mRNA_P-wetherbeei_contig13857.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13857.1.1
Unique NamemRNA_P-wetherbeei_contig13857.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig13857.1.1 vs. uniprot
Match: A0A835ZIK8_9STRA (FAD dependent oxidoreductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIK8_9STRA)

HSP 1 Score: 200 bits (508), Expect = 1.910e-60
Identity = 96/143 (67.13%), Postives = 113/143 (79.02%), Query Frame = 1
Query:    1 LCGVGGSDYGSAERLKAGGDCESPSLIKANSSRVGAAWASFSEMSSLGAAEPEVEQACMRPCPPDGLPIMGPVPGVTGAYIAAGHNCWGILWGPVTGLAMSEVILDGEAKCVDLSAFRPSRFMTRAGRGRGRKKAGQAVGEQW 429
            +CG+GGSDY  A RL+ GGDCE+P LIKA+  RV AA  SFS M+S+GA  P+V QACMRPCPPD LPIMG VPGV GAYI AGHNCWGILW PV+G+AM+E+++DG A  VDL+ F P+RFMTRA  GRGRK+    VGEQW
Sbjct:  251 ICGLGGSDYVDAARLRPGGDCEAPELIKADPRRVAAATKSFSSMTSIGATPPDVSQACMRPCPPDALPIMGAVPGVEGAYICAGHNCWGILWAPVSGVAMAELVVDGAAAVVDLAPFSPARFMTRASGGRGRKRGTAEVGEQW 393          
BLAST of mRNA_P-wetherbeei_contig13857.1.1 vs. uniprot
Match: A0A061QVU1_9CHLO (DAO domain-containing protein (Fragment) n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061QVU1_9CHLO)

HSP 1 Score: 198 bits (503), Expect = 3.450e-59
Identity = 99/144 (68.75%), Postives = 111/144 (77.08%), Query Frame = 1
Query:    1 LCGVGGSDYGSAERLKAGGDCESPSLIKANSSRVGAAWASFSEMSSLGAAEPEVEQACMRPCPPDGLPIMGPVPGVTGAYIAAGHNCWGILWGPVTGLAMSEVILDGEAKCVDLSAFRPSRFMTRAGRG-RGRKKAGQAVGEQW 429
            +CG GGSDY   ERL +GGDCE+P  I  +  RV AA ASF+ +SSLGA EP++ QACMRPCPPD LPIMG  PG  GAY+A GHNCWGILWGPVTGLAMSE+I DG A CVDL+ F PSRFM R G G RGRK+  QAVGEQW
Sbjct:  298 ICGCGGSDYVGGERLASGGDCEAPEKILPDPQRVKAASASFAGLSSLGAREPDLTQACMRPCPPDALPIMGKAPGTEGAYLACGHNCWGILWGPVTGLAMSELIADGNASCVDLAPFSPSRFMPRKGAGARGRKRGLQAVGEQW 441          
BLAST of mRNA_P-wetherbeei_contig13857.1.1 vs. uniprot
Match: D8LTU1_ECTSI (DAO domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTU1_ECTSI)

HSP 1 Score: 182 bits (462), Expect = 1.820e-53
Identity = 94/144 (65.28%), Postives = 109/144 (75.69%), Query Frame = 1
Query:    1 LCGVGGSDYGSAERLKAGGDCESPSLIKANSSRVGAAWASFSEMSSLGAAEPEVEQACMRPCPPDGLPIMGPVPGVTGAYIAAGHNCWGILWGPVTGLAMSEVILDGEAKCVDLSAFRPSRFMTRAG-RGRGRKKAGQAVGEQW 429
            LCG+GGSDY    RLKAGGDC+ P +I+ + SRV AA  SF  M+S+G   P V QACMRPCPPDGLPIMG VPGV GAYI+AGHNCWGILWGPVTGL MSE+++DG+A  V++  F PSRF  +A  RGR RK A   VGEQW
Sbjct:  260 LCGLGGSDYVDPPRLKAGGDCDKPEVIQPDPSRVTAATNSFKGMTSIGNEGPTVTQACMRPCPPDGLPIMGEVPGVRGAYISAGHNCWGILWGPVTGLLMSELLVDGKATTVNIGPFSPSRFQRKASSRGR-RKGASDLVGEQW 402          
BLAST of mRNA_P-wetherbeei_contig13857.1.1 vs. uniprot
Match: A0A7S2BBJ7_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2BBJ7_9EUKA)

