mRNA_P-wetherbeei_contig13820.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13820.1.1
Unique NamemRNA_P-wetherbeei_contig13820.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig13820.1.1 vs. uniprot
Match: A0A6H5KNJ4_9PHAE (G-patch domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNJ4_9PHAE)

HSP 1 Score: 193 bits (490), Expect = 9.160e-50
Identity = 159/453 (35.10%), Postives = 215/453 (47.46%), Query Frame = 1
Query:  232 LMASSSSARKKPERFHGAFEGGFSAGYYNTAGSAEGWAPSSFSSSRDRRAEAKPLRMEDFMDEEDGLGGGRLQARGEFDTLGATAAERARQRAGAEESASKGPIPGLAPLELMAPTGDSIGFQLLRASGWREGQGIGSRVRRKSRGAXXXXXXXGNDDELDDGVAVSLRKALGERRARDVFEGDSMAITFARDNNAALLAVPKPKIDLYGIGFDPFKNAPEFAAAAXXXXXXXXXXXXXXXXXXXVVAQRLSMQGKSSGPA------------VARGTHGFAMDEXXXXXXXXXXXXXXXXXXXXXXXYHNSVDVNTLDXXXXXXXXXXXXXXXXXXXXXXXXXXKDTTMSAALALATPEEKTPVRRTCATDNRLPLPGFIMGE-PAPPFRQWRPMNAPPQDWNCVHRFSAEEEAEMEWAAAAVGAVRVNEAERGGGSTLMAAQRGVALGEPS 1551
            + +S +SA K+P+RFHGAF GGFSAG+YN+ GSAEGW PS+FSSSRD+RA  K  R EDFMD+EDGL   +LQA+  FDTLG+TA E AR+ A  E  A+ G IPG AP EL+ P GD +G +LLR  GWREGQG+G RVRRK             DD  +D +    R  LGE+  R++   D   +TFA  N    +     K +L+G+G +PFK+APEF AA                     + Q     G + G A            V RG+HGF +D+                       Y  ++D    D                          +D  M A+   A           C +D RLP  GF++ + P    + W P   PP ++     F  + +  +E          ++ ++R GG+ L A+ R   LGEPS
Sbjct:    1 MSSSGTSASKRPDRFHGAFTGGFSAGFYNSVGSAEGWTPSAFSSSRDKRAAPKEQRPEDFMDDEDGLFTEQLQAKPAFDTLGSTADEVARKHA--EMEAAGGAIPGPAPSELIIPVGDPMGKKLLRTMGWREGQGVGKRVRRKXXXPAPAEA----DDSPEDVLPEQARAGLGEK-GRELL--DKEGLTFAPRNADVKMQHVLAKTNLHGVGHEPFKDAPEFGAARAGATGVRSVYSTED------IVQHPMDAGAAGGMAAGVSRRSLAAAVVGRGSHGFVLDDGEDDVYESGLGKEA---------YDQALDA---DGGRAAAHAGLPGSAKAWALSGAADDDEDEPMLASRRYAR----------CPSDGRLPPTGFVVAQRPDVHQKHWAPP-IPPANFRPTIEFEDDAKTPLE----------LSTSQRYGGAHLDASGRARLLGEPS 405          
BLAST of mRNA_P-wetherbeei_contig13820.1.1 vs. uniprot
Match: A0A7S2R5Z0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R5Z0_9STRA)

