mRNA_P-wetherbeei_contig1390.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1390.1.1
Unique NamemRNA_P-wetherbeei_contig1390.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1390.1.1 vs. uniprot
Match: A0A8K1D5J4_9PASS (Uncharacterized protein n=1 Tax=Zosterops borbonicus TaxID=364589 RepID=A0A8K1D5J4_9PASS)

HSP 1 Score: 121 bits (304), Expect = 2.630e-34
Identity = 54/68 (79.41%), Postives = 65/68 (95.59%), Query Frame = 1 
Query:   16 QVASVDSFQGREKDFIILTCVRSNEHQGIGFLSDPRRLNVALTRAKYGVVLVGNPRILSKNPLWNALI 219
            ++ASVD+FQGREKDFIIL+CVR+NEHQGIGFL+DPRRLNVALTRA+YGV++VGNP+ LSK PLWN L+
Sbjct:    3 EIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLL 70
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BLAST of mRNA_P-wetherbeei_contig1390.1.1 vs. uniprot
Match: A0A820ZTR2_9BILA (Hypothetical protein n=1 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A820ZTR2_9BILA)

HSP 1 Score: 121 bits (303), Expect = 2.860e-34
Identity = 52/68 (76.47%), Postives = 65/68 (95.59%), Query Frame = 1 
Query:   16 QVASVDSFQGREKDFIILTCVRSNEHQGIGFLSDPRRLNVALTRAKYGVVLVGNPRILSKNPLWNALI 219
            +V SVD+FQGREKDFIIL+CVR+NEHQGIGFL+DPRRLNVALTRAKYG++++GNP++LS+ PLWN L+
Sbjct:    2 EVVSVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRAKYGIIIIGNPKVLSRQPLWNHLL 69
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BLAST of mRNA_P-wetherbeei_contig1390.1.1 vs. uniprot
Match: UPI00155E6344 (regulator of nonsense transcripts 1-like n=1 Tax=Etheostoma cragini TaxID=417921 RepID=UPI00155E6344)

HSP 1 Score: 122 bits (307), Expect = 1.390e-33
Identity = 55/68 (80.88%), Postives = 65/68 (95.59%), Query Frame = 1 
Query:   16 QVASVDSFQGREKDFIILTCVRSNEHQGIGFLSDPRRLNVALTRAKYGVVLVGNPRILSKNPLWNALI 219
            ++ASVD+FQGREKDFIIL+CVR+NEHQGIGFL+DPRRLNVALTRAKYGV++VGNP+ LSK PLWN L+
Sbjct:   16 EIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRAKYGVIIVGNPKALSKQPLWNNLL 83
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BLAST of mRNA_P-wetherbeei_contig1390.1.1 vs. uniprot
Match: UPI000C1CEACB (regulator of nonsense transcripts 1 homolog n=1 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1CEACB)

HSP 1 Score: 124 bits (311), Expect = 1.640e-33
Identity = 55/68 (80.88%), Postives = 66/68 (97.06%), Query Frame = 1 
Query:   16 QVASVDSFQGREKDFIILTCVRSNEHQGIGFLSDPRRLNVALTRAKYGVVLVGNPRILSKNPLWNALI 219
            +VASVDSFQGREKD+IIL+CVRSNEHQGIGFL+DPRRLNVALTRA+YG+V++GNP++LSK PLWN L+
Sbjct:  152 EVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNGLL 219
[Close]
BLAST of mRNA_P-wetherbeei_contig1390.1.1 vs. uniprot
Match: A0A7S0PTW1_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0PTW1_9EUKA)

HSP 1 Score: 119 bits (299), Expect = 1.820e-33
Identity = 54/68 (79.41%), Postives = 65/68 (95.59%), Query Frame = 1 
Query:   16 QVASVDSFQGREKDFIILTCVRSNEHQGIGFLSDPRRLNVALTRAKYGVVLVGNPRILSKNPLWNALI 219
            +VASVD+FQGREKDFI+L+CVRSNE QGIGFLSDPRRLNVALTRA+YG+V++GNP++LSK PLWN L+
Sbjct:   37 EVASVDAFQGREKDFILLSCVRSNERQGIGFLSDPRRLNVALTRARYGLVVLGNPKVLSKQPLWNNLL 104
[Close]
BLAST of mRNA_P-wetherbeei_contig1390.1.1 vs. uniprot
Match: UPI001C4BBE8A (regulator of nonsense transcripts 1-like n=2 Tax=Sceloporus undulatus TaxID=8520 RepID=UPI001C4BBE8A)

