mRNA_P-wetherbeei_contig13873.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13873.2.1
Unique NamemRNA_P-wetherbeei_contig13873.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig13873.2.1 vs. uniprot
Match: A0A3N5HBF9_9HYPH (Uncharacterized protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A3N5HBF9_9HYPH)

HSP 1 Score: 182 bits (461), Expect = 8.220e-56
Identity = 90/164 (54.88%), Postives = 126/164 (76.83%), Query Frame = 1
Query:   13 LSGALRKARLAEAAHFEAVLGIKDSKSLRLQVLKDELIPIIAATPEAAHVFDLALVPGEPPRLWIDLISFVEMEPDYRTYRLQQDNQGGREALFETADRAEMKTYLKSYLAHRMIARERQIVRAAPVSQPSARYTAGAVVYAWFNGLILGILAFIVAAISLGKL 504
            ++ ALR+AR AEAAH +AV  ++D+K++RLQ+LKD+L+PI+AA P++ H+FDLALVPG+PPRLWIDLIS+V MEP++R+YRL +D Q GRE LFE+ DRA M   ++ ++AHR++AR+ QI       +P A ++ G+V+ AW  G  LG LA + AAI LGKL
Sbjct:    1 MTQALRQARAAEAAHADAVFALRDAKAIRLQLLKDDLMPIVAALPQSEHLFDLALVPGDPPRLWIDLISYVVMEPEHRSYRLYEDRQSGREILFESEDRALMVERIRRHMAHRLVARQHQIASVTSADRP-AGFSVGSVILAWLAGFALGALALLAAAILLGKL 163          
BLAST of mRNA_P-wetherbeei_contig13873.2.1 vs. uniprot
Match: A0A6G6WN26_9HYPH (Uncharacterized protein n=1 Tax=Nordella sp. HKS 07 TaxID=2712222 RepID=A0A6G6WN26_9HYPH)

HSP 1 Score: 175 bits (443), Expect = 8.090e-53
Identity = 92/168 (54.76%), Postives = 123/168 (73.21%), Query Frame = 1
Query:   13 LSGALRKARLAEAAHFEAVLGIKDSKSLRLQVLKDELIPIIAATPEAAHVFDLALVPGEPPRLWIDLISFVEMEPDYRTYRLQQDNQGGREALFETADRAEMKTYLKSYLAHRMIARERQIVRAAPVSQPSAR----YTAGAVVYAWFNGLILGILAFIVAAISLGKL 504
            L+GALR+ARLAEAAHFEAVL I+D+++LRLQVLKD+L+PI+A    A    DLALVPG+PPRLW+DLI+ V M PD RTYRL QD+  GR+ LFETADRAEM   +  ++AHR++ARER++   + ++  S      Y+ GA++ AW +G  +G LA  VA I + +L
Sbjct:   15 LNGALRQARLAEAAHFEAVLEIRDAQTLRLQVLKDDLVPIVAGGSAATSFIDLALVPGDPPRLWVDLITSVVMAPDPRTYRLVQDSPAGRQTLFETADRAEMVERVTQHIAHRLVAREREMTAVSTLAADSKAAITGYSTGALILAWVSGFSVGALALFVAGILISRL 182          
BLAST of mRNA_P-wetherbeei_contig13873.2.1 vs. uniprot
Match: A0A2W2ATB8_9HYPH (Uncharacterized protein n=1 Tax=Aestuariivirga litoralis TaxID=2650924 RepID=A0A2W2ATB8_9HYPH)