HSP 1 Score: 165 bits (417), Expect = 3.060e-42
Identity = 108/211 (51.18%), Postives = 130/211 (61.61%), Query Frame = 1
Query:  271 RFHGAFEGGFSAGYYNTAGSAEGWAPSSFSSSRDRRAEAKPLRMEDFMDEEDGLGGGRLQARGEFDTLGATAAERARQRAGAEESASKGPIPGLAPLELMAPTGDSIGFQLLRASGWREGQGIGSRVRRKSRGAXXXXXXXGNDDELDDGVAVSLRKALGERRARDVFEGDSMAITFARDNNAALLAVPKPKIDLYGIGFDPFKNAP-EFA 900
            RFHGAF GGFSAGYYNT GSAEG+ P +F SSR  RA+ + +R ED MDEEDGL G  + +  E+DTLGA A +RA+  A  E   S   IPG AP+ELM  T  SIG  LLR+ GWREGQGIG RVRRK+                    A SL +A     A    +G+   +TFA +N A+ L VP+ K DLYG+GFDP  +AP EFA
Sbjct:   34 RFHGAFTGGFSAGYYNTVGSAEGFTPGTFFSSRTSRAQVQQVRPEDLMDEEDGLLGKDVFSTKEYDTLGAGAKQRAQASAAREAKESTSAIPGPAPMELMVVTDHSIGKALLRSMGWREGQGIGPRVRRKTSAD-----------------AESLPEA-----ASSALQGE---VTFAPENTASHLRVPQGKDDLYGVGFDPLDHAPSEFA 219          
BLAST of mRNA_P-wetherbeei_contig13820.1.1 vs. uniprot
Match: A0A835ZFT9_9STRA (G-patch domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFT9_9STRA)

HSP 1 Score: 169 bits (427), Expect = 4.210e-41
Identity = 125/287 (43.55%), Postives = 147/287 (51.22%), Query Frame = 1
Query:  253 ARKKPERFHGAFEGGFSAGYYNTAGSAEGWAPSSFSSSRDRRAEAKPL--------------RMEDFMDEEDGLGGGRLQ----------ARGEFDTLGATAAERARQRAGAEESASKGP-IPGLAPLELMAPTGDSIGFQLLRASGWREGQGIGSRVRRK---------------SRGAXXXXXXXGNDDELDDGVAVSLRKAL-----------------------------GERRARDVFEGDSMAITFARDNNAALLAVPKPKIDLYGIGFDPFKNAPEFAAA 906
            A K+PERFHGAF GGFSAGY+NT G+AEGWAPS F SSRDRRA                   R EDFMDEEDGL G  LQ          A+ +FDT+G TAA  ARQ A   E+ SKG  IPG APLEL+ P+ D IG +LLRA GWREGQG+G RVRR+               + GA       G    L+D      + +L                                  R  F G    +TFA DN AA +AVP  K D YG+G+DP+ +APE AAA
Sbjct:    5 AAKRPERFHGAFTGGFSAGYFNTVGTAEGWAPSKFVSSRDRRAXXXXXXXXXXXXXXXXXXQRPEDFMDEEDGLLGRTLQXXXXXXXXXXAKEDFDTMGQTAAAAARQHA---EAISKGSAIPGPAPLELIGPSSDPIGRRLLRAMGWREGQGVGRRVRRRPXXXXXXXXAPRTGETEGAAPKRPRLGPLQHLEDECQQQPQASLXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAPAAVRARFAGGP--VTFAPDNAAAAVAVPPAKADAYGVGYDPYAHAPELAAA 286          
BLAST of mRNA_P-wetherbeei_contig13820.1.1 vs. uniprot
Match: K8YQK3_NANGC (G patch domain-containing protein 1 (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YQK3_NANGC)

HSP 1 Score: 154 bits (388), Expect = 3.510e-39
Identity = 104/216 (48.15%), Postives = 130/216 (60.19%), Query Frame = 1
Query:  271 RFHGAFEGGFSAGYYNTAGSAEGWAPSSFSSSRDRRAEAKPLRM--EDFMDEEDGLGGGRLQARGEFDTLGATAAERARQRAGAEESASKGPIPGLAPL-ELMAPTGDSIGFQLLRASGWREGQGIGSRVRR--KSRGAXXXXXXXGNDDELDDGVAVSLRKALGERRARDVFEGDSMAITFARDNNAALLAVPKPKIDLYGIGFDPFKNAPEFAA 903
            RFHGAF GGFSAGYYN+ GS EGW PS+F SSRD RA ++P R   EDFMDEEDGL G  L  +  +DTLG ++ +  R+    E+ A    IPGL  + EL+ PT  +IG +LL+  GW+EG G+GSR RR  K RG        G ++ +DD VA      L E    D        ITFAR     L  +P+PK D +G+GFDP K+APE AA
Sbjct:   29 RFHGAFTGGFSAGYYNSVGSQEGWQPSTFKSSRDNRASSRPSRQRPEDFMDEEDGLLGRDLHTQLPYDTLGVSSKQLLRKEV--EKEAVGSSIPGLGMVDELLVPTEVAIGKKLLQMMGWKEGVGVGSRQRRPRKKRGKDSGEGEAGVEEAVDDDVAF-----LPEHLRDDSTLVQQGKITFARPT-LGLTLLPRPKNDRHGLGFDPEKDAPELAA 236          
BLAST of mRNA_P-wetherbeei_contig13820.1.1 vs. uniprot
Match: A0A4D9D953_9STRA (G-patch domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D953_9STRA)

