mRNA_P-wetherbeei_contig13874.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13874.1.1
Unique NamemRNA_P-wetherbeei_contig13874.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig13874.1.1 vs. uniprot
Match: A0A836CLM4_9STRA (Cysteine desulfuration protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLM4_9STRA)

HSP 1 Score: 168 bits (425), Expect = 7.660e-49
Identity = 102/162 (62.96%), Postives = 122/162 (75.31%), Query Frame = 1
Query:    1 LSGCSPQDIQRVKPEFIQASGLQTSLTPGRNNGFINMLATMKRKALEAEXXXXXXXXXXX--------------------EAGEGPVTAALLQKLKALNPMRLEVEDESGNEQKFYIAIVAEGFAGLPLLKRHQMVYALIAEEMAVVHAVSLSTKTPAEVGM 426
            LSG +  DIQ VKPEFIQ +GLQTSLTPGRNNGFINML+TMKRKAL+AEXXXXXXXXXXX                    E    P+T A+++KL+AL P+RL+VEDES +EQKFYIA+V+  F GLPL+KRHQ+V+  IA+EM  VHAV LSTKTPAE+G+
Sbjct:  157 LSGNAAADIQSVKPEFIQVAGLQTSLTPGRNNGFINMLSTMKRKALQAEXXXXXXXXXXXXXXXXXXXXADSEGDDMGVAEVPGKPMTTAIMRKLQALRPVRLQVEDESEDEQKFYIAVVSSAFEGLPLVKRHQLVHLTIADEMKQVHAVQLSTKTPAEMGL 318          
BLAST of mRNA_P-wetherbeei_contig13874.1.1 vs. uniprot
Match: A0A6H5KD56_9PHAE (SufE domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KD56_9PHAE)

HSP 1 Score: 140 bits (353), Expect = 4.630e-38
Identity = 81/155 (52.26%), Postives = 100/155 (64.52%), Query Frame = 1
Query:    1 LSGCSPQDIQRVKPEFIQASGLQTSLTPGRNNGFINMLATMKRKALEA-----------EXXXXXXXXXXXEAGE-GPVTAALLQKLKALNPMRLEVEDESGNEQ-KFYIAIVAEGFAGLPLLKRHQMVYALIAEEMAVVHAVSLSTKTPAEVGM 426
            LSG SP+ IQ VKPEFIQ +GLQ SL  GRNNGFINML TMK KAL             +           EA E G + + + +KL+ L P++L +EDESG E+ KF I IV++ F GL LLKRH+ VY L+A+EM +VHAV+L TKTP E GM
Sbjct:  165 LSGNSPEAIQTVKPEFIQVAGLQASLAAGRNNGFINMLRTMKGKALALGGESAIRAAMEQAAPAAETAAPEEAEESGTMASRVTEKLQKLEPLKLVIEDESGGEESKFMIKIVSKSFEGLTLLKRHRSVYGLMADEMKIVHAVTLDTKTPEEAGM 319          
BLAST of mRNA_P-wetherbeei_contig13874.1.1 vs. uniprot
Match: A0A4D9DCV6_9STRA (SufE domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DCV6_9STRA)

HSP 1 Score: 127 bits (319), Expect = 4.320e-33
Identity = 72/159 (45.28%), Postives = 99/159 (62.26%), Query Frame = 1
Query:    1 LSGCSPQDIQRVKPEFIQASGLQTSLTPGRNNGFINMLATMKRKALEAEXXXXXXXXXXX-----EAGEGPVTAALLQKL-KALNPMRLEVEDES------------GNEQKFYIAIVAEGFAGLPLLKRHQMVYALIAEEMAVVHAVSLSTKTPAEVG 423
            +SGCS ++IQ VKPEFI+ +G+  SLTPGRNNGF+NMLA +KRKA+EAE                E    PV ++ ++KL   L P RLE++D+S            G E  F + IVA+ F GL L++RH++VY ++A EM  +HA+S+  KTPAE G
Sbjct:  152 MSGCSAEEIQAVKPEFIKYAGIAASLTPGRNNGFLNMLAMLKRKAVEAESKGEGAGQEEPAVEFQEDIARPVYSSCMKKLINFLKPKRLEMQDDSAQHAGHAGAKGLGGESHFSLRIVADCFEGLSLVQRHKLVYTVLAAEMQQIHALSIDAKTPAEAG 310          
BLAST of mRNA_P-wetherbeei_contig13874.1.1 vs. uniprot
Match: M2XAG5_GALSU (Cysteine desulfuration protein SufE (Plastid) n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XAG5_GALSU)

