mRNA_P-wetherbeei_contig13884.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13884.1.1
Unique NamemRNA_P-wetherbeei_contig13884.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig13884.1.1 vs. uniprot
Match: UPI001D0CA0FE (pre-peptidase C-terminal domain-containing protein n=1 Tax=Cognatishimia sp. F0-27 TaxID=2816855 RepID=UPI001D0CA0FE)

HSP 1 Score: 86.3 bits (212), Expect = 1.790e-17
Identity = 41/78 (52.56%), Postives = 57/78 (73.08%), Query Frame = 1
Query:    4 QYQQLAQDTASALLIENNYGPGTACSHWDEEQLKGELMTGVAQPESPRMPLSVITIGAMADLGYAVDYGAADPFTLPS 237
            +Y  L   TA+A+ +E + GPGTA  HWDE+    ELMTG+++  SP MPLS +TIG++ D+GY V+Y AADP++LPS
Sbjct: 1246 EYSALITGTATAVPVEEDGGPGTAGGHWDEDLFDRELMTGISE-NSPPMPLSRMTIGSLEDMGYQVNYTAADPYSLPS 1322          
BLAST of mRNA_P-wetherbeei_contig13884.1.1 vs. uniprot
Match: A0A511N8C6_9DEIO (Uncharacterized protein n=2 Tax=Deinococcus cellulosilyticus TaxID=401558 RepID=A0A511N8C6_9DEIO)

HSP 1 Score: 84.0 bits (206), Expect = 2.400e-17
Identity = 42/82 (51.22%), Postives = 53/82 (64.63%), Query Frame = 1
Query:    1 RQYQQLAQDTASALLIENNYGPGTACSHWDEEQLKGELMTGVAQPESPRMPLSVITIGAMADLGYAVDYGAADPFTLPSDAV 246
            +Q+ QL +     + +EN YG G  C HWDEE  K ELMTG +   S  MPLS +TIGA+ DLGY V+Y AADP++LP   V
Sbjct:  165 QQFHQLGEQ--GLIPVENQYGAGNKCGHWDEETFKSELMTGFST--SNPMPLSKMTIGALQDLGYRVNYNAADPYSLPFSGV 242          
BLAST of mRNA_P-wetherbeei_contig13884.1.1 vs. uniprot
Match: UPI001FE13D3E (leishmanolysin n=1 Tax=Deinococcus misasensis TaxID=392413 RepID=UPI001FE13D3E)

HSP 1 Score: 84.0 bits (206), Expect = 2.610e-17
Identity = 49/96 (51.04%), Postives = 59/96 (61.46%), Query Frame = 1
Query:   46 IENNYGPGTACSHWDEEQLKGELMTGVAQPESPRMPLSVITIGAMADLGYAVDYGAADPFTLPSDAVDLGQT------EKMTSPAVLSPVVSSSSL 315
            +EN YG GT C HWDEE  K ELMTG +   S  MPLS +T+GA+ DLGY V+  AADP+TLP   V  GQ       E +T P VL P  + SS+
Sbjct:  186 VENQYGAGTKCGHWDEETFKSELMTGFST--SNPMPLSKLTLGALQDLGYEVNLQAADPYTLPQSEVS-GQRAGFELLEILTVPRVLKPGETPSSI 278          
BLAST of mRNA_P-wetherbeei_contig13884.1.1 vs. uniprot
Match: Q1IXS4_DEIGD (Metalloendopeptidase M8 containing Ig-like domains n=3 Tax=Deinococcus TaxID=1298 RepID=Q1IXS4_DEIGD)

