mRNA_P-wetherbeei_contig13893.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13893.1.1
Unique NamemRNA_P-wetherbeei_contig13893.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig13893.1.1 vs. uniprot
Match: A0A7W5B2I5_9BACL (Uncharacterized protein n=1 Tax=Paenibacillus phyllosphaerae TaxID=274593 RepID=A0A7W5B2I5_9BACL)

HSP 1 Score: 111 bits (278), Expect = 4.370e-24
Identity = 88/342 (25.73%), Postives = 158/342 (46.20%), Query Frame = 1 
Query:   28 MSASAQIALFSLFIAVFQRTNFSKIIKGSLAMSLGGSVDLFKQLDPETRRKFVKANLAASLDDKT-GNAVFESVVGPLMGRTTSYRENFEYKVRALDAPPNEPASPTKALQSLIYALHDPKTYFWMHQSLQYDLRKAVNEEFEHYAGPFELWFAFDEKTLDAAVRNDEIYFREVLKLKETDLQTLTTLSADDLEAFLRTVMDLKVETRQAGQDLQCKFDVKVDRAAAPLLRVKIAKIS--GPRNSGLRISFNMPQLREATRFVVVLPQPTENPIIEFTRSQHMRNLQPVRFFSRLKPGALTELVDGEKVDETNPPKDPKSFNMQIDGWTFPTSGVMFVWDNR 1044
            M A   + +F++      RT+ SK+++ S+A +L    ++  Q   + R++F+K N A SL  K  G  ++ ++  P + ++ ++R NF+Y +         P    + L      L     Y W+ + L Y+ +  +  E E   G     F+++E+ L++  +N  I FRE L L E  +Q +  +    L  F+   M   +E    G  L+ K  +  +      L  + AK +  G  N  L+++F MPQ++   +F++V+ +PT    I F+      N+  V FF +       E+V+    D T          +Q+  W  PTSGV+FVW+ +
Sbjct:   54 MGAIIPLIIFNILFEYLMRTHQSKVVQESIAETLLMKEEVLTQFSEDNRKEFLK-NTAQSLVGKDEGEMLYSTLFVPYLSKSRNFRRNFKYYIFYT------PEDKMRDLDQGARDLFPASDYVWVIEDLSYE-KNVIRLEDELLVG-----FSYNEQQLESYFKNSRIVFRENLFLHEAQIQQMRAMEEAKLTEFVERSMQFAMEVN--GVKLKVKGVIHENGGFVLRLDAQEAKFAEDGSYNR-LKVNFRMPQMKAKKQFILVISEPTYGVDILFSNQLEQMNVSAVPFFDQ------DEIVESLPNDLTK---------IQLSSWVLPTSGVVFVWEEK 364
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13893.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7W5B2I5_9BACL4.370e-2425.73Uncharacterized protein n=1 Tax=Paenibacillus phyl... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13893contigP-wetherbeei_contig13893:142..1203 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1062
Hectar predicted targeting categoryother localisation
Exons1
Cds size1059
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186000.7672634-UTR-P-wetherbeei_contig13893:141..1441683186000.7672634-UTR-P-wetherbeei_contig13893:141..144Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig13893 142..144 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186000.7746556-CDS-P-wetherbeei_contig13893:144..12031683186000.7746556-CDS-P-wetherbeei_contig13893:144..1203Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13893 145..1203 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13893.1.1prot_P-wetherbeei_contig13893.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13893 145..1203 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13893.1.1