HSP 1 Score: 121 bits (304), Expect = 1.010e-30
Identity = 66/170 (38.82%), Postives = 96/170 (56.47%), Query Frame = 1
Query:    1 LSGCSPQDIQRVKPEFIQASGLQTSLTPGRNNGFINMLATMKRKALEA----------------EXXXXXXXXXXXEAGEGPVTAALLQKLKALNPMRLEVEDES-------------GNEQKFYIAIVAEGFAGLPLLKRHQMVYALIAEEMAV-VHAVSLSTKTPAEV 420
            L+GC+ ++I+R+ PEF+  +GL  SLTPGRNNGF+NML TMK KA EA                            E   GP+ +A+++KL+ L P RLEV D+S              +E  F + +V++ F GL L+KRHQ+VY L+ +E+   +HA+ +  KTP+EV
Sbjct:  155 LNGCTVEEIERISPEFVTVAGLSVSLTPGRNNGFLNMLQTMKNKAKEAASKLNGVSREGRNYSDRVPKTQASPSTAETASGPIYSAIVEKLQKLKPSRLEVHDDSFQHAGHVGAKGLRSSETHFSVYVVSDAFVGLSLVKRHQLVYTLLGQELKEGLHALRIQAKTPSEV 324          
BLAST of mRNA_P-wetherbeei_contig13874.1.1 vs. uniprot
Match: A0A7S1U3X6_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U3X6_9STRA)

HSP 1 Score: 112 bits (280), Expect = 1.130e-27
Identity = 70/167 (41.92%), Postives = 92/167 (55.09%), Query Frame = 1
Query:    1 LSGCSPQDIQRVKPEFIQASGLQTSLTPGRNNGFINMLATMKRKA------------------LEAEXXXXXXXXXXXEAGEGPVTAALLQK-LKALNPMRLEVEDES------GNEQKFYIAIVAEGFAGLPLLKRHQMVYALIAEEMAVVHAVSLSTKTPAEVGM 426
            LSG SP DIQ V+PEFIQ +GL TSLTPGRNNGFINMLA MK++A                     E           E  + P   +L++K + A  P+ + +ED +        E  F + +++  F GLPL+KR Q VYALI+EEM  +HA  + TKTP E G+
Sbjct:  103 LSGFSPSDIQGVQPEFIQYAGLGTSLTPGRNNGFINMLAKMKQQAELLGEGKPLSEASAADDAASEEEDALPVITTFEEKEDKPRYNSLMRKVIDAFAPVEIRLEDTTHMHANQAPESHFRLTLISSKFDGLPLVKRQQAVYALISEEMDDIHAFQMYTKTPEEEGL 269          
BLAST of mRNA_P-wetherbeei_contig13874.1.1 vs. uniprot
Match: A0A1Z5K9T0_FISSO (SufE domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K9T0_FISSO)

HSP 1 Score: 111 bits (278), Expect = 2.240e-27
Identity = 68/155 (43.87%), Postives = 90/155 (58.06%), Query Frame = 1
Query:    1 LSGCSPQDIQRVKPEFIQASGLQTSLTPGRNNGFINMLATMKRKALEAEXXXXXXXXXXXE---AG-EGPVTAALLQKLKALNPMRLEVEDES-----------GNEQKFYIAIVAEGFAGLPLLKRHQMVYALIAEEMAVVHAVSLSTKTPAEV 420
            LSG + +DIQ V P FIQ +G+  SLTPGRNNGF+NML  MK KA + E               AG E P+  A++Q L+AL P+ L++ED S             E  F + IVA  F GL L+KRH++VY L+ + M  +HA+ +S KTP EV
Sbjct:  114 LSGNTAEDIQNVDPGFIQKTGIAASLTPGRNNGFLNMLNVMKIKAKQLEANYQATGPSESATTTAGDEKPMYQAIVQGLQALKPVSLKLEDVSYQHAGHREASKDGETHFNLEIVASAFEGLNLVKRHKLVYMLLGDVMPRIHALQISAKTPEEV 268          
BLAST of mRNA_P-wetherbeei_contig13874.1.1 vs. uniprot
Match: A0A7S3Q629_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q629_9STRA)

