mRNA_P-wetherbeei_contig13897.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13897.2.1
Unique NamemRNA_P-wetherbeei_contig13897.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig13897.2.1 vs. uniprot
Match: A0A1F3ZYT1_9PROT (DUF4124 domain-containing protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_62_17 TaxID=1797484 RepID=A0A1F3ZYT1_9PROT)

HSP 1 Score: 87.0 bits (214), Expect = 1.120e-18
Identity = 56/113 (49.56%), Postives = 69/113 (61.06%), Query Frame = 1
Query:   64 AMPAAAEMYKWVDENGVVTYSNTPPPAAKQPKKVESVAERVSVYTPDAQLNSAMQSASHGDRR----KVASLEKELETERRARARAEQATRKEQDRKSAAYERCVAARGVDCD 390
            A P  A +YKWVD+NGV  YS  PP   K  KKV+SVA+R+SVYTPD  L  AM +      R    ++ SLE++LE ERRAR   + A   E+     AYERCVA R VDC+
Sbjct:   17 AAPTHAGVYKWVDQNGVTNYSGKPPADVKAVKKVDSVAQRLSVYTPDTALTLAMAAGPKVSERILSDRIDSLERQLEAERRAR---QVAAAAERQAAQTAYERCVAERRVDCN 126          
BLAST of mRNA_P-wetherbeei_contig13897.2.1 vs. uniprot
Match: A0A177QYL2_9PROT (DUF4124 domain-containing protein n=1 Tax=Betaproteobacteria bacterium SCGC AG-212-J23 TaxID=1799662 RepID=A0A177QYL2_9PROT)

HSP 1 Score: 57.0 bits (136), Expect = 1.080e-7
Identity = 28/47 (59.57%), Postives = 33/47 (70.21%), Query Frame = 1
Query:   73 AAAEMYKWVDENGVVTYSNTPPPAAKQPKKVESVAERVSVYTPDAQL 213
            A AE YKWVD+ GVV YSNTPPP A   K V+ +A+RVS Y PD  +
Sbjct:   19 ARAETYKWVDDKGVVNYSNTPPPGAA--KSVKPIADRVSTYEPDPSM 63          
BLAST of mRNA_P-wetherbeei_contig13897.2.1 vs. uniprot
Match: A0A0S8C296_9PROT (DUF4124 domain-containing protein n=1 Tax=Betaproteobacteria bacterium SG8_41 TaxID=1703391 RepID=A0A0S8C296_9PROT)

HSP 1 Score: 58.2 bits (139), Expect = 1.160e-7
Identity = 31/66 (46.97%), Postives = 41/66 (62.12%), Query Frame = 1
Query:   28 LRLALLAAALGTAMPAAAEMYKWVDENGVVTYSNTPPPAAKQPKKVESVAERVSVYTPDAQLNSAM 225
            +R  + AAA   A  A A++YKWVDENGV  YS+  P   K P+KV  V + +S+YTPD  L  A+
Sbjct:    7 IRFLMAAAAFFAASVAGAQIYKWVDENGVTNYSSQRPAGPKAPRKVGIVEDNISIYTPDPGLVEAV 72          
BLAST of mRNA_P-wetherbeei_contig13897.2.1 vs. uniprot
Match: A0A7J4ZUI6_9DELT (DUF4124 domain-containing protein n=1 Tax=Oryzomonas japonica TaxID=2603858 RepID=A0A7J4ZUI6_9DELT)

HSP 1 Score: 55.1 bits (131), Expect = 1.000e-6
Identity = 30/49 (61.22%), Postives = 40/49 (81.63%), Query Frame = 1
Query:   22 TVLRLALLAAALGTAMPAAAEMYKWVDENGVVTYSNTPPPAAKQPKKVE 168
            T L LAL+  +LG ++ A AEMYKWVDENGVVT+ +TPPPA+K+ +KV+
Sbjct:    3 TKLVLALIILSLGFSL-AGAEMYKWVDENGVVTFKDTPPPASKKRRKVK 50          
BLAST of mRNA_P-wetherbeei_contig13897.2.1 vs. uniprot
Match: A0A5C1MGG1_9DELT (DUF4124 domain-containing protein n=1 Tax=Geobacter sp. FeAm09 TaxID=2597769 RepID=A0A5C1MGG1_9DELT)

HSP 1 Score: 54.7 bits (130), Expect = 1.360e-6
Identity = 30/49 (61.22%), Postives = 40/49 (81.63%), Query Frame = 1
Query:   22 TVLRLALLAAALGTAMPAAAEMYKWVDENGVVTYSNTPPPAAKQPKKVE 168
            T L LAL+  +LG ++ A AEMYKWVDENGVVT+ +TPPPA+K+ +KV+
Sbjct:    3 TKLVLALVILSLGFSL-AGAEMYKWVDENGVVTFKDTPPPASKKRRKVK 50          
BLAST of mRNA_P-wetherbeei_contig13897.2.1 vs. uniprot
Match: A0A536TIV6_9PROT (DUF4124 domain-containing protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536TIV6_9PROT)