HSP 1 Score: 167 bits (422), Expect = 3.150e-47
Identity = 86/144 (59.72%), Postives = 106/144 (73.61%), Query Frame = 1
Query:    1 LCGVGGSDYGSAERLKAGGDCESPSLIKANSSRVGAAWASFSEMSSLGAAEPEVEQACMRPCPPDGLPIMGPVPGVTGAYIAAGHNCWGILWGPVTGLAMSEVILDGEAKCVDLSAFRPSRFMTRAGRG-RGRKKAGQAVGEQW 429
            LCG+GGS+Y   ERL+AG     P  + A+ +RV AA ASF+ MS     EP+  QACMRPCPPD LP MG VP ++ AY++AGHNCWGILW P++GLAMSE+ILDG+A CVDL AF P RF+ +A  G RGRK+  +AVGEQW
Sbjct:  292 LCGIGGSEYVDGERLRAGD--YPPGEVHADPARVKAATASFTSMSKRLGGEPDHVQACMRPCPPDALPYMGKVPSLSNAYMSAGHNCWGILWAPISGLAMSELILDGKASCVDLRAFDPGRFIPKARTGTRGRKRGEEAVGEQW 433          
BLAST of mRNA_P-wetherbeei_contig13857.1.1 vs. uniprot
Match: A0A7S2CAG5_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CAG5_9STRA)

HSP 1 Score: 160 bits (406), Expect = 8.270e-47
Identity = 82/144 (56.94%), Postives = 102/144 (70.83%), Query Frame = 1
Query:    1 LCGVGGSDYGSAERLKAGGDCESPSLIKANSSRVGAAWASFSEMSSLGAAEPEVEQACMRPCPPDGLPIMGPVPGVTGAYIAAGHNCWGILWGPVTGLAMSEVILDGEAKCVDLSAFRPSRFMTRAGRG-RGRKKAGQAVGEQW 429
            LCG+GGS+Y   ERL+AG     P  +  +  RV AA ASFS MS      P+  QACMRPCPPD +P+MG +  + GAY++AGHNCWGILW PV+G +MSE++LDGEA CVDL+ F P RF+ +A RG RGRK+   AVGEQW
Sbjct:  105 LCGIGGSEYVDPERLRAGEF--PPGEVHPDPKRVEAATASFSTMSKRLGGTPDTVQACMRPCPPDAMPMMGKITNIVGAYMSAGHNCWGILWAPVSGKSMSELVLDGEAACVDLAPFSPMRFLPKAERGGRGRKRGAVAVGEQW 246          
BLAST of mRNA_P-wetherbeei_contig13857.1.1 vs. uniprot
Match: A0A7S0IJ01_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0IJ01_9EUKA)

HSP 1 Score: 163 bits (413), Expect = 2.310e-46
Identity = 83/143 (58.04%), Postives = 100/143 (69.93%), Query Frame = 1
Query:    1 LCGVGGSDYGSAERLKAGGDCESPSLIKANSSRVGAAWASFSEMSSLGAAEPEVEQACMRPCPPDGLPIMGPVPGVTGAYIAAGHNCWGILWGPVTGLAMSEVILDGEAKCVDLSAFRPSRFMTRAGRGRGRKKAGQAVGEQW 429
            LCG+GGS+Y   ERL+AG     P  + A+ +RV AA  SF+ MS     EP V QACMRPCPPD LP MG VP +  AY++AGHNCWGILW PV+G AMSE+I+DG+A CVDL  F P RF  R   GRGRK+  ++VGEQW
Sbjct:  242 LCGIGGSEYVDGERLRAGE--LPPGSVHADPARVKAATQSFNAMSKRLGGEPAVVQACMRPCPPDALPYMGRVPSLNNAYMSAGHNCWGILWAPVSGKAMSELIIDGQASCVDLKPFNPGRFAPRKEGGRGRKRGEESVGEQW 382          
BLAST of mRNA_P-wetherbeei_contig13857.1.1 vs. uniprot
Match: A0A7S3AF44_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AF44_9EUKA)