HSP 1 Score: 121 bits (304), Expect = 2.110e-33
Identity = 54/68 (79.41%), Postives = 65/68 (95.59%), Query Frame = 1 
Query:   16 QVASVDSFQGREKDFIILTCVRSNEHQGIGFLSDPRRLNVALTRAKYGVVLVGNPRILSKNPLWNALI 219
            ++ASVD+FQGREKDFIIL+CVR+NEHQGIGFL+DPRRLNVALTRA+YGV++VGNP+ LSK PLWN L+
Sbjct:   38 EIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLL 105
[Close]
BLAST of mRNA_P-wetherbeei_contig1390.1.1 vs. uniprot
Match: A0A7R9XQA8_9CHLO (Hypothetical protein n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A7R9XQA8_9CHLO)

HSP 1 Score: 123 bits (308), Expect = 2.530e-33
Identity = 55/68 (80.88%), Postives = 66/68 (97.06%), Query Frame = 1 
Query:   16 QVASVDSFQGREKDFIILTCVRSNEHQGIGFLSDPRRLNVALTRAKYGVVLVGNPRILSKNPLWNALI 219
            +VASVD+FQGREKD I+L+CVRSN+H GIGFLSDPRRLNVALTRAKYG+++VGNPR+LSK+PLWNAL+
Sbjct:   63 EVASVDAFQGREKDVIVLSCVRSNDHHGIGFLSDPRRLNVALTRAKYGLIVVGNPRVLSKHPLWNALL 130
[Close]
BLAST of mRNA_P-wetherbeei_contig1390.1.1 vs. uniprot
Match: A0A7S3XS25_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XS25_HETAK)

HSP 1 Score: 126 bits (317), Expect = 3.670e-33
Identity = 61/68 (89.71%), Postives = 65/68 (95.59%), Query Frame = 1 
Query:   16 QVASVDSFQGREKDFIILTCVRSNEHQGIGFLSDPRRLNVALTRAKYGVVLVGNPRILSKNPLWNALI 219
            +VASVDSFQGREKDFIILTCVRSNEHQGIGFLSDPRRLNVALTRAKYGV +VGN R+LSK+PLW ALI
Sbjct:  347 EVASVDSFQGREKDFIILTCVRSNEHQGIGFLSDPRRLNVALTRAKYGVAVVGNARVLSKDPLWYALI 414
[Close]
BLAST of mRNA_P-wetherbeei_contig1390.1.1 vs. uniprot
Match: A0A0C3PP96_PHLGI (AAA_12 domain-containing protein n=1 Tax=Phlebiopsis gigantea 11061_1 CR5-6 TaxID=745531 RepID=A0A0C3PP96_PHLGI)

HSP 1 Score: 122 bits (306), Expect = 5.320e-33
Identity = 55/68 (80.88%), Postives = 67/68 (98.53%), Query Frame = 1 
Query:   16 QVASVDSFQGREKDFIILTCVRSNEHQGIGFLSDPRRLNVALTRAKYGVVLVGNPRILSKNPLWNALI 219
            +VASVD+FQGREKD+IIL+CVRSNEHQGIGFL+DPRRLNVALTRAKYGVV++GNP++LSK+PLW+ L+
Sbjct:  108 EVASVDAFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRAKYGVVILGNPKVLSKHPLWHYLL 175
[Close]
BLAST of mRNA_P-wetherbeei_contig1390.1.1 vs. uniprot
Match: A0A0C3Q639_9AGAM (AAA_12 domain-containing protein n=1 Tax=Tulasnella calospora MUT 4182 TaxID=1051891 RepID=A0A0C3Q639_9AGAM)