HSP 1 Score: 53.9 bits (128), Expect = 2.160e-6
Identity = 45/114 (39.47%), Postives = 58/114 (50.88%), Query Frame = 1
Query:   37 ALLAAALGTAMPAAAEMYKWVDENGVVTYSNTPPPAAKQPKKVESVAERVSVYTPDAQLNSAMQSASHGDRRKVASLEKELETERRARARAEQATRKEQDRKSAAYERCVAARG 378
            A+LA AL  A+PAAA +YKW DENG V Y +TPP   K        AERV+   P A  N+          R +AS + +++  ++ARA  E    K Q    A  ERC   RG
Sbjct:   10 AVLALALA-ALPAAAALYKWSDENGRVVYGDTPPAGVK--------AERVNAAVPPADPNAV---------RDMASKDAQIKARQQARAEDEVKAEKTQAEAKAKLERCAQVRG 105          
BLAST of mRNA_P-wetherbeei_contig13897.2.1 vs. uniprot
Match: UPI001CC67DD1 (DUF4124 domain-containing protein n=1 Tax=Geobacter sp. AOG1 TaxID=1566346 RepID=UPI001CC67DD1)

HSP 1 Score: 53.9 bits (128), Expect = 2.640e-6
Identity = 29/63 (46.03%), Postives = 42/63 (66.67%), Query Frame = 1
Query:   43 LAAALGTAMPAAAEMYKWVDENGVVTYSNTPPPAAKQPKKVESVAERVSVYTPDAQLNSAMQS 231
            +A  L T  P +AEMY+WV+ENGVVT+ +TPPP +K+ KKV++  +     TP +Q   A +S
Sbjct:    9 IAVLLLTFAPVSAEMYQWVEENGVVTFKDTPPPISKKRKKVKTYNDGDFAPTPPSQPEPAARS 71          
BLAST of mRNA_P-wetherbeei_contig13897.2.1 vs. uniprot
Match: A0A1F4FI02_9PROT (DUF4124 domain-containing protein n=2 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A1F4FI02_9PROT)

HSP 1 Score: 53.5 bits (127), Expect = 3.160e-6
Identity = 44/105 (41.90%), Postives = 52/105 (49.52%), Query Frame = 1
Query:   85 MYKWVDENGVVTYSNTPPPAAKQPKKVESVAERVSVYT--PDAQLNSAMQSASHGDRRKVASLEKELETERRARARAEQATRKEQDRKSAAYERCVAARGVDCDA 393
            MYKWVDE GVV YSN PP      KK+E + +RVSVY+  PD    +A   A                       RA  AT  E  R+  AYE+CV  RGVDC+A
Sbjct:    1 MYKWVDERGVVNYSNEPPKNVA--KKLELLPDRVSVYSTKPDVTATAAPVRAXXXXXXXXXXXXXXXXXXXXXXQRA-LATEDEAQRRRRAYEQCVLNRGVDCEA 102          
BLAST of mRNA_P-wetherbeei_contig13897.2.1 vs. uniprot
Match: A0A6S6LW91_9DELT (Glutaredoxin family protein n=3 Tax=Citrifermentans TaxID=2883512 RepID=A0A6S6LW91_9DELT)

HSP 1 Score: 52.8 bits (125), Expect = 7.040e-6
Identity = 23/33 (69.70%), Postives = 29/33 (87.88%), Query Frame = 1
Query:   70 PAAAEMYKWVDENGVVTYSNTPPPAAKQPKKVE 168
            PA AEMYKWVDE GVVT+ +TPPP++K+ KKV+
Sbjct:   17 PALAEMYKWVDEKGVVTFKDTPPPSSKKRKKVK 49          
BLAST of mRNA_P-wetherbeei_contig13897.2.1 vs. uniprot
Match: A0A536Y163_9PROT (DUF4124 domain-containing protein n=2 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536Y163_9PROT)