HSP 1 Score: 158 bits (399), Expect = 1.730e-37
Identity = 106/216 (49.07%), Postives = 132/216 (61.11%), Query Frame = 1
Query:  271 RFHGAFEGGFSAGYYNTAGSAEGWAPSSFSSSRDRRAEAKPL--RMEDFMDEEDGLGGGRLQARGEFDTLGATAAERARQRAGAEESASKGPIPGLAPL-ELMAPTGDSIGFQLLRASGWREGQGIGSRVRR--KSRGAXXXXXXXGNDDELDDGVAVSLRKALGERRARDVFEGDSMAITFARDNNAALLAVPKPKIDLYGIGFDPFKNAPEFAA 903
            RFHGAF GGFSAGYYN+ GS EGW PS+F SSRD RA ++P   R EDFMDEEDGL G  LQ +  +DTLG ++ +  R+    E+ A+   IPGL  + EL+ PT  +IG +LL+  GW+EG G+GSR RR  K RG        G ++ +DD VA      L E    D        ITFAR     L  +P+PK D YG+GFDP K+APE AA
Sbjct:   21 RFHGAFTGGFSAGYYNSVGSQEGWQPSTFKSSRDNRASSRPSGQRPEDFMDEEDGLLGRDLQTQLPYDTLGVSSKQLLRKEV--EKEAAGSSIPGLGMVDELLVPTEVAIGKKLLQMMGWKEGVGVGSRQRRPRKKRGKDSGEGEAGVEEAVDDDVAF-----LPEHLRDDSTLVQQGKITFARPT-LGLTLLPRPKNDRYGLGFDPEKDAPELAA 228          
BLAST of mRNA_P-wetherbeei_contig13820.1.1 vs. uniprot
Match: D7FJ14_ECTSI (RNA binding protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ14_ECTSI)

HSP 1 Score: 151 bits (382), Expect = 1.800e-35
Identity = 142/421 (33.73%), Postives = 195/421 (46.32%), Query Frame = 1
Query:  325 GSAEGWAPSSFSSSRDRRAEAKPLRMEDFMDEEDGLGGGRLQARGEFDTLGATAAERARQRAGAEESASKGPIPGLAPLELMAPTGDSIGFQLLRASGWREGQGIGSRVRRKSRGAXXXXXXXGNDDELDDGVAVSLRKALGERRARDVFEGDSMAITFARDNNAALLAVPKPKIDLYGIGFDPFKNAPEFAAAAXXXXXXXXXXXXXXXXXXXVVAQRLS-----MQGKSSGPAVA-RGTHGFAMDEXXXXXXXXXXXXXXXXXXXXXXXYHNSVDVNTLDXXXXXXXXXXXXXXXXXXXXXXXXXXKDTTMSAALALATPEEKTPVRRT-----CATDNRLPLPGFIMGE-PAPPFRQWRPMNAPPQDWNCVHRFSAEEEAEMEWAAAAVGAVRVNEAERGGGSTLMAAQRGVALGEPS 1551
            GSAEGW PS+FSSSRD+RA  K  R EDFMD+EDGL   +LQA+  FDTLG+TA E AR+ A  E  A+ G IPG AP EL+ P GD +G +LLR  GWREGQG+G+RVRRK    XX       DD  +D +    R  LG +  R++   D   +TFA  N    +     K +L+G+G +PFK+APEF AA                    + A         +  +S   AV  RG+HGF +D+                       Y + +D    D                          K   +S A   A  +E  P+  +     C +D RLP  GF++ + P    + W P   PP ++     F  + +  +E          ++ ++R GG+ L A+ R   LGEPS
Sbjct:   52 GSAEGWTPSTFSSSRDKRAAPKEQRPEDFMDDEDGLLTEQLQAKPAFDTLGSTADEVARKHA--EMEATGGAIPGPAPSELIIPVGDPMGKKLLRTMGWREGQGVGNRVRRKXXXXXXAEA----DDSPEDELPEQARAGLGGK-GRELL--DKEGLTFAPTNADVKMQSVLAKTNLHGVGHEPFKDAPEFGAARAGATGVRSVYSTEDIVQHPMDAGAAGGIVAGVSRRSLAAAVVDRGSHGFVLDDDEDDV------------------YESGLDKEAYDQALDADGGRAAAHAGLSGSA------KAWALSGA---ADDDEDEPLLASRRYARCPSDGRLPPTGFVVAQRPDVQQKHWAPP-IPPANFRPTVEFEDDAKTPLE----------LSTSQRYGGAHLDASGRARLLGEPS 425          
BLAST of mRNA_P-wetherbeei_contig13820.1.1 vs. uniprot
Match: G4YN89_PHYSP (G-patch domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YN89_PHYSP)