HSP 1 Score: 163 bits (412), Expect = 3.550e-46
Identity = 86/144 (59.72%), Postives = 104/144 (72.22%), Query Frame = 1
Query:    1 LCGVGGSDYGSAERLKAGGDCESPSLIKANSSRVGAAWASFSEMSS-LGAAEPEVEQACMRPCPPDGLPIMGPVPGVTGAYIAAGHNCWGILWGPVTGLAMSEVILDGEAKCVDLSAFRPSRFMTRAGRGRGRKKAGQAVGEQW 429
            LCG+GGS+Y S ERL+AG     P  ++A+ +RV AA A+F EMS       P   QACMRPCPPD LP MG VPG+ GAYI+AGHNCWGILW PV+G AMSE+++DG+A CVDL AF P+RF+    R RGRK+  Q VGEQW
Sbjct:  246 LCGIGGSEYVSDERLRAGEF--PPGQVEADPARVSAATAAFWEMSKRFDGVAPATVQACMRPCPPDALPFMGAVPGLDGAYISAGHNCWGILWAPVSGKAMSELLIDGKASCVDLRAFDPARFVPTQ-RNRGRKRGDQPVGEQW 386          
BLAST of mRNA_P-wetherbeei_contig13857.1.1 vs. uniprot
Match: K8F1Y5_9CHLO (DAO domain-containing protein n=1 Tax=Bathycoccus prasinos TaxID=41875 RepID=K8F1Y5_9CHLO)

HSP 1 Score: 163 bits (413), Expect = 5.080e-46
Identity = 83/144 (57.64%), Postives = 102/144 (70.83%), Query Frame = 1
Query:    1 LCGVGGSDYGSAERLKAGGDCESPSLIKANSSRVGAAWASFSEMS-SLGAAEPEVEQACMRPCPPDGLPIMGPVPGVTGAYIAAGHNCWGILWGPVTGLAMSEVILDGEAKCVDLSAFRPSRFMTRAGRGRGRKKAGQAVGEQW 429
            LCG+GGSDY   +RL  GGDCES  LIKA+ SRV AAW SF  MS S+G++ P + QACMRPC PD LP +G +P V  A +A+ HNCWGILW P+TG  +SE+I+DG++ C +L  F P RF   A  GRGRKK   +VGEQW
Sbjct:  277 LCGIGGSDYVDEDRLAPGGDCESADLIKADPSRVQAAWDSFKSMSPSVGSSPPILTQACMRPCAPDALPFLGKLPNVENAIVASAHNCWGILWAPITGQIVSELIMDGKSSC-NLEHFSPGRFARPATNGRGRKKGILSVGEQW 419          
BLAST of mRNA_P-wetherbeei_contig13857.1.1 vs. uniprot
Match: R1BWH5_EMIHU (DAO domain-containing protein n=3 Tax=Emiliania huxleyi TaxID=2903 RepID=R1BWH5_EMIHU)

HSP 1 Score: 160 bits (406), Expect = 3.020e-45
Identity = 83/143 (58.04%), Postives = 100/143 (69.93%), Query Frame = 1
Query:    1 LCGVGGSDYGSAERLKAGGDCESPSLIKANSSRVGAAWASFSEMSSLGAAEPEVEQACMRPCPPDGLPIMGPVPGVTGAYIAAGHNCWGILWGPVTGLAMSEVILDGEAKCVDLSAFRPSRFMTRAGRGRGRKKAGQAVGEQW 429
            LCG+GGS+Y  A+ L+AG     P  + A+ +RV AA  SFS MS      P+  QACMRPCPPD LP MG V G T AY++AGHNCWGILW PV+G AMSE+ILDGEA CVDL  F P+RF  +   GRGRK+  ++VGEQW
Sbjct:  250 LCGIGGSEYVDADELRAGK--YPPGQVHADPARVKAATDSFSTMSRRLGGTPDTVQACMRPCPPDALPYMGRVRGFTNAYMSAGHNCWGILWAPVSGKAMSELILDGEASCVDLRPFDPARFAKKKSGGRGRKRGEESVGEQW 390          
BLAST of mRNA_P-wetherbeei_contig13857.1.1 vs. uniprot
Match: A0A6T9DBC0_NOCSC (Hypothetical protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A6T9DBC0_NOCSC)

