mRNA_P-wetherbeei_contig1390.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1390.4.1
Unique NamemRNA_P-wetherbeei_contig1390.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1390.4.1 vs. uniprot
Match: A0A7S3MN65_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Favella ehrenbergii TaxID=182087 RepID=A0A7S3MN65_9SPIT)

HSP 1 Score: 53.9 bits (128), Expect = 2.200e-5
Identity = 24/62 (38.71%), Postives = 34/62 (54.84%), Query Frame = 3 
Query:  576 RVFSRAMANSRHARQFAKPCFHTFGAANTAPATGGVLYGNYMLTHSKWPSVSPNHPPAPQTY 761
            ++  R + +S     F KP FH +G  NT PA+GG++YG Y+ TH+  P    N P   Q Y
Sbjct:   29 KLEGRLLPDSAMTTYFGKPAFHAYGNGNTRPASGGLIYGQYLKTHNINPHSGDNKPHNQQVY 90
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1390.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3MN65_9SPIT2.200e-538.71Hypothetical protein (Fragment) n=1 Tax=Favella eh... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1390contigP-wetherbeei_contig1390:5369..6721 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1353
Hectar predicted targeting categoryother localisation
Exons1
Cds size900
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186001.0971448-UTR-P-wetherbeei_contig1390:5368..56361683186001.0971448-UTR-P-wetherbeei_contig1390:5368..5636Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1390 5369..5636 -
1683186001.1156657-UTR-P-wetherbeei_contig1390:6536..67211683186001.1156657-UTR-P-wetherbeei_contig1390:6536..6721Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1390 6537..6721 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186001.106307-CDS-P-wetherbeei_contig1390:5636..65361683186001.106307-CDS-P-wetherbeei_contig1390:5636..6536Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1390 5637..6536 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1390.4.1prot_P-wetherbeei_contig1390.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1390 5637..6536 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1390.4.1

>prot_P-wetherbeei_contig1390.4.1 ID=prot_P-wetherbeei_contig1390.4.1|Name=mRNA_P-wetherbeei_contig1390.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=300bp
MGAPVTTTMQQRETMLSLLQWPEPMRRATVARAKGKSTAFPTTETRAQFI
YPAGIGPLAEAVTIEPADLDGHTLSPAKEEAARESEAAGEGKKKIGRRRR
LGAKCGKAGGEAAAPADADNGAGAADGRVQRVFSRAMANSRHARQFAKPC
FHTFGAANTAPATGGVLYGNYMLTHSKWPSVSPNHPPAPQTYPHVEKIVT
ARLKKVEDAVAVAAAPPVPSPAAEEAAEAEAAAAAAAAAAAAAADGSASR
PPGGPPGGVAANVAKSYKYLPRGWERLIVPAGKPTPPSDHVSDCIAIGG*
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mRNA from alignment at P-wetherbeei_contig1390:5369..6721-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1390.4.1 ID=mRNA_P-wetherbeei_contig1390.4.1|Name=mRNA_P-wetherbeei_contig1390.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1353bp|location=Sequence derived from alignment at P-wetherbeei_contig1390:5369..6721- (Phaeothamnion wetherbeei SAG_119_79)
GTTCTTCCCCCCTCCGCGACTGTTCGGATTAAGGGATGACGGTTGGACAT
TAACAAGGCGCACTGACAGCGTTGCCCGTTCCAGCAGGGCTTCAGCTCGT
GAGGCCGGCCGCCGCATCTCGGGAGTGCTACACAATCAACTGAAGGGCCA
GAGACAGCCTGGCAGAAAACCTCCTCGCGCAAACCATGGGTGCACCTGTG
ACGACGACGATGCAGCAGCGCGAAACCATGCTTTCTCTCTTGCAATGGCC
CGAGCCCATGAGGCGCGCGACCGTAGCCCGGGCGAAGGGAAAGTCCACAG
CATTCCCTACCACGGAGACTCGTGCGCAGTTCATTTACCCGGCCGGGATC
GGGCCGCTTGCCGAGGCGGTAACGATCGAGCCCGCCGACCTGGACGGGCA
CACTCTGAGCCCTGCCAAGGAAGAAGCTGCGCGGGAAAGCGAAGCTGCCG
GAGAAGGAAAAAAGAAGATCGGAAGGCGCCGACGGCTGGGCGCCAAATGC
GGCAAGGCAGGTGGAGAAGCTGCCGCGCCCGCCGACGCGGACAACGGCGC
CGGCGCAGCTGACGGCCGGGTCCAGCGCGTCTTCAGCCGCGCCATGGCCA
ACAGCAGGCACGCCCGCCAGTTCGCCAAGCCGTGCTTCCACACCTTCGGC
GCCGCCAACACAGCGCCGGCGACGGGCGGCGTCCTCTACGGAAACTACAT
GCTGACGCACTCCAAGTGGCCGTCAGTGTCCCCCAACCACCCGCCGGCGC
CGCAGACCTACCCGCATGTCGAGAAGATTGTCACCGCCCGCCTCAAAAAG
GTCGAAGACGCCGTTGCGGTGGCCGCCGCTCCGCCTGTGCCCTCGCCGGC
GGCGGAAGAAGCTGCCGAGGCTGAAGCTGCCGCCGCAGCTGCTGCCGCGG
CTGCCGCCGCGGCAGCAGACGGCTCGGCGTCGAGGCCGCCAGGAGGGCCG
CCCGGAGGCGTGGCCGCCAACGTCGCCAAAAGCTACAAGTATCTGCCGCG
CGGGTGGGAGCGATTGATCGTGCCGGCCGGTAAGCCGACGCCCCCGTCGG
ACCATGTTTCAGACTGCATTGCCATCGGCGGCTGAAAGAGGAAAGGTCTG
CGAGGAGCTGCAAAAGGCGGGCGATTCATTGGGGGAGCCTGAGGAATAAT
TTCGCTGCCGCATGCTTCGTCTTGGCAAGGTGTGTCCGCGGTATTCGGGA
AGCAAGGAAAGTTAGTAAGAGAGGGAAGGGGAAGTGTGGGCTGGCAAAGA
ATTAGCGGTTGTTTCTTCTCGCGGGTCGCCACTCCCTGGTGAAACATGTG
CGGGAATTGGACGGAACCTGTGCAAGCGTTAAAAAAAATCCCTAGGAGTT
TGT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1390:5369..6721-