HSP 1 Score: 168 bits (425), Expect = 3.390e-50
Identity = 85/168 (50.60%), Postives = 120/168 (71.43%), Query Frame = 1
Query:    1 EHDDLSGALRKARLAEAAHFEAVLGIKDSKSLRLQVLKDELIPIIAATPEAAHVFDLALVPGEPPRLWIDLISFVEMEPDYRTYRLQQDNQGGREALFETADRAEMKTYLKSYLAHRMIARERQIVRAAPVSQPSARYTAGAVVYAWFNGLILGILAFIVAAISLGKL 504
            + D L+ ALR+ARLAEAAHFEA   ++DSK+LRLQ+LKD+L+P + A PEA  +FDL L+PGEPP+LW+DL ++V MEPD+RTYR+ QD Q  R+ LFE  DR +    ++ ++AHR++ARERQ  +  PV+   A Y++  ++ AW +G   G LA + AA+  G L
Sbjct:    9 DRDGLAEALREARLAEAAHFEAARDLRDSKTLRLQILKDDLVPTVQANPEARELFDLTLLPGEPPKLWVDLTAYVVMEPDHRTYRVLQDRQDSRDILFEGRDREQAAAAIRRHMAHRLVARERQAAQ-LPVAA-GAGYSSATLMLAWVSGFAFGALALVAAALYTGLL 174          
BLAST of mRNA_P-wetherbeei_contig13873.2.1 vs. uniprot
Match: UPI00190497C2 (hypothetical protein n=1 Tax=Aestuariivirga sp. YIM B02566 TaxID=2800327 RepID=UPI00190497C2)

HSP 1 Score: 161 bits (407), Expect = 2.320e-47
Identity = 88/171 (51.46%), Postives = 119/171 (69.59%), Query Frame = 1
Query:   13 LSGALRKARLAEAAHFEAVLGIKDSKSLRLQVLKDELIPIIAATPEAAHVFDLALVPGEPPRLWIDLISFVEMEPDYRTYRLQQDNQGGREALFETADRAEMKTYLKSYLAHRMIARERQIVRAAPVSQPSAR-------YTAGAVVYAWFNGLILGILAFIVAAISLGKL 504
            L GALR+ARLAEAAHF+AVL I+D+++LRLQVLKD+L P++A+   A    DLALVPG+PPRLW+DLI+ V M PD R+YRL QD+  GR+ L ET +R EM   +  ++AHR+IARER+I     VS PSA        ++  A++ AW +G  +G LA  +A I + +L
Sbjct:   15 LGGALRQARLAEAAHFDAVLDIRDAQTLRLQVLKDDLAPVVASNSAATSFIDLALVPGDPPRLWVDLITSVVMAPDPRSYRLVQDSPAGRQTLLETTNRDEMIERITQHIAHRLIAREREITA---VSAPSAGLKPAIIGHSTTALILAWLSGFSIGALALFIAGILISRL 182          
BLAST of mRNA_P-wetherbeei_contig13873.2.1 vs. uniprot
Match: A0A847ZR10_9HYPH (Uncharacterized protein n=1 Tax=Phyllobacteriaceae bacterium TaxID=1871068 RepID=A0A847ZR10_9HYPH)

HSP 1 Score: 144 bits (362), Expect = 1.120e-40
Identity = 80/169 (47.34%), Postives = 107/169 (63.31%), Query Frame = 1
Query:    4 HDDLSGALRKARLAEAAHFEAVLGIKDSKSLRLQVLKDELIPIIAATPEAAHVFDLALVPGEPPRLWIDLISFVEMEPDYRTYRLQQDNQGGREALFETADRAEMKTYLKSYLAHRMIARERQIVRAAPVSQPSAR--YTAGAVVYAWFNGLILGILAFIVAAISLGKL 504
            HD  + AL+ ARLAEAAH +A+L +K+++ LRL  L++ L+P +A  P A    +L L PGE PRLWIDLIS V +EPD R++RL+Q+  G R+ L ET D  EM   +  Y+AHR+IARE+    A    +  +R  Y  G +VY WF G  LG LA +  AI LG L
Sbjct:    4 HDQFTQALKTARLAEAAHVDALLNVKEARGLRLAALRECLLPKLAGHPMAEGFAELTLQPGETPRLWIDLISSVVVEPDTRSFRLEQERDGRRDLLHETTDLDEMSGVVLKYIAHRVIAREKLAATATASGKGDSRQVYNLGEMVYVWFTGAALGALALLAVAILLGIL 172          
BLAST of mRNA_P-wetherbeei_contig13873.2.1 vs. uniprot
Match: A0A7Y2FUN3_9HYPH (Uncharacterized protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7Y2FUN3_9HYPH)