>prot_P-wetherbeei_contig13893.1.1 ID=prot_P-wetherbeei_contig13893.1.1|Name=mRNA_P-wetherbeei_contig13893.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=353bp
MKEVREVTMSASAQIALFSLFIAVFQRTNFSKIIKGSLAMSLGGSVDLFK
QLDPETRRKFVKANLAASLDDKTGNAVFESVVGPLMGRTTSYRENFEYKV
RALDAPPNEPASPTKALQSLIYALHDPKTYFWMHQSLQYDLRKAVNEEFE
HYAGPFELWFAFDEKTLDAAVRNDEIYFREVLKLKETDLQTLTTLSADDL
EAFLRTVMDLKVETRQAGQDLQCKFDVKVDRAAAPLLRVKIAKISGPRNS
GLRISFNMPQLREATRFVVVLPQPTENPIIEFTRSQHMRNLQPVRFFSRL
KPGALTELVDGEKVDETNPPKDPKSFNMQIDGWTFPTSGVMFVWDNRPPL
SA*
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mRNA from alignment at P-wetherbeei_contig13893:142..1203+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13893.1.1 ID=mRNA_P-wetherbeei_contig13893.1.1|Name=mRNA_P-wetherbeei_contig13893.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1062bp|location=Sequence derived from alignment at P-wetherbeei_contig13893:142..1203+ (Phaeothamnion wetherbeei SAG_119_79)
ATCATGAAGGAAGTGCGTGAAGTCACGATGTCAGCAAGCGCACAGATCGC
GCTTTTCAGCCTTTTCATCGCCGTCTTCCAGCGCACCAATTTCAGCAAGA
TCATCAAAGGATCGCTTGCGATGAGCCTTGGCGGCAGCGTCGATCTGTTC
AAGCAGCTCGATCCAGAGACCAGGCGGAAATTTGTGAAAGCCAATCTTGC
GGCATCGCTCGACGACAAGACAGGCAATGCAGTGTTCGAGAGCGTGGTAG
GACCACTGATGGGCCGGACAACGTCGTACCGGGAGAATTTCGAATACAAG
GTGAGAGCGCTCGACGCACCTCCCAACGAGCCAGCTTCGCCGACAAAAGC
GCTGCAGTCCCTTATCTATGCGCTTCACGATCCGAAGACCTACTTCTGGA
TGCACCAGAGCCTCCAGTACGATCTTCGCAAGGCCGTGAACGAGGAATTC
GAACACTATGCCGGGCCGTTCGAACTCTGGTTCGCCTTTGACGAAAAGAC
GCTTGATGCAGCAGTCCGGAATGACGAAATCTATTTTCGCGAAGTGCTGA
AGCTGAAGGAAACCGATCTCCAGACGTTGACCACGCTCTCCGCTGACGAC
CTCGAAGCGTTTCTGAGGACGGTGATGGATCTCAAGGTTGAAACGCGACA
GGCTGGGCAAGACCTGCAATGCAAGTTCGACGTCAAGGTCGATCGGGCGG
CAGCGCCGTTGCTCCGTGTCAAGATTGCCAAGATCAGCGGCCCCAGGAAC
AGCGGACTGAGGATCAGCTTCAACATGCCTCAATTGCGGGAGGCGACGCG
TTTCGTCGTCGTCCTGCCGCAGCCAACCGAGAATCCAATCATAGAATTCA
CGCGGTCGCAGCACATGAGGAACCTACAGCCGGTGCGCTTTTTCTCGCGG
CTGAAGCCGGGGGCGCTCACCGAGCTGGTCGACGGCGAGAAGGTGGACGA
AACGAATCCACCAAAAGATCCGAAGTCTTTCAACATGCAGATAGACGGAT
GGACCTTCCCGACGTCAGGCGTGATGTTCGTCTGGGACAATCGTCCCCCG
CTCAGCGCTTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13893:142..1203+

>mRNA_P-wetherbeei_contig13893.1.1 ID=mRNA_P-wetherbeei_contig13893.1.1|Name=mRNA_P-wetherbeei_contig13893.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1059bp|location=Sequence derived from alignment at P-wetherbeei_contig13893:142..1203+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGGAAGTGCGTGAAGTCACGATGTCAGCAAGCGCACAGATCGCGCT
TTTCAGCCTTTTCATCGCCGTCTTCCAGCGCACCAATTTCAGCAAGATCA
TCAAAGGATCGCTTGCGATGAGCCTTGGCGGCAGCGTCGATCTGTTCAAG
CAGCTCGATCCAGAGACCAGGCGGAAATTTGTGAAAGCCAATCTTGCGGC
ATCGCTCGACGACAAGACAGGCAATGCAGTGTTCGAGAGCGTGGTAGGAC
CACTGATGGGCCGGACAACGTCGTACCGGGAGAATTTCGAATACAAGGTG
AGAGCGCTCGACGCACCTCCCAACGAGCCAGCTTCGCCGACAAAAGCGCT
GCAGTCCCTTATCTATGCGCTTCACGATCCGAAGACCTACTTCTGGATGC
ACCAGAGCCTCCAGTACGATCTTCGCAAGGCCGTGAACGAGGAATTCGAA
CACTATGCCGGGCCGTTCGAACTCTGGTTCGCCTTTGACGAAAAGACGCT
TGATGCAGCAGTCCGGAATGACGAAATCTATTTTCGCGAAGTGCTGAAGC
TGAAGGAAACCGATCTCCAGACGTTGACCACGCTCTCCGCTGACGACCTC
GAAGCGTTTCTGAGGACGGTGATGGATCTCAAGGTTGAAACGCGACAGGC
TGGGCAAGACCTGCAATGCAAGTTCGACGTCAAGGTCGATCGGGCGGCAG
CGCCGTTGCTCCGTGTCAAGATTGCCAAGATCAGCGGCCCCAGGAACAGC
GGACTGAGGATCAGCTTCAACATGCCTCAATTGCGGGAGGCGACGCGTTT
CGTCGTCGTCCTGCCGCAGCCAACCGAGAATCCAATCATAGAATTCACGC
GGTCGCAGCACATGAGGAACCTACAGCCGGTGCGCTTTTTCTCGCGGCTG
AAGCCGGGGGCGCTCACCGAGCTGGTCGACGGCGAGAAGGTGGACGAAAC
GAATCCACCAAAAGATCCGAAGTCTTTCAACATGCAGATAGACGGATGGA
CCTTCCCGACGTCAGGCGTGATGTTCGTCTGGGACAATCGTCCCCCGCTC
AGCGCTTGA
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