HSP 1 Score: 85.1 bits (209), Expect = 3.750e-17
Identity = 46/90 (51.11%), Postives = 61/90 (67.78%), Query Frame = 1
Query:    1 RQYQQLAQDTASALLIENNYGPGTACSHWDEEQLKGELMTGVAQPESPRMPLSVITIGAMADLGYAVDYGAADPFTLPS-DAVDLGQTEK 267
            R+Y+ L    A+ + +EN YG GT C+HW E   + ELMTG A    P MPLS +T+GA+ADLGY+V+Y AADP+T+P+  A  LGQ  K
Sbjct:  364 REYRNLG-GLAAGVPVENQYGEGTKCAHWKESVFQSELMTGFAS-RGP-MPLSRLTLGALADLGYSVNYAAADPYTIPNVGAQSLGQEIK 450          
BLAST of mRNA_P-wetherbeei_contig13884.1.1 vs. uniprot
Match: A0A4P5WZA4_9BACT (Uncharacterized protein n=1 Tax=Planctomycetia bacterium TaxID=2052181 RepID=A0A4P5WZA4_9BACT)

HSP 1 Score: 84.7 bits (208), Expect = 5.860e-17
Identity = 40/78 (51.28%), Postives = 53/78 (67.95%), Query Frame = 1
Query:    1 RQYQQLAQDTASALLIENNYGPGTACSHWDEEQLKGELMTGVAQPESPRMPLSVITIGAMADLGYAVDYGAADPFTLP 234
            R+Y  +   T +++ +EN  GPGT  SHW E  ++ ELMTG A P    MPLS IT+G +ADLGYAV+YGAAD ++ P
Sbjct:  407 REYNAIFGVTGTSVPVENTGGPGTRDSHWRESTMQTELMTGYASPSGVAMPLSRITVGGLADLGYAVNYGAADLYSRP 484          
BLAST of mRNA_P-wetherbeei_contig13884.1.1 vs. uniprot
Match: UPI00068F8AED (Ig-like domain-containing protein n=1 Tax=Deinococcus sp. YIM 77859 TaxID=1540221 RepID=UPI00068F8AED)

HSP 1 Score: 83.2 bits (204), Expect = 1.840e-16
Identity = 42/88 (47.73%), Postives = 58/88 (65.91%), Query Frame = 1
Query:    1 RQYQQLAQDTASALLIENNYGPGTACSHWDEEQLKGELMTGVAQPESPRMPLSVITIGAMADLGYAVDYGAADPFTLPSDAVDLGQTE 264
            R+Y+ L    A+ + +E+ YG GT C HW E   + ELMTG AQ  +  MPLS +T+GA+ADLGY+V+YGAAD +++P  A   G  E
Sbjct:  369 REYRNLGGQ-AAGVPVEDGYGTGTKCGHWKESVFQSELMTGFAQRGT--MPLSRMTLGALADLGYSVNYGAADTYSIPQTAAQEGGME 453          
BLAST of mRNA_P-wetherbeei_contig13884.1.1 vs. uniprot
Match: UPI0016657995 (peptidase n=1 Tax=Deinococcus roseus TaxID=392414 RepID=UPI0016657995)

HSP 1 Score: 80.9 bits (198), Expect = 4.280e-16
Identity = 41/78 (52.56%), Postives = 51/78 (65.38%), Query Frame = 1
Query:    1 RQYQQLAQDTASALLIENNYGPGTACSHWDEEQLKGELMTGVAQPESPRMPLSVITIGAMADLGYAVDYGAADPFTLP 234
            +Q+ QL +  A  + +EN YG G  C HWDEE  K ELMTG +   S  MPLS +TIGA+ DLGY V+YG AD + LP
Sbjct:  177 QQFHQLGE--AGFIPVENQYGAGNKCGHWDEETFKTELMTGFST--SNPMPLSKMTIGALEDLGYQVNYGVADTYALP 250          
BLAST of mRNA_P-wetherbeei_contig13884.1.1 vs. uniprot
Match: A0A7W8I689_9DEIO (BIG2 domain-containing protein n=1 Tax=Deinococcus metallilatus TaxID=1211322 RepID=A0A7W8I689_9DEIO)