HSP 1 Score: 142 bits (359), Expect = 3.680e-40
Identity = 75/162 (46.30%), Postives = 109/162 (67.28%), Query Frame = 1
Query:    1 EHDDLSGALRKARLAEAAHFEAVLGIKDSKSLRLQVLKDELIPIIAATPEAAHVFDLALVPGEPPRLWIDLISFVEMEPDYRTYRLQQDNQGGREALFETADRAEMKTYLKSYLAHRMIARERQIVR-AAPVSQPSARYTAGAVVYAWFNGLILGILAFIVA 483
            + D+L  +LR+ARL ++A+ +AV  I+D+++LRLQVL DEL P++ A PE A   +LALV G+PPRLWIDL S+V   PD RT+RL QD + GR+ L ET +R+EM   +  ++AHR + R+R++ + AA    P  RY+  A++ +W  G   GIL   VA
Sbjct:   11 DRDELDASLREARLKQSAYHDAVTDIRDAQTLRLQVLYDELAPLVRARPETAAFIELALVAGDPPRLWIDLTSYVTTAPDPRTFRLVQDTRQGRDILLETKNRSEMHKTVVEFIAHRAVQRQRELPQTAAGQPVPGGRYSTPALILSWLTGFSFGILMLYVA 172          
BLAST of mRNA_P-wetherbeei_contig13873.2.1 vs. uniprot
Match: UPI0018C6CF8D (hypothetical protein n=1 Tax=Aestuariivirga litoralis TaxID=2650924 RepID=UPI0018C6CF8D)

HSP 1 Score: 142 bits (357), Expect = 7.170e-40
Identity = 77/169 (45.56%), Postives = 108/169 (63.91%), Query Frame = 1
Query:    1 EHDDLSGALRKARLAEAAHFEAVLGIKDSKSLRLQVLKDELIPIIAATPEAAHVFDLALVPGEPPRLWIDLISFVEMEPDYRTYRLQQDNQGGREALFETADRAEMKTYLKSYLAHRMIARERQIVRAAPVSQP-SARYTAGAVVYAWFNGLILGILAFIVAAISLGKL 504
            E D L+ AL+ ARLAEA   +A+L  +D++ LRL  L+D ++P +A    A  +FDL +V GE P+LWIDLIS+VEMEPD +TYRL Q  +     LFET+D AEM+ ++  Y+AHR++ RER+ V    V Q    RY+ G ++Y W  GL+ G+L     A+  G L
Sbjct:    8 EPDTLTKALKDARLAEAVQLDAILNARDARILRLGALRDAVLPELAGHDAAKTLFDLNVVEGEKPKLWIDLISWVEMEPDPKTYRLVQSRESAEGILFETSDAAEMQRFIIRYMAHRLVERERRTVNTGFVGQTVQRRYSFGELLYVWATGLLFGVLGLTAVALIQGWL 176          
BLAST of mRNA_P-wetherbeei_contig13873.2.1 vs. uniprot
Match: A0A7S8HD40_9HYPH (Uncharacterized protein n=1 Tax=Kaustia mangrovi TaxID=2593653 RepID=A0A7S8HD40_9HYPH)

HSP 1 Score: 138 bits (347), Expect = 2.330e-38
Identity = 75/161 (46.58%), Postives = 102/161 (63.35%), Query Frame = 1
Query:   13 LSGALRKARLAEAAHFEAVLGIKDSKSLRLQVLKDELIPIIAATPEAAHVFDLALVPGEPPRLWIDLISFVEMEPDYRTYRLQQDNQGGREALFETADRAEMKTYLKSYLAHRMIARERQIVRAAPVSQPSARYTAGAVVYAWFNGLILGILAFIVAAISL 495
            L  ALR+ARL EA H +A+  I+D+K LRL  LKDEL   +A   EA  +FDL++  GEPPRLWID++S+V +EPD RTYRL QD + GR  LFE+ DRAE    +  ++AHRM+ RER    AAP  +    Y+  ++++A   G  LG L  +   + L
Sbjct:   13 LDKALRQARLVEAEHLDALFDIRDAKQLRLVTLKDELEREVAGRSEARELFDLSIAMGEPPRLWIDMVSYVTLEPDPRTYRLVQDTRDGRVVLFESGDRAETVERVVQFMAHRMVERERAKAGAAPEGRVVMGYSGVSLLFAGICGFALGALGLLALGVLL 173          
BLAST of mRNA_P-wetherbeei_contig13873.2.1 vs. uniprot
Match: UPI00198BF170 (Uncharacterized protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=UPI00198BF170)