HSP 1 Score: 160 bits (404), Expect = 5.600e-45
Identity = 83/143 (58.04%), Postives = 100/143 (69.93%), Query Frame = 1
Query:    1 LCGVGGSDYGSAERLKAGGDCESPSLIKANSSRVGAAWASFSEMSSLGAAEPEVEQACMRPCPPDGLPIMGPVPGVTGAYIAAGHNCWGILWGPVTGLAMSEVILDGEAKCVDLSAFRPSRFMTRAGRGRGRKKAGQAVGEQW 429
            LCGVGGS++    RL AG     P  + A+ +RV AA A+FS MS      PE  QACMRPC  DG+P+MG VP V GAY++ GHNCWGILW PV+GLAMSE++LDG+A+CVDLSAF P+RF  R    RGRK+    VGEQW
Sbjct:  247 LCGVGGSEHVDGARLVAGE--YPPGEVHADPARVEAATAAFSTMSKTLGGTPETSQACMRPCTRDGIPLMGKVPHVKGAYMSCGHNCWGILWAPVSGLAMSELLLDGQARCVDLSAFNPARFQRRREGARGRKRGEDDVGEQW 387          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13857.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZIK8_9STRA1.910e-6067.13FAD dependent oxidoreductase n=1 Tax=Tribonema min... [more]
A0A061QVU1_9CHLO3.450e-5968.75DAO domain-containing protein (Fragment) n=1 Tax=T... [more]
D8LTU1_ECTSI1.820e-5365.28DAO domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S2BBJ7_9EUKA3.150e-4759.72Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A7S2CAG5_9STRA8.270e-4756.94Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S0IJ01_9EUKA2.310e-4658.04Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A7S3AF44_9EUKA3.550e-4659.72Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
K8F1Y5_9CHLO5.080e-4657.64DAO domain-containing protein n=1 Tax=Bathycoccus ... [more]
R1BWH5_EMIHU3.020e-4558.04DAO domain-containing protein n=3 Tax=Emiliania hu... [more]
A0A6T9DBC0_NOCSC5.600e-4558.04Hypothetical protein n=1 Tax=Noctiluca scintillans... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13857contigP-wetherbeei_contig13857:2..1219 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LTU1
PFAMsDAO
Model size432
Max annot lvl2759|Eukaryota
KEGG koko:K01228
KEGG ReactionR05979
KEGG Pathwayko00510,ko01100,ko04141,map00510,map01100,map04141
KEGG ModuleM00073
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005768,GO:0005770,GO:0006810,GO:0007049,GO:0008150,GO:0008152,GO:0009987,GO:0012505,GO:0016192,GO:0016197,GO:0016482,GO:0016491,GO:0022414,GO:0031410,GO:0031982,GO:0042147,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0046907,GO:0051179,GO:0051234,GO:0051321,GO:0051641,GO:0051649,GO:0055114,GO:0097708
Exons3
Evalue2.98e-54
EggNOG OGsCOG0665@1|root,KOG2852@2759|Eukaryota
EC3.2.1.106
Descriptionretrograde transport, endosome to Golgi
Cds size432
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185999.4379056-CDS-P-wetherbeei_contig13857:1..851683185999.4379056-CDS-P-wetherbeei_contig13857:1..85Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13857 2..85 +
1683185999.4491055-CDS-P-wetherbeei_contig13857:533..7221683185999.4491055-CDS-P-wetherbeei_contig13857:533..722Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13857 534..722 +
1683185999.4583366-CDS-P-wetherbeei_contig13857:1060..12191683185999.4583366-CDS-P-wetherbeei_contig13857:1060..1219Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13857 1061..1219 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13857.1.1prot_P-wetherbeei_contig13857.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13857 2..1219 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13857.1.1