>mRNA_P-wetherbeei_contig1390.4.1 ID=mRNA_P-wetherbeei_contig1390.4.1|Name=mRNA_P-wetherbeei_contig1390.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=900bp|location=Sequence derived from alignment at P-wetherbeei_contig1390:5369..6721- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGTGCACCTGTGACGACGACGATGCAGCAGCGCGAAACCATGCTTTC
TCTCTTGCAATGGCCCGAGCCCATGAGGCGCGCGACCGTAGCCCGGGCGA
AGGGAAAGTCCACAGCATTCCCTACCACGGAGACTCGTGCGCAGTTCATT
TACCCGGCCGGGATCGGGCCGCTTGCCGAGGCGGTAACGATCGAGCCCGC
CGACCTGGACGGGCACACTCTGAGCCCTGCCAAGGAAGAAGCTGCGCGGG
AAAGCGAAGCTGCCGGAGAAGGAAAAAAGAAGATCGGAAGGCGCCGACGG
CTGGGCGCCAAATGCGGCAAGGCAGGTGGAGAAGCTGCCGCGCCCGCCGA
CGCGGACAACGGCGCCGGCGCAGCTGACGGCCGGGTCCAGCGCGTCTTCA
GCCGCGCCATGGCCAACAGCAGGCACGCCCGCCAGTTCGCCAAGCCGTGC
TTCCACACCTTCGGCGCCGCCAACACAGCGCCGGCGACGGGCGGCGTCCT
CTACGGAAACTACATGCTGACGCACTCCAAGTGGCCGTCAGTGTCCCCCA
ACCACCCGCCGGCGCCGCAGACCTACCCGCATGTCGAGAAGATTGTCACC
GCCCGCCTCAAAAAGGTCGAAGACGCCGTTGCGGTGGCCGCCGCTCCGCC
TGTGCCCTCGCCGGCGGCGGAAGAAGCTGCCGAGGCTGAAGCTGCCGCCG
CAGCTGCTGCCGCGGCTGCCGCCGCGGCAGCAGACGGCTCGGCGTCGAGG
CCGCCAGGAGGGCCGCCCGGAGGCGTGGCCGCCAACGTCGCCAAAAGCTA
CAAGTATCTGCCGCGCGGGTGGGAGCGATTGATCGTGCCGGCCGGTAAGC
CGACGCCCCCGTCGGACCATGTTTCAGACTGCATTGCCATCGGCGGCTGA
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