HSP 1 Score: 110 bits (276), Expect = 1.120e-26
Identity = 62/166 (37.35%), Postives = 92/166 (55.42%), Query Frame = 1
Query:    1 LSGCSPQDIQRVKPEFIQASGLQTSLTPGRNNGFINMLATMKRKAL------------EAEXXXXXXXXXXXEAGEGPVTAALLQKLKALNPMRLEVEDESGN--------------EQKFYIAIVAEGFAGLPLLKRHQMVYALIAEEMAVVHAVSLSTKTPAEV 420
            +SGC+ + IQ+V PEFI A+ +  SLTPGRNNGF+NMLA MK KA             EA+           E    P+   +++ L  L P+ LE+ D+S +              E  F + +VAE F G+PL+KRHQ++Y ++ E M  +HA+S++ K P++V
Sbjct:  151 MSGCTAEQIQKVDPEFINAAKITQSLTPGRNNGFLNMLAVMKAKATSYSVGADNSGGEEADADTEGVISSFDEIAGKPMYNDMMESLLKLKPVTLELIDDSASHAGHAGSKGWEESGESHFVLNMVAEVFDGMPLVKRHQLIYLVLGETMDKIHALSINAKAPSQV 316          
BLAST of mRNA_P-wetherbeei_contig13874.1.1 vs. uniprot
Match: A0A7S2XMD5_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XMD5_9STRA)

HSP 1 Score: 108 bits (271), Expect = 6.590e-26
Identity = 71/171 (41.52%), Postives = 94/171 (54.97%), Query Frame = 1
Query:    1 LSGCSPQDIQRVKPEFIQASGLQTSLTPGRNNGFINMLATMKRKALEAEXXXXXXXXXXX-----------EAG----EG-PVTAALLQKLKA-LNPMRLEVEDES-------GN-------EQKFYIAIVAEGFAGLPLLKRHQMVYALIAEEMAVVHAVSLSTKTPAEV 420
            LSGC+ ++I +V PEFI A+ +  SLTPGRNNGF+NMLA MKRKA EAE                      E G    EG P+  A++ +L + L P  + + D S       GN       E  F + IVAE F GL L+KRHQ++Y L+ EEM  +HA+ +  +TP EV
Sbjct:  151 LSGCTAEEISKVNPEFINAAKISQSLTPGRNNGFLNMLAVMKRKAAEAERVEVSADEESTNGEVAPEEEDEEVGFEKIEGKPMYNAIMSRLVSILKPTDIALVDNSHQHAGHAGNKGWEESGESHFSLDIVAEAFDGLNLVKRHQLIYMLLGEEMPKIHALQIMARTPQEV 321          
BLAST of mRNA_P-wetherbeei_contig13874.1.1 vs. uniprot
Match: A0A7S1GMQ2_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GMQ2_CYCTE)

HSP 1 Score: 107 bits (268), Expect = 7.670e-26
Identity = 63/157 (40.13%), Postives = 84/157 (53.50%), Query Frame = 1
Query:    1 LSGCSPQDIQRVKPEFIQASGLQTSLTPGRNNGFINMLATMKRKALEAEXXXXXXXXXXXEAGEG------PVTAALLQKLKALNPMRLEVEDESGN------------EQKFYIAIVAEGFAGLPLLKRHQMVYALIAEEMAVVHAVSLSTKTPAE 417
            LSG +  +IQ V PEFI  + +  SLTPGRNNGF+NMLA MK+KA   +            A  G      P+  A+L+ LK L P R+E+ D S              E  F + IVAE F GL L+ RHQ++Y L+ + M  +HA+ +  KTP E
Sbjct:  119 LSGSTAAEIQAVDPEFITEAQIGQSLTPGRNNGFLNMLAVMKKKAALLDQQARSGITNDGGAATGGEESDRPMYNAILEALKVLKPTRIELTDNSAQHAGHEGAKGFDGESHFALDIVAEAFDGLSLVNRHQLIYVLLGDIMPKIHALQIRAKTPEE 275          
BLAST of mRNA_P-wetherbeei_contig13874.1.1 vs. uniprot
Match: K0R0F3_THAOC (SufE domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R0F3_THAOC)