HSP 1 Score: 81.3 bits (199), Expect = 6.430e-16
Identity = 40/79 (50.63%), Postives = 53/79 (67.09%), Query Frame = 1
Query:    1 RQYQQLAQDTASALLIENNYGPGTACSHWDEEQLKGELMTGVAQPESPRMPLSVITIGAMADLGYAVDYGAADPFTLPS 237
            R+Y+ L    A+ + +E+ YG GT CSHW E   + ELMTG        MPLS IT+GA+ADLGY V+Y AADP+T+P+
Sbjct:  276 REYRNLGGQ-AAGVPVEDQYGEGTQCSHWKESVFQRELMTGFTSRSG--MPLSRITLGALADLGYTVNYAAADPYTIPN 351          
BLAST of mRNA_P-wetherbeei_contig13884.1.1 vs. uniprot
Match: A0A3R9M395_9RHOB (Uncharacterized protein n=1 Tax=Rhodovulum robiginosum TaxID=68292 RepID=A0A3R9M395_9RHOB)

HSP 1 Score: 81.3 bits (199), Expect = 1.020e-15
Identity = 41/76 (53.95%), Postives = 50/76 (65.79%), Query Frame = 1
Query:    4 QYQQLAQDTASALLIENNYGPGTACSHWDEEQLKGELMTGVAQPESPRMPLSVITIGAMADLGYAVDYGAADPFTL 231
            +Y  L   T S + +E   GPGTA SHW E     ELMTG A+  SP MPLS +T+G + DLGYAVDYGAA+ +TL
Sbjct: 1245 EYATLTGTTQSTVPLETTGGPGTAGSHWSEAIFTNELMTGYAE-NSPPMPLSRLTVGGLEDLGYAVDYGAAEAYTL 1319          
BLAST of mRNA_P-wetherbeei_contig13884.1.1 vs. uniprot
Match: A0A1W1VL65_9DEIO (Bacterial surface proteins containing Ig-like domains n=1 Tax=Deinococcus hopiensis KR-140 TaxID=695939 RepID=A0A1W1VL65_9DEIO)

HSP 1 Score: 80.9 bits (198), Expect = 1.310e-15
Identity = 38/69 (55.07%), Postives = 49/69 (71.01%), Query Frame = 1
Query:   31 ASALLIENNYGPGTACSHWDEEQLKGELMTGVAQPESPRMPLSVITIGAMADLGYAVDYGAADPFTLPS 237
            A+ + +E+ YG GT C HW E   + ELMTG A   S  MPLS IT+GA+ADLGY+V+Y AAD +T+PS
Sbjct:  482 AAGVPVEDQYGEGTKCGHWKESVFQNELMTGFANKGS--MPLSRITLGALADLGYSVNYAAADAYTIPS 548          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13884.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001D0CA0FE1.790e-1752.56pre-peptidase C-terminal domain-containing protein... [more]
A0A511N8C6_9DEIO2.400e-1751.22Uncharacterized protein n=2 Tax=Deinococcus cellul... [more]
UPI001FE13D3E2.610e-1751.04leishmanolysin n=1 Tax=Deinococcus misasensis TaxI... [more]
Q1IXS4_DEIGD3.750e-1751.11Metalloendopeptidase M8 containing Ig-like domains... [more]
A0A4P5WZA4_9BACT5.860e-1751.28Uncharacterized protein n=1 Tax=Planctomycetia bac... [more]
UPI00068F8AED1.840e-1647.73Ig-like domain-containing protein n=1 Tax=Deinococ... [more]
UPI00166579954.280e-1652.56peptidase n=1 Tax=Deinococcus roseus TaxID=392414 ... [more]
A0A7W8I689_9DEIO6.430e-1650.63BIG2 domain-containing protein n=1 Tax=Deinococcus... [more]
A0A3R9M395_9RHOB1.020e-1553.95Uncharacterized protein n=1 Tax=Rhodovulum robigin... [more]
A0A1W1VL65_9DEIO1.310e-1555.07Bacterial surface proteins containing Ig-like doma... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13884contigP-wetherbeei_contig13884:58..674 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog319795.Dgeo_1665
PFAMsBig_2,Big_3_5,DUF3616,F5_F8_type_C,Peptidase_M8,Polysacc_lyase
Model size315
Max annot lvl2|Bacteria
KEGG koko:K07004
Hectar predicted targeting categoryother localisation
Exons2
Evalue6.15e-18
EggNOG OGsCOG3291@1|root,COG5492@1|root,COG3291@2|Bacteria,COG5492@2|Bacteria
Descriptiondomain, Protein
Cds size315
COG categoryN
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186000.3913202-CDS-P-wetherbeei_contig13884:57..1431683186000.3913202-CDS-P-wetherbeei_contig13884:57..143Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13884 58..143 +
1683186000.4023933-CDS-P-wetherbeei_contig13884:445..6741683186000.4023933-CDS-P-wetherbeei_contig13884:445..674Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13884 446..674 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13884.1.1prot_P-wetherbeei_contig13884.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13884 58..674 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13884.1.1