HSP 1 Score: 147 bits (371), Expect = 3.050e-35
Identity = 99/216 (45.83%), Postives = 125/216 (57.87%), Query Frame = 1
Query:  271 RFHGAFEGGFSAGYYNTAGSAEGWAPSSFSSSRDRRAEAKPLRMEDFMDEEDG-LGGGRLQARGEFDTLGATAAERARQRAGAEESAS-KGPIPGLA-PLELMAPTGDSIGFQLLRASGWREGQGIGSRVRRKSRGAXXXXXXXGNDDELDDGVAVSLRKALGER---RARDVFEGDSMAITFARDNNAALLAVPKPKIDLYGIGFDPFKNAPEFA 900
            RFHGAF GGFSAGYYN+ GS EGW P +FSSSR  R E    R EDFMDEED  L G RL+    +DTL   A  R +Q+  A+++AS  G IPG A P + + P  DSIG +LL+  GW+EG GIG RVRR+             + E  + + +  + A  E+   +ARD  E +       R       A PKPK+D YG GFDP+ NAPEF+
Sbjct:   19 RFHGAFTGGFSAGYYNSVGSEEGWTPRTFSSSRGNRMERVQQRAEDFMDEEDDPLLGKRLETTERYDTLQTGAKRRLQQQQQADQAASGAGAIPGFALPDDWVLPVNDSIGAKLLKQMGWKEGHGIGQRVRRRK--------FLEEEKEAVENLKLLTQYAQEEKTEMKARDGAEEEEEVCVPPRKVFDVQKAFPKPKLDRYGAGFDPYTNAPEFS 226          
BLAST of mRNA_P-wetherbeei_contig13820.1.1 vs. uniprot
Match: A0A8J5WN33_ZIZPA (Uncharacterized protein n=1 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5WN33_ZIZPA)

HSP 1 Score: 142 bits (357), Expect = 3.850e-32
Identity = 93/218 (42.66%), Postives = 120/218 (55.05%), Query Frame = 1
Query:  271 RFHGAFEGGFSAGYYNTAGSAEGWAPSSFSSSRDRRAEAKPLRMEDFMDEED--GLGGGRLQARGEFDTLGATAAERARQRAGAEESASKGPIPGLAPLELMAPTGDSIGFQLLRASGWREGQGIGS-------RVRRKSRGAXXXXXXXGNDDELDDGVAVSLRKALGERRARDVFEGDSMAITFARDNNAALLAVPKPKIDLYGIGFDPFKNAPEF 897
            RFHGAF GGFSAGYYNT G+ EGW P +F+SSR  R E K   +  F+DEED  G+GG  L+   ++DT G+TA E AR++A  E+      IPG  P EL+ P   SIG +LL   GW +G+ I           RR++R A        NDDE    + +   K+  +   +  FE        A  N A    V  PK DL+G+GFDPFK+APEF
Sbjct:   56 RFHGAFTGGFSAGYYNTVGTKEGWTPQTFTSSRKNRTEVKKQSIYSFLDEEDIKGMGGNTLETTQQYDTFGSTATEYARKQASKEQKERPSAIPGPIPDELVVPATTSIGMKLLMKMGWHKGRSIRDAHADSLYESRREARKAFLALSGVSNDDEK---LQIDSHKSGKDESVKGSFEE-----IHASGNTAVY--VLHPKQDLHGLGFDPFKHAPEF 263          
BLAST of mRNA_P-wetherbeei_contig13820.1.1 vs. uniprot
Match: D0P3Y0_PHYIT (G-patch domain-containing protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0P3Y0_PHYIT)

