFVFDFIEMFAPHLNRTVI 300
BLAST of mRNA_P-wetherbeei_contig13900.1.1 vs. uniprot
Match: A0A523HA49_9PROT (HTH-type transcriptional regulator CysB n=2 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A523HA49_9PROT) HSP 1 Score: 332 bits (850), Expect = 1.370e-111 Identity = 164/233 (70.39%), Postives = 186/233 (79.83%), Query Frame = 1
Query: 1 RSLQEADNLKQAAQDFADEDSGKLTIATTHTQARYALPSVVQRFTQRYPKVKLGLVQGNPMQICQYTLAGQADFCIATEAIGTFEELVMLPCYAWNRCVITPPDHPLLKQKSLTLEAIAKYPIITYDFAFTGRSQINHAFETRGLTTNVVLTAIDSDVIKTYVALGLGIGILAHMAYDPARDTNLRALDASHLFESSTTRIGVPRNAYLRSYVYDFIEMFAPHLSRKVVDGAV 699
R L+E NLK+ Q+F ++DSG LTIATTHTQARY LP + RFT RYPKVKL L QGNP QI + +G+AD IATEAI F ELVMLPCY WNRC+ITPP HPLLK LTLEAIA+YPIITYDFAFTGRS+INHAFE +GL NVVLTAID+DVIKTYV L LGIGI+A MA+DP RD +LR++DASHLFE STTRIG+ RN+YLRSYV DFI MFAPHL V A+
Sbjct: 72 RMLKETKNLKRVGQEFTNKDSGSLTIATTHTQARYVLPPTISRFTARYPKVKLILRQGNPTQISELVASGEADIAIATEAIELFHELVMLPCYQWNRCIITPPKHPLLKLSKLTLEAIARYPIITYDFAFTGRSKINHAFEAKGLAPNVVLTAIDADVIKTYVELRLGIGIVAKMAFDPKRDKHLRSMDASHLFEPSTTRIGISRNSYLRSYVLDFIGMFAPHLDYATVKTAM 304 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13900.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig13900.1.1 >prot_P-wetherbeei_contig13900.1.1 ID=prot_P-wetherbeei_contig13900.1.1|Name=mRNA_P-wetherbeei_contig13900.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=244bp RSLQEADNLKQAAQDFADEDSGKLTIATTHTQARYALPSVVQRFTQRYPKback to top mRNA from alignment at P-wetherbeei_contig13900:2..733+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig13900.1.1 ID=mRNA_P-wetherbeei_contig13900.1.1|Name=mRNA_P-wetherbeei_contig13900.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=732bp|location=Sequence derived from alignment at P-wetherbeei_contig13900:2..733+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig13900:2..733+ >mRNA_P-wetherbeei_contig13900.1.1 ID=mRNA_P-wetherbeei_contig13900.1.1|Name=mRNA_P-wetherbeei_contig13900.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=732bp|location=Sequence derived from alignment at P-wetherbeei_contig13900:2..733+ (Phaeothamnion wetherbeei SAG_119_79)back to top |