HSP 1 Score: 123 bits (309), Expect = 5.970e-33
Identity = 56/68 (82.35%), Postives = 67/68 (98.53%), Query Frame = 1 
Query:   16 QVASVDSFQGREKDFIILTCVRSNEHQGIGFLSDPRRLNVALTRAKYGVVLVGNPRILSKNPLWNALI 219
            +VASVD+FQGREKD+IIL+CVRSNEHQGIGFLSDPRRLNVALTRAKYGVV++GNP++LSK+PLW+ L+
Sbjct:   16 EVASVDAFQGREKDYIILSCVRSNEHQGIGFLSDPRRLNVALTRAKYGVVILGNPKVLSKHPLWHYLL 83
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1390.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8K1D5J4_9PASS2.630e-3479.41Uncharacterized protein n=1 Tax=Zosterops borbonic... [more]
A0A820ZTR2_9BILA2.860e-3476.47Hypothetical protein n=1 Tax=Rotaria sp. Silwood2 ... [more]
UPI00155E63441.390e-3380.88regulator of nonsense transcripts 1-like n=1 Tax=E... [more]
UPI000C1CEACB1.640e-3380.88regulator of nonsense transcripts 1 homolog n=1 Ta... [more]
A0A7S0PTW1_9EUKA1.820e-3379.41Hypothetical protein (Fragment) n=1 Tax=Coccolithu... [more]
UPI001C4BBE8A2.110e-3379.41regulator of nonsense transcripts 1-like n=2 Tax=S... [more]
A0A7R9XQA8_9CHLO2.530e-3380.88Hypothetical protein n=1 Tax=Pycnococcus provasoli... [more]
A0A7S3XS25_HETAK3.670e-3389.71Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A0C3PP96_PHLGI5.320e-3380.88AAA_12 domain-containing protein n=1 Tax=Phlebiops... [more]
A0A0C3Q639_9AGAM5.970e-3382.35AAA_12 domain-containing protein n=1 Tax=Tulasnell... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1390contigP-wetherbeei_contig1390:9..227 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FN00
Preferred nameUPF1
PFAMsAAA_11,AAA_12,ResIII,UPF1_Zn_bind
Model size219
Max annot lvl2759|Eukaryota
KEGG koko:K14326
KEGG Pathwayko03013,ko03015,map03013,map03015
KEGG ModuleM00430
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000166,GO:0000184,GO:0000228,GO:0000288,GO:0000291,GO:0000294,GO:0000723,GO:0000781,GO:0000784,GO:0000785,GO:0000932,GO:0000956,GO:0001101,GO:0001666,GO:0002237,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003723,GO:0003724,GO:0003729,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005694,GO:0005737,GO:0005829,GO:0005844,GO:0005886,GO:0005911,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006310,GO:0006325,GO:0006342,GO:0006355,GO:0006401,GO:0006402,GO:0006403,GO:0006405,GO:0006406,GO:0006417,GO:0006449,GO:0006464,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0006952,GO:0006974,GO:0006979,GO:0006996,GO:0007049,GO:0007154,GO:0007165,GO:0007275,GO:0007548,GO:0007549,GO:0008026,GO:0008104,GO:0008144,GO:0008150,GO:0008152,GO:0008186,GO:0008298,GO:0008334,GO:0009048,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009314,GO:0009416,GO:0009506,GO:0009605,GO:0009607,GO:0009611,GO:0009617,GO:0009628,GO:0009648,GO:0009653,GO:0009719,GO:0009725,GO:0009743,GO:0009751,GO:0009753,GO:0009755,GO:0009756,GO:0009790,GO:0009863,GO:0009867,GO:0009887,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010033,GO:0010182,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010608,GO:0010610,GO:0010629,GO:0014070,GO:0015031,GO:0015833,GO:0015931,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016246,GO:0016441,GO:0016458,GO:0016462,GO:0016567,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0017148,GO:0019219,GO:0019222,GO:0019439,GO:0019538,GO:0019725,GO:0019899,GO:0019902,GO:0019903,GO:0022402,GO:0022414,GO:0023052,GO:0030054,GO:0030466,GO:0030538,GO:0030554,GO:0031047,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031329,GO:0031331,GO:0031503,GO:0031974,GO:0031981,GO:0032200,GO:0032201,GO:0032204,GO:0032268,GO:0032269,GO:0032446,GO:0032496,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032870,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033260,GO:0033554,GO:0033993,GO:0034097,GO:0034248,GO:0034249,GO:0034427,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0035112,GO:0035145,GO:0035194,GO:0035639,GO:0035690,GO:0035770,GO:0036094,GO:0036211,GO:0036293,GO:0036294,GO:0036464,GO:0040029,GO:0042162,GO:0042221,GO:0042493,GO:0042592,GO:0042623,GO:0042742,GO:0042886,GO:0043021,GO:0043024,GO:0043167,GO:0043168,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043244,GO:0043412,GO:0043487,GO:0043488,GO:0043565,GO:0043928,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044530,GO:0044770,GO:0044786,GO:0044877,GO:0045184,GO:0045814,GO:0045892,GO:0045934,GO:0045935,GO:0046483,GO:0046677,GO:0046700,GO:0046907,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048562,GO:0048568,GO:0048571,GO:0048598,GO:0048608,GO:0048731,GO:0048806,GO:0048856,GO:0050657,GO:0050658,GO:0050779,GO:0050789,GO:0050794,GO:0050896,GO:0051028,GO:0051052,GO:0051128,GO:0051168,GO:0051169,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051234,GO:0051236,GO:0051246,GO:0051248,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051641,GO:0051649,GO:0051704,GO:0051707,GO:0051716,GO:0051721,GO:0055044,GO:0060249,GO:0060255,GO:0061013,GO:0061014,GO:0061157,GO:0061158,GO:0061458,GO:0065007,GO:0065008,GO:0070013,GO:0070035,GO:0070478,GO:0070482,GO:0070555,GO:0070647,GO:0070727,GO:0070887,GO:0071025,GO:0071027,GO:0071028,GO:0071030,GO:0071044,GO:0071166,GO:0071216,GO:0071219,GO:0071222,GO:0071229,GO:0071236,GO:0071310,GO:0071322,GO:0071345,GO:0071347,GO:0071395,GO:0071396,GO:0071407,GO:0071426,GO:0071427,GO:0071446,GO:0071453,GO:0071456,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0080090,GO:0090304,GO:0097159,GO:0097367,GO:0098542,GO:0098687,GO:0140098,GO:1901265,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901575,GO:1901576,GO:1901700,GO:1901701,GO:1902679,GO:1903311,GO:1903313,GO:1903506,GO:1903507,GO:1990904,GO:2000112,GO:2000113,GO:2000622,GO:2000624,GO:2000815,GO:2001141
Exons1
Evalue3.77e-33
EggNOG OGsCOG1112@1|root,KOG1802@2759|Eukaryota
Descriptionnuclear-transcribed mRNA catabolic process, nonsense-mediated decay
Cds size219
COG categoryL
BRITEko00000,ko00001,ko00002,ko01000,ko03019
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186001.146207-CDS-P-wetherbeei_contig1390:8..2271683186001.146207-CDS-P-wetherbeei_contig1390:8..227Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1390 9..227 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1390.1.1prot_P-wetherbeei_contig1390.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1390 9..227 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1390.1.1