HSP 1 Score: 138 bits (347), Expect = 4.720e-32
Identity = 89/212 (41.98%), Postives = 124/212 (58.49%), Query Frame = 1
Query:  271 RFHGAFEGGFSAGYYNTAGSAEGWAPSSFSSSRDRRAEAKPLRMEDFMDEEDG-LGGGRLQARGEFDTLGATAAERARQRAGAEESASKGPIPGLA-PLELMAPTGDSIGFQLLRASGWREGQGIGSRVRRKSRGAXXXXXXXGNDDELDDGVAVSLRKALGERRARDVFEGDSMAITFARDNNAALLAVPKPKIDLYGIGFDPFKNAPEFA 900
            RFHGAF GGFSAGYYN+ GS EGW P++FSSSRD R+     R EDFMDEED  L G RL+    +DTL   A  R +Q+    E+A    IPG + P + + P  DSIG +LL+  GW+EG GIG RVR++             D++  + V + +  +  E+   +  + + + +   R       + PKPK+D YG GFDP+++APEF+
Sbjct:   19 RFHGAFTGGFSAGYYNSVGSQEGWTPTTFSSSRDNRSSRVEQRPEDFMDEEDDPLLGKRLETTEHYDTLQTGAKRRLQQQPDRTEAA----IPGFSLPEDWVLPVNDSIGAKLLKQMGWKEGHGIGQRVRKRKF----------QDEKDTEQVKLLMLDSSEEKTETEPLQEEEVYVP-PRKMFDVQKSFPKPKLDRYGAGFDPYRDAPEFS 215          
BLAST of mRNA_P-wetherbeei_contig13820.1.1 vs. uniprot
Match: UPI001F5DA218 (LOW QUALITY PROTEIN: G patch domain-containing protein TGH homolog n=2 Tax=Lolium rigidum TaxID=89674 RepID=UPI001F5DA218)