HSP 1 Score: 104 bits (260), Expect = 3.160e-24
Identity = 64/170 (37.65%), Postives = 90/170 (52.94%), Query Frame = 1
Query:    1 LSGCSPQDIQRVKPEFIQASGLQTSLTPGRNNGFINMLATMKRKALEAEXXXXXXXXXXXEAG--------------EG-PVTAALLQKL-KALNPMRLEVED--------------ESGNEQKFYIAIVAEGFAGLPLLKRHQMVYALIAEEMAVVHAVSLSTKTPAEV 420
            LSGC+ + I  V P+FIQA+ +  +LTPGRNNGF+NMLA MK+KA +A             AG              EG P+  A+L  L   L P+ +E+ D              E   E  F + +VA+ F GLPL+KRHQ++Y L+ E M  +HA+ +  K+P E+
Sbjct:  165 LSGCTAEQIAAVDPQFIQAAKISQTLTPGRNNGFLNMLAVMKKKASDAVEGGDESPASGDAAGAENSGEVVTSFDEVEGKPMYNAILSTLVPILKPVSIELVDNSSQHAGHGGAKGWEESGESHFALDVVADVFDGLPLVKRHQLIYMLLGEVMPKIHALEIRAKSPGEI 334          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13874.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CLM4_9STRA7.660e-4962.96Cysteine desulfuration protein n=1 Tax=Tribonema m... [more]
A0A6H5KD56_9PHAE4.630e-3852.26SufE domain-containing protein n=3 Tax=Ectocarpus ... [more]
A0A4D9DCV6_9STRA4.320e-3345.28SufE domain-containing protein n=2 Tax=Monodopsida... [more]
M2XAG5_GALSU1.010e-3038.82Cysteine desulfuration protein SufE (Plastid) n=1 ... [more]
A0A7S1U3X6_9STRA1.130e-2741.92Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A1Z5K9T0_FISSO2.240e-2743.87SufE domain-containing protein n=2 Tax=Fistulifera... [more]
A0A7S3Q629_9STRA1.120e-2637.35Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S2XMD5_9STRA6.590e-2641.52Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S1GMQ2_CYCTE7.670e-2640.13Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
K0R0F3_THAOC3.160e-2437.65SufE domain-containing protein n=1 Tax=Thalassiosi... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13874contigP-wetherbeei_contig13874:1..797 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7G7R0
Preferred namebola1
PFAMsBolA,SufE
Model size429
Max annot lvl2759|Eukaryota
KEGG koko:K22066
Hectar predicted targeting categoryother localisation
Exons3
Evalue3.31e-40
EggNOG OGsCOG0271@1|root,KOG2313@2759|Eukaryota
Descriptionprotein maturation by iron-sulfur cluster transfer
Cds size429
COG categoryT
BRITEko00000,ko03029
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186000.177976-CDS-P-wetherbeei_contig13874:0..861683186000.177976-CDS-P-wetherbeei_contig13874:0..86Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13874 1..86 +
1683186000.1904361-CDS-P-wetherbeei_contig13874:349..4581683186000.1904361-CDS-P-wetherbeei_contig13874:349..458Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13874 350..458 +
1683186000.1981077-CDS-P-wetherbeei_contig13874:563..7971683186000.1981077-CDS-P-wetherbeei_contig13874:563..797Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13874 564..797 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13874.1.1prot_P-wetherbeei_contig13874.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13874 1..797 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13874.1.1

