mRNA_P-wetherbeei_contig13894.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13894.1.1
Unique NamemRNA_P-wetherbeei_contig13894.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig13894.1.1 vs. uniprot
Match: A0A486XW26_9GAMM (Membrane fusion protein n=1 Tax=Rheinheimera sp. BAL341 TaxID=1708203 RepID=A0A486XW26_9GAMM)

HSP 1 Score: 53.1 bits (126), Expect = 5.070e-5
Identity = 47/164 (28.66%), Postives = 73/164 (44.51%), Query Frame = 1 
Query:    4 VDRVLVVIGQRVNAGEVIAQSDSSEIDREIGALREQSDRVQKQLESVRVETQSFNILQDQELVSRTIVTGLEGRLADLESSARALMGRIQDAENRLFRAVVRAPVTGTVIAAPPQVEGRPFRPGEVIVKIQA-----DPDRIVLEGDLSPALVAALRASPEARV 480
            V  V+V IG R+ AGEV+A  D       +   R ++ + Q  LE  +   +  N L+    VS+  + G        E+S R    RI+ AE  L +AV+RAP  G V         R   P E + + Q        +R+++E  +  +L   LR++ E  V
Sbjct:   89 VQDVIVDIGSRLKAGEVMAALDLEPYQLALYNARSEASKAQATLEESQANYERLNSLRSNNAVSQQDLEGSRTLFLTAEASLREANSRIRIAERELSQAVIRAPYDGVVST-------RQVNPFEEVAQTQIIFTFDSTERLIVESSVPVSLATELRSTNEQTV 245
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13894.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A486XW26_9GAMM5.070e-528.66Membrane fusion protein n=1 Tax=Rheinheimera sp. B... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13894contigP-wetherbeei_contig13894:231..773 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog743720.Psefu_3519
PFAMsBiotin_lipoyl_2,HlyD_3,HlyD_D23
Model size543
Max annot lvl1236|Gammaproteobacteria
KEGG koko:K18302
KEGG TC2.A.6.2,8.A.1
KEGG ModuleM00642
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.04e-05
EggNOG OGsCOG0845@1|root,COG0845@2|Bacteria,1NJDF@1224|Proteobacteria,1RSFR@1236|Gammaproteobacteria,1YY6E@136845|Pseudomonas putida group
DescriptionBelongs to the membrane fusion protein (MFP) (TC 8.A.1) family
Cds size543
COG categoryM
BRITEko00000,ko00002,ko01504,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186000.8019962-CDS-P-wetherbeei_contig13894:230..7731683186000.8019962-CDS-P-wetherbeei_contig13894:230..773Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13894 231..773 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13894.1.1prot_P-wetherbeei_contig13894.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13894 231..773 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13894.1.1

>prot_P-wetherbeei_contig13894.1.1 ID=prot_P-wetherbeei_contig13894.1.1|Name=mRNA_P-wetherbeei_contig13894.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=181bp
AVDRVLVVIGQRVNAGEVIAQSDSSEIDREIGALREQSDRVQKQLESVRV
ETQSFNILQDQELVSRTIVTGLEGRLADLESSARALMGRIQDAENRLFRA
VVRAPVTGTVIAAPPQVEGRPFRPGEVIVKIQADPDRIVLEGDLSPALVA
ALRASPEARVWLGPASLLHAQPLRVRLTWLA
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mRNA from alignment at P-wetherbeei_contig13894:231..773+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13894.1.1 ID=mRNA_P-wetherbeei_contig13894.1.1|Name=mRNA_P-wetherbeei_contig13894.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=543bp|location=Sequence derived from alignment at P-wetherbeei_contig13894:231..773+ (Phaeothamnion wetherbeei SAG_119_79)
GCCGTCGACCGGGTGCTCGTCGTCATCGGACAGCGGGTCAACGCGGGCGA
AGTCATCGCCCAGAGCGACAGCTCCGAAATCGACCGCGAAATCGGCGCGC
TTCGCGAACAGTCGGATCGCGTCCAGAAGCAACTCGAATCCGTGAGGGTC
GAGACGCAATCGTTCAATATCCTGCAGGATCAGGAACTCGTGTCGCGCAC
GATCGTCACCGGCCTCGAGGGCCGGCTGGCTGATCTGGAAAGCAGCGCAC
GCGCTCTGATGGGACGGATCCAGGACGCCGAGAACCGGCTATTTCGCGCC
GTCGTCAGGGCACCCGTCACAGGCACCGTCATCGCCGCGCCGCCGCAGGT
CGAGGGGCGGCCGTTCCGGCCGGGCGAGGTCATCGTGAAAATCCAGGCCG
ACCCCGACAGGATCGTTCTGGAAGGGGATTTGTCGCCCGCACTGGTCGCC
GCCTTGCGCGCCAGTCCCGAGGCTCGCGTCTGGCTCGGACCGGCATCGCT
GCTGCACGCCCAGCCGTTGCGCGTACGGCTGACGTGGCTCGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13894:231..773+

>mRNA_P-wetherbeei_contig13894.1.1 ID=mRNA_P-wetherbeei_contig13894.1.1|Name=mRNA_P-wetherbeei_contig13894.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=543bp|location=Sequence derived from alignment at P-wetherbeei_contig13894:231..773+ (Phaeothamnion wetherbeei SAG_119_79)
GCCGTCGACCGGGTGCTCGTCGTCATCGGACAGCGGGTCAACGCGGGCGA
AGTCATCGCCCAGAGCGACAGCTCCGAAATCGACCGCGAAATCGGCGCGC
TTCGCGAACAGTCGGATCGCGTCCAGAAGCAACTCGAATCCGTGAGGGTC
GAGACGCAATCGTTCAATATCCTGCAGGATCAGGAACTCGTGTCGCGCAC
GATCGTCACCGGCCTCGAGGGCCGGCTGGCTGATCTGGAAAGCAGCGCAC
GCGCTCTGATGGGACGGATCCAGGACGCCGAGAACCGGCTATTTCGCGCC
GTCGTCAGGGCACCCGTCACAGGCACCGTCATCGCCGCGCCGCCGCAGGT
CGAGGGGCGGCCGTTCCGGCCGGGCGAGGTCATCGTGAAAATCCAGGCCG
ACCCCGACAGGATCGTTCTGGAAGGGGATTTGTCGCCCGCACTGGTCGCC
GCCTTGCGCGCCAGTCCCGAGGCTCGCGTCTGGCTCGGACCGGCATCGCT
GCTGCACGCCCAGCCGTTGCGCGTACGGCTGACGTGGCTCGCC
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