HSP 1 Score: 52.4 bits (124), Expect = 8.340e-6
Identity = 30/54 (55.56%), Postives = 35/54 (64.81%), Query Frame = 1
Query:   55 LGTAMPAA-AEMYKWVDENGVVTYSNTPPPAAKQPKKVESVAERVSVYTPDAQL 213
            L  A P A A+ YKWVDE GVV YSNTPPP A + + VE   ER+SVY  +  L
Sbjct:   24 LAAAAPLAQAQTYKWVDERGVVNYSNTPPPQAVKAQPVE---ERISVYASEPSL 74          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13897.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A1F3ZYT1_9PROT1.120e-1849.56DUF4124 domain-containing protein n=1 Tax=Betaprot... [more]
A0A177QYL2_9PROT1.080e-759.57DUF4124 domain-containing protein n=1 Tax=Betaprot... [more]
A0A0S8C296_9PROT1.160e-746.97DUF4124 domain-containing protein n=1 Tax=Betaprot... [more]
A0A7J4ZUI6_9DELT1.000e-661.22DUF4124 domain-containing protein n=1 Tax=Oryzomon... [more]
A0A5C1MGG1_9DELT1.360e-661.22DUF4124 domain-containing protein n=1 Tax=Geobacte... [more]
A0A536TIV6_9PROT2.160e-639.47DUF4124 domain-containing protein n=1 Tax=Betaprot... [more]
UPI001CC67DD12.640e-646.03DUF4124 domain-containing protein n=1 Tax=Geobacte... [more]
A0A1F4FI02_9PROT3.160e-641.90DUF4124 domain-containing protein n=2 Tax=unclassi... [more]
A0A6S6LW91_9DELT7.040e-669.70Glutaredoxin family protein n=3 Tax=Citrifermentan... [more]
A0A536Y163_9PROT8.340e-655.56DUF4124 domain-containing protein n=2 Tax=Betaprot... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13897contigP-wetherbeei_contig13897:1379..1774 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog243231.GSU0566
PFAMsDUF4124,Glutaredoxin
Model size396
Max annot lvl28221|Deltaproteobacteria
Hectar predicted targeting categorysignal peptide
Exons1
Evalue2.95e-06
EggNOG OGsCOG0695@1|root,COG0695@2|Bacteria,1NGUN@1224|Proteobacteria,42Y05@68525|delta/epsilon subdivisions,2WWBU@28221|Deltaproteobacteria,43VJ5@69541|Desulfuromonadales
DescriptionGlutaredoxin
Cds size396
COG categoryO
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186000.944553-CDS-P-wetherbeei_contig13897:1378..17741683186000.944553-CDS-P-wetherbeei_contig13897:1378..1774Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13897 1379..1774 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13897.2.1prot_P-wetherbeei_contig13897.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13897 1379..1774 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13897.2.1

>prot_P-wetherbeei_contig13897.2.1 ID=prot_P-wetherbeei_contig13897.2.1|Name=mRNA_P-wetherbeei_contig13897.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=132bp
LRTPVGTTVLRLALLAAALGTAMPAAAEMYKWVDENGVVTYSNTPPPAAK
QPKKVESVAERVSVYTPDAQLNSAMQSASHGDRRKVASLEKELETERRAR
ARAEQATRKEQDRKSAAYERCVAARGVDCDAV
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mRNA from alignment at P-wetherbeei_contig13897:1379..1774-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13897.2.1 ID=mRNA_P-wetherbeei_contig13897.2.1|Name=mRNA_P-wetherbeei_contig13897.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=396bp|location=Sequence derived from alignment at P-wetherbeei_contig13897:1379..1774- (Phaeothamnion wetherbeei SAG_119_79)
CTACGCACCCCGGTCGGCACAACGGTTCTCCGCCTCGCGCTCCTCGCCGC GGCGCTGGGGACCGCCATGCCCGCCGCCGCCGAGATGTACAAGTGGGTGG ACGAAAACGGCGTGGTCACCTACTCGAACACCCCGCCCCCGGCCGCGAAG CAGCCGAAAAAGGTCGAGTCCGTGGCCGAGCGCGTCTCGGTCTACACGCC CGACGCCCAGCTCAACAGCGCGATGCAGTCCGCGTCCCACGGCGACAGGA GGAAGGTCGCCTCGCTCGAGAAGGAACTCGAAACCGAGCGCCGCGCAAGA GCGCGCGCCGAGCAGGCTACGCGCAAGGAGCAGGACAGGAAGTCAGCAGC CTACGAGCGTTGCGTCGCTGCGCGCGGCGTGGACTGCGACGCGGTT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13897:1379..1774-

>mRNA_P-wetherbeei_contig13897.2.1 ID=mRNA_P-wetherbeei_contig13897.2.1|Name=mRNA_P-wetherbeei_contig13897.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=396bp|location=Sequence derived from alignment at P-wetherbeei_contig13897:1379..1774- (Phaeothamnion wetherbeei SAG_119_79)
CTACGCACCCCGGTCGGCACAACGGTTCTCCGCCTCGCGCTCCTCGCCGC
GGCGCTGGGGACCGCCATGCCCGCCGCCGCCGAGATGTACAAGTGGGTGG
ACGAAAACGGCGTGGTCACCTACTCGAACACCCCGCCCCCGGCCGCGAAG
CAGCCGAAAAAGGTCGAGTCCGTGGCCGAGCGCGTCTCGGTCTACACGCC
CGACGCCCAGCTCAACAGCGCGATGCAGTCCGCGTCCCACGGCGACAGGA
GGAAGGTCGCCTCGCTCGAGAAGGAACTCGAAACCGAGCGCCGCGCAAGA
GCGCGCGCCGAGCAGGCTACGCGCAAGGAGCAGGACAGGAAGTCAGCAGC
CTACGAGCGTTGCGTCGCTGCGCGCGGCGTGGACTGCGACGCGGTT
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