>prot_P-wetherbeei_contig1390.1.1 ID=prot_P-wetherbeei_contig1390.1.1|Name=mRNA_P-wetherbeei_contig1390.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=73bp
GCLCRQVASVDSFQGREKDFIILTCVRSNEHQGIGFLSDPRRLNVALTRA
KYGVVLVGNPRILSKNPLWNALI
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mRNA from alignment at P-wetherbeei_contig1390:9..227+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1390.1.1 ID=mRNA_P-wetherbeei_contig1390.1.1|Name=mRNA_P-wetherbeei_contig1390.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=219bp|location=Sequence derived from alignment at P-wetherbeei_contig1390:9..227+ (Phaeothamnion wetherbeei SAG_119_79)
GGATGTCTCTGCCGGCAGGTGGCGAGCGTGGACAGCTTCCAGGGCCGCGA
GAAGGACTTCATCATTCTCACGTGCGTCCGCTCCAACGAGCACCAGGGCA
TCGGCTTCCTCTCGGACCCGCGCCGCCTCAATGTCGCCCTGACACGCGCC
AAGTACGGCGTTGTCCTCGTCGGTAACCCGCGCATCCTCTCGAAGAACCC
CCTCTGGAACGCGCTCATC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1390:9..227+

>mRNA_P-wetherbeei_contig1390.1.1 ID=mRNA_P-wetherbeei_contig1390.1.1|Name=mRNA_P-wetherbeei_contig1390.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=219bp|location=Sequence derived from alignment at P-wetherbeei_contig1390:9..227+ (Phaeothamnion wetherbeei SAG_119_79)
GGATGTCTCTGCCGGCAGGTGGCGAGCGTGGACAGCTTCCAGGGCCGCGA
GAAGGACTTCATCATTCTCACGTGCGTCCGCTCCAACGAGCACCAGGGCA
TCGGCTTCCTCTCGGACCCGCGCCGCCTCAATGTCGCCCTGACACGCGCC
AAGTACGGCGTTGTCCTCGTCGGTAACCCGCGCATCCTCTCGAAGAACCC
CCTCTGGAACGCGCTCATC
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