HSP 1 Score: 123 bits (308), Expect = 5.990e-33
Identity = 67/125 (53.60%), Postives = 84/125 (67.20%), Query Frame = 1
Query:    7 DDLSG---ALRKARLAEAAHFEAVLGIKDSKSLRLQVLKDELIPIIAATPEAAHVFDLALVPGEPPRLWIDLISFVEMEPDYRTYRLQQDNQGGREALFETADRAEMKTYLKSYLAHRMIARERQ 372
            +D+ G   ALR+AR AEAAH EAV  +  + SLRLQVLK+EL  I+A +PEA   F+LAL PG+ PRLWIDL + V MEPD +TYRL Q   G  + + ET DRA M   +K  +AH MI R R+
Sbjct:   14 EDMGGFGTALRQARAAEAAHLEAVRSLSSAASLRLQVLKEELAGIVAVSPEAREAFELALAPGDSPRLWIDLNTSVVMEPDPKTYRLVQQGGGSLDVVLETTDRAAMVQQVKLIMAHGMIGRRRR 138          
BLAST of mRNA_P-wetherbeei_contig13873.2.1 vs. uniprot
Match: UPI0019B119A6 (Uncharacterized protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=UPI0019B119A6)

HSP 1 Score: 120 bits (301), Expect = 1.030e-31
Identity = 70/149 (46.98%), Postives = 89/149 (59.73%), Query Frame = 1
Query:   49 AAHFEAVLGIKDSKSLRLQVLKDELIPIIAATPEAAHVFDLALVPGEPPRLWIDLISFVEMEPDYRTYRLQQDNQGGREALFETADRAEMKTYLKSYLAHRMIARERQIVRAAPVSQPSARYTAGAVVYAWFNGLILGILAFIVAAISL 495
            AAH EAV  +  + SLRLQVLK+EL  I+AA+PEA   F+LAL PG+ PRLWIDL + V MEPD +TYRL Q   G    + ET DRA M   +K  +AH MI R R+            RY+   ++    +G  LG L+F+ AAI L
Sbjct:    1 AAHLEAVRSLSSAASLRLQVLKEELAGIVAASPEAREAFELALAPGDSPRLWIDLNTSVVMEPDPKTYRLVQQGGGNLNIVLETPDRAAMVQQVKLIMAHGMIGRRRRAGGLRLKDDLGRRYSGALLILTGLSGFFLGALSFLGAAICL 149          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13873.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3N5HBF9_9HYPH8.220e-5654.88Uncharacterized protein n=1 Tax=Hyphomicrobiales b... [more]
A0A6G6WN26_9HYPH8.090e-5354.76Uncharacterized protein n=1 Tax=Nordella sp. HKS 0... [more]
A0A2W2ATB8_9HYPH3.390e-5050.60Uncharacterized protein n=1 Tax=Aestuariivirga lit... [more]
UPI00190497C22.320e-4751.46hypothetical protein n=1 Tax=Aestuariivirga sp. YI... [more]
A0A847ZR10_9HYPH1.120e-4047.34Uncharacterized protein n=1 Tax=Phyllobacteriaceae... [more]
A0A7Y2FUN3_9HYPH3.680e-4046.30Uncharacterized protein n=1 Tax=Hyphomicrobiales b... [more]
UPI0018C6CF8D7.170e-4045.56hypothetical protein n=1 Tax=Aestuariivirga litora... [more]
A0A7S8HD40_9HYPH2.330e-3846.58Uncharacterized protein n=1 Tax=Kaustia mangrovi T... [more]
UPI00198BF1705.990e-3353.60Uncharacterized protein n=1 Tax=Hyphomicrobiales b... [more]
UPI0019B119A61.030e-3146.98Uncharacterized protein n=1 Tax=Hyphomicrobiales b... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13873contigP-wetherbeei_contig13873:1279..1782 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1134912.AJTV01000043_gene3611
Model size504
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.57e-25
EggNOG OGs28KZ2@1|root,2ZAEF@2|Bacteria,1RAF2@1224|Proteobacteria,2U3QP@28211|Alphaproteobacteria,36YPA@31993|Methylocystaceae
Cds size504
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186000.1324887-CDS-P-wetherbeei_contig13873:1278..17821683186000.1324887-CDS-P-wetherbeei_contig13873:1278..1782Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13873 1279..1782 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13873.2.1prot_P-wetherbeei_contig13873.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13873 1279..1782 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13873.2.1