>prot_P-wetherbeei_contig13857.1.1 ID=prot_P-wetherbeei_contig13857.1.1|Name=mRNA_P-wetherbeei_contig13857.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=144bp
LCGVGGSDYGSAERLKAGGDCESPSLIKANSSRVGAAWASFSEMSSLGAA
EPEVEQACMRPCPPDGLPIMGPVPGVTGAYIAAGHNCWGILWGPVTGLAM
SEVILDGEAKCVDLSAFRPSRFMTRAGRGRGRKKAGQAVGEQW*
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mRNA from alignment at P-wetherbeei_contig13857:2..1219+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13857.1.1 ID=mRNA_P-wetherbeei_contig13857.1.1|Name=mRNA_P-wetherbeei_contig13857.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1218bp|location=Sequence derived from alignment at P-wetherbeei_contig13857:2..1219+ (Phaeothamnion wetherbeei SAG_119_79)
CTGTGCGGGGTCGGCGGGTCGGACTACGGGTCCGCGGAGCGGCTAAAGGC CGGTGGCGACTGTGAATCGCCGTCGCTGATCAAGGTCCGTCTAAAGATCC CGTATGACTTACTGTGCGTATATAGATTGTGGGCTTGTAGCATGGACTGA AGGAGCAGAAACGGATCGAGGAGAAGAGAGATTGTGTTTCAAGAGAGCGC GCCAGTCTGGTGTGCTCGTTGGTGGCGAAAATGCTAGATGCGAGTGTGCC GTACTCTTCTTTCTTCCTTCGTCCCTCCACCCCGCCCCGCCACGACGTAA CTTGNNNNNNNNNNCACCGAGCACAACGTCTTTTTTCTCTCCCTGCCCCC CCCCCCCCCCCCAAAAAGAACCAGTTGCGCCGTTCTCTTGCTTGAATCCC CTTCACAAAGAAACGGCGCCCTAGCCAAATCCGAACGCCGTTTCCATTTT CTTATTCGTGCCCTCGCCCTTGCGAACCTGAACCCCTCTCTCATTTGACT CCACCGCCTCTGTTGTTGTTCGGTCGCTACAGGCAAACTCCAGCCGGGTC GGCGCGGCATGGGCATCCTTCAGCGAGATGTCCTCGCTGGGTGCGGCGGA GCCCGAGGTGGAGCAGGCGTGCATGCGACCGTGCCCGCCGGACGGGCTGC CGATCATGGGGCCCGTGCCGGGGGTGACGGGGGCGTATATCGCGGCCGGG CATAACTGCTGGGGTATCCTGGTGAGGAGCGCAGAGAGGACGAGCAAAGC GGCAGGCGGCGGGTCGCTTGGTTGGCGGCGGGTCGCTTGGCTGGCGGCGG GTCGCTTGGTTGGCGGCGGGTCGCTTGGCTGGCGGCGGGTCGCTTGGTTC CATGTGCTGCTGTTCTCTGTCTCTCGGTTGCGTTCTTGCTTCTCTTCCTC GGTCCCAAGTGCGTGTGCTGTTTCTGGCGCTTGCCTCACGCGCTGGTCCA TTGACCTCGGGACGCTTGGACCGGGCTTCATTTCTCAACCGCCGCATGTG CCGCCGCTGCCGCGAAAACCATTGTTTCCCGTCGTTTTGAACCGTCATTT TCGCTACAGTGGGGGCCAGTGACAGGGCTCGCCATGTCGGAGGTGATTCT CGACGGAGAGGCCAAGTGCGTCGACCTCTCGGCGTTCCGGCCGTCGCGGT TCATGACTCGGGCGGGCAGAGGCCGCGGCAGGAAGAAGGCCGGACAGGCT GTCGGGGAGCAGTGGTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13857:2..1219+

>mRNA_P-wetherbeei_contig13857.1.1 ID=mRNA_P-wetherbeei_contig13857.1.1|Name=mRNA_P-wetherbeei_contig13857.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=432bp|location=Sequence derived from alignment at P-wetherbeei_contig13857:2..1219+ (Phaeothamnion wetherbeei SAG_119_79)
CTGTGCGGGGTCGGCGGGTCGGACTACGGGTCCGCGGAGCGGCTAAAGGC
CGGTGGCGACTGTGAATCGCCGTCGCTGATCAAGGCAAACTCCAGCCGGG
TCGGCGCGGCATGGGCATCCTTCAGCGAGATGTCCTCGCTGGGTGCGGCG
GAGCCCGAGGTGGAGCAGGCGTGCATGCGACCGTGCCCGCCGGACGGGCT
GCCGATCATGGGGCCCGTGCCGGGGGTGACGGGGGCGTATATCGCGGCCG
GGCATAACTGCTGGGGTATCCTGTGGGGGCCAGTGACAGGGCTCGCCATG
TCGGAGGTGATTCTCGACGGAGAGGCCAAGTGCGTCGACCTCTCGGCGTT
CCGGCCGTCGCGGTTCATGACTCGGGCGGGCAGAGGCCGCGGCAGGAAGA
AGGCCGGACAGGCTGTCGGGGAGCAGTGGTAG
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