>prot_P-wetherbeei_contig13884.1.1 ID=prot_P-wetherbeei_contig13884.1.1|Name=mRNA_P-wetherbeei_contig13884.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=105bp
RQYQQLAQDTASALLIENNYGPGTACSHWDEEQLKGELMTGVAQPESPRM
PLSVITIGAMADLGYAVDYGAADPFTLPSDAVDLGQTEKMTSPAVLSPVV
SSSSL
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mRNA from alignment at P-wetherbeei_contig13884:58..674+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13884.1.1 ID=mRNA_P-wetherbeei_contig13884.1.1|Name=mRNA_P-wetherbeei_contig13884.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=617bp|location=Sequence derived from alignment at P-wetherbeei_contig13884:58..674+ (Phaeothamnion wetherbeei SAG_119_79)
CGACAGTACCAGCAGCTTGCCCAGGACACGGCGTCGGCGCTGCTCATCGA GAACAACTACGGCCCCGGCACCGCATGTAGCCATTGGTGCGTCCTCAGTT TGTATTTTGGAAGCGGTTTAGTTTGACGGCGGTGGTGGCGTCTCAACCCC CGCAAAACATAGAAGTTGTGTGGGGCGATCTTTGAACTACGGGCAGCCGA GTGGGCGGCAATCACTGCTGTACATGCGATAATGATTCTTGTAACAATAA TTAAAGCCTGTACGCTGCGCAACGCGCCTGCTTCGCTCGTACCTCAATGC TCTGACCTGACAAACACGCCAATTTTGCGTCGCCGCGGCTACCCCTCCCT CCCGGCGGCTCTTCCCTTGCCGAATTCGGTCTGCGCAGGGACGAGGAGCA GCTGAAGGGAGAGCTGATGACGGGTGTTGCTCAGCCGGAATCCCCCCGCA TGCCGCTGAGCGTCATCACCATCGGTGCTATGGCGGACCTTGGGTACGCG GTGGACTACGGGGCGGCGGACCCCTTCACGCTGCCGTCGGACGCGGTTGA CCTCGGCCAGACGGAAAAGATGACGTCGCCCGCCGTGTTGAGTCCGGTGG TATCGTCGTCGTCGCTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13884:58..674+

>mRNA_P-wetherbeei_contig13884.1.1 ID=mRNA_P-wetherbeei_contig13884.1.1|Name=mRNA_P-wetherbeei_contig13884.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=315bp|location=Sequence derived from alignment at P-wetherbeei_contig13884:58..674+ (Phaeothamnion wetherbeei SAG_119_79)
CGACAGTACCAGCAGCTTGCCCAGGACACGGCGTCGGCGCTGCTCATCGA
GAACAACTACGGCCCCGGCACCGCATGTAGCCATTGGGACGAGGAGCAGC
TGAAGGGAGAGCTGATGACGGGTGTTGCTCAGCCGGAATCCCCCCGCATG
CCGCTGAGCGTCATCACCATCGGTGCTATGGCGGACCTTGGGTACGCGGT
GGACTACGGGGCGGCGGACCCCTTCACGCTGCCGTCGGACGCGGTTGACC
TCGGCCAGACGGAAAAGATGACGTCGCCCGCCGTGTTGAGTCCGGTGGTA
TCGTCGTCGTCGCTG
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