>prot_P-wetherbeei_contig13873.2.1 ID=prot_P-wetherbeei_contig13873.2.1|Name=mRNA_P-wetherbeei_contig13873.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=168bp
EHDDLSGALRKARLAEAAHFEAVLGIKDSKSLRLQVLKDELIPIIAATPE
AAHVFDLALVPGEPPRLWIDLISFVEMEPDYRTYRLQQDNQGGREALFET
ADRAEMKTYLKSYLAHRMIARERQIVRAAPVSQPSARYTAGAVVYAWFNG
LILGILAFIVAAISLGKL
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mRNA from alignment at P-wetherbeei_contig13873:1279..1782+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13873.2.1 ID=mRNA_P-wetherbeei_contig13873.2.1|Name=mRNA_P-wetherbeei_contig13873.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=504bp|location=Sequence derived from alignment at P-wetherbeei_contig13873:1279..1782+ (Phaeothamnion wetherbeei SAG_119_79)
GAGCACGACGATCTCAGCGGTGCATTGCGCAAGGCCCGCCTGGCGGAAGC GGCCCATTTTGAGGCGGTTCTTGGAATCAAGGATTCCAAATCGCTCCGGC TCCAGGTGTTAAAGGACGAACTGATCCCAATCATTGCGGCAACCCCGGAA GCGGCCCATGTGTTTGATCTCGCCCTTGTTCCCGGCGAGCCGCCGCGGCT GTGGATTGACCTCATATCCTTTGTCGAGATGGAGCCGGATTACCGGACCT ACCGCCTGCAGCAGGACAACCAAGGAGGCCGCGAGGCGCTGTTTGAAACA GCCGACCGGGCTGAAATGAAAACTTATCTCAAATCCTACCTGGCCCACCG GATGATTGCCCGGGAGCGCCAAATTGTGCGCGCCGCACCGGTTTCCCAGC CTTCGGCACGGTATACCGCCGGGGCCGTGGTTTACGCCTGGTTCAACGGA CTTATCCTCGGCATCCTGGCTTTTATAGTTGCAGCTATCTCATTGGGAAA GCTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13873:1279..1782+

>mRNA_P-wetherbeei_contig13873.2.1 ID=mRNA_P-wetherbeei_contig13873.2.1|Name=mRNA_P-wetherbeei_contig13873.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=504bp|location=Sequence derived from alignment at P-wetherbeei_contig13873:1279..1782+ (Phaeothamnion wetherbeei SAG_119_79)
GAGCACGACGATCTCAGCGGTGCATTGCGCAAGGCCCGCCTGGCGGAAGC
GGCCCATTTTGAGGCGGTTCTTGGAATCAAGGATTCCAAATCGCTCCGGC
TCCAGGTGTTAAAGGACGAACTGATCCCAATCATTGCGGCAACCCCGGAA
GCGGCCCATGTGTTTGATCTCGCCCTTGTTCCCGGCGAGCCGCCGCGGCT
GTGGATTGACCTCATATCCTTTGTCGAGATGGAGCCGGATTACCGGACCT
ACCGCCTGCAGCAGGACAACCAAGGAGGCCGCGAGGCGCTGTTTGAAACA
GCCGACCGGGCTGAAATGAAAACTTATCTCAAATCCTACCTGGCCCACCG
GATGATTGCCCGGGAGCGCCAAATTGTGCGCGCCGCACCGGTTTCCCAGC
CTTCGGCACGGTATACCGCCGGGGCCGTGGTTTACGCCTGGTTCAACGGA
CTTATCCTCGGCATCCTGGCTTTTATAGTTGCAGCTATCTCATTGGGAAA
GCTC
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