>prot_P-wetherbeei_contig13874.1.1 ID=prot_P-wetherbeei_contig13874.1.1|Name=mRNA_P-wetherbeei_contig13874.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=143bp
LSGCSPQDIQRVKPEFIQASGLQTSLTPGRNNGFINMLATMKRKALEAEA
AAAASAPAAAEAGEGPVTAALLQKLKALNPMRLEVEDESGNEQKFYIAIV
AEGFAGLPLLKRHQMVYALIAEEMAVVHAVSLSTKTPAEVGM*
back to top

mRNA from alignment at P-wetherbeei_contig13874:1..797+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13874.1.1 ID=mRNA_P-wetherbeei_contig13874.1.1|Name=mRNA_P-wetherbeei_contig13874.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=797bp|location=Sequence derived from alignment at P-wetherbeei_contig13874:1..797+ (Phaeothamnion wetherbeei SAG_119_79)
CTGTCCGGTTGCAGTCCGCAAGACATACAGCGGGTCAAGCCTGAGTTTAT CCAAGCCTCCGGACTCCAGACCAGCCTCACGCCGGGGTAAATCTTCGAGT TCTGTGGTGGATGCCGTTGCTTTCGTTCGTTGATGTCGAAGTTTGTTGCT TCATTTCGGAGGGCCTCTTCTGTTTTCCCCATTCGCAACTTTCGGATTGC GACGGACAATTTTGCTGTGAAATATTGACCTGCTCCTTTCATTCTTGGCA TGAAAGCATCAAAGAAGTCTATCGGTTCTCGATTTTCGCGCTTTGCTTCG TCCTGCTGTGCCTTTCCTCCGCTCTGGCGGACACATCGGACGTTGCCAGA CGCAACAACGGCTTCATCAACATGCTGGCCACGATGAAGCGAAAAGCGCT CGAGGCTGAGGCGGCTGCTGCGGCGTCGGCACCAGCAGCCGCAGAAGCTG GAGAAGGCGTCGCGGCAGCGACGGCAGGGGCTGAGTCGGACGCCGATGCC GGCGCGGCTGCAGGGGCGACGGGGACAACGGCGGCGTCAACGGGTGCAGC GGTCGACGGGAAGCCGGTGACGGCGGCGCTGCTGCAGAAGCTGAAGGCGC TGAACCCGATGCGGCTCGAGGTGGAGGACGAGAGCGGTAATGAGCAGAAA TTCTACATCGCCATCGTAGCGGAGGGCTTCGCGGGGCTGCCGCTGCTGAA GCGGCACCAGATGGTGTACGCGCTCATCGCCGAGGAGATGGCCGTCGTCC ACGCCGTCTCCCTCAGCACAAAGACGCCTGCCGAGGTCGGCATGTGA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig13874:1..797+

>mRNA_P-wetherbeei_contig13874.1.1 ID=mRNA_P-wetherbeei_contig13874.1.1|Name=mRNA_P-wetherbeei_contig13874.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=429bp|location=Sequence derived from alignment at P-wetherbeei_contig13874:1..797+ (Phaeothamnion wetherbeei SAG_119_79)
CTGTCCGGTTGCAGTCCGCAAGACATACAGCGGGTCAAGCCTGAGTTTAT
CCAAGCCTCCGGACTCCAGACCAGCCTCACGCCGGGACGCAACAACGGCT
TCATCAACATGCTGGCCACGATGAAGCGAAAAGCGCTCGAGGCTGAGGCG
GCTGCTGCGGCGTCGGCACCAGCAGCCGCAGAAGCTGGAGAAGGCCCGGT
GACGGCGGCGCTGCTGCAGAAGCTGAAGGCGCTGAACCCGATGCGGCTCG
AGGTGGAGGACGAGAGCGGTAATGAGCAGAAATTCTACATCGCCATCGTA
GCGGAGGGCTTCGCGGGGCTGCCGCTGCTGAAGCGGCACCAGATGGTGTA
CGCGCTCATCGCCGAGGAGATGGCCGTCGTCCACGCCGTCTCCCTCAGCA
CAAAGACGCCTGCCGAGGTCGGCATGTGA
back to top