HSP 1 Score: 141 bits (356), Expect = 5.760e-32
Identity = 95/218 (43.58%), Postives = 126/218 (57.80%), Query Frame = 1
Query:  271 RFHGAFEGGFSAGYYNTAGSAEGWAPSSFSSSRDRRAEAKPLRMEDFMDEED--GLGGGRLQARGEFDTLGATAAERARQRAGAEESASKGPIPGLAPLELMAPTGDSIGFQLLRASGWREGQGIGS-------RVRRKSRGAXXXXXXXGNDDELDDGVAVSLRKALGERRARDVFEGDSMAITFARDNNAALLAVPKPKIDLYGIGFDPFKNAPEF 897
            RFHGAF GGFSAG+YNTAGS EGW P +F+SSR  RAE K   +  F+DEED   +GG  L+   ++DT G TAAE+AR++A  E+      IPG  P EL+ P   SIG +LL   GWR+G+ I           RR++R A        N+++ D    VS +K+  +    + F  D M     R +    + V  PK DL+G+GFDPFK+APEF
Sbjct:   55 RFHGAFTGGFSAGFYNTAGSKEGWVPQTFTSSRKSRAEHKKQSIYSFLDEEDIKDMGGNALETSQQYDTFGFTAAEQARKQASKEQIERPSAIPGPVPDELVVPATTSIGVKLLMKMGWRQGRTIKDAHADSLYESRREARKAFLALSGISNNEDQD---KVSSQKSRVDENVAESF--DDM-----RASGNTPVYVLHPKEDLHGLGFDPFKHAPEF 262          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13820.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KNJ4_9PHAE9.160e-5035.10G-patch domain-containing protein n=1 Tax=Ectocarp... [more]
A0A7S2R5Z0_9STRA3.060e-4251.18Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A835ZFT9_9STRA4.210e-4143.55G-patch domain-containing protein n=1 Tax=Tribonem... [more]
K8YQK3_NANGC3.510e-3948.15G patch domain-containing protein 1 (Fragment) n=1... [more]
A0A4D9D953_9STRA1.730e-3749.07G-patch domain-containing protein n=3 Tax=Monodops... [more]
D7FJ14_ECTSI1.800e-3533.73RNA binding protein, putative n=1 Tax=Ectocarpus s... [more]
G4YN89_PHYSP3.050e-3545.83G-patch domain-containing protein n=1 Tax=Phytopht... [more]
A0A8J5WN33_ZIZPA3.850e-3242.66Uncharacterized protein n=1 Tax=Zizania palustris ... [more]
D0P3Y0_PHYIT4.720e-3241.98G-patch domain-containing protein n=1 Tax=Phytopht... [more]
UPI001F5DA2185.760e-3243.58LOW QUALITY PROTEIN: G patch domain-containing pro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13820contigP-wetherbeei_contig13820:218..1789 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FJ14
Preferred nameGPATCH1
PFAMsDUF1604,G-patch
Model size1572
Max annot lvl2759|Eukaryota
KEGG koko:K13123,ko:K19842
KEGG Pathwayko04011,map04011
KEGG ModuleM00355
Hectar predicted targeting categoryother localisation
GOsGO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0032991,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045292,GO:0046483,GO:0071013,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1902494,GO:1990904
Exons1
Evalue7.26e-37
EggNOG OGsKOG2138@1|root,KOG2138@2759|Eukaryota
Ec32 ortholog descriptionRNA binding protein, homologue of TOUGH
Ec32 orthologEc-07_004810.1
DescriptionmRNA processing
Cds size1338
COG categoryS
BRITEko00000,ko00001,ko00002,ko03041
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185998.577969-UTR-P-wetherbeei_contig13820:217..4511683185998.577969-UTR-P-wetherbeei_contig13820:217..451Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig13820 218..451 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185998.5895827-CDS-P-wetherbeei_contig13820:451..17891683185998.5895827-CDS-P-wetherbeei_contig13820:451..1789Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13820 452..1789 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13820.1.1prot_P-wetherbeei_contig13820.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13820 452..1789 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13820.1.1

>prot_P-wetherbeei_contig13820.1.1 ID=prot_P-wetherbeei_contig13820.1.1|Name=mRNA_P-wetherbeei_contig13820.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=446bp
MASSSSARKKPERFHGAFEGGFSAGYYNTAGSAEGWAPSSFSSSRDRRAE
AKPLRMEDFMDEEDGLGGGRLQARGEFDTLGATAAERARQRAGAEESASK
GPIPGLAPLELMAPTGDSIGFQLLRASGWREGQGIGSRVRRKSRGAAAAA
GAGGNDDELDDGVAVSLRKALGERRARDVFEGDSMAITFARDNNAALLAV
PKPKIDLYGIGFDPFKNAPEFAAAARASAAAAAAAAGTGAGAGAVVAQRL
SMQGKSSGPAVARGTHGFAMDEDEDDVYGDGNGGGDGGGGGGSGGYHNSV
DVNTLDDDEDVLEGFGGGGSGRARSRIGGGGSKDTTMSAALALATPEEKT
PVRRTCATDNRLPLPGFIMGEPAPPFRQWRPMNAPPQDWNCVHRFSAEEE
AEMEWAAAAVGAVRVNEAERGGGSTLMAAQRGVALGEPSGSARGPR
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mRNA from alignment at P-wetherbeei_contig13820:218..1789+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13820.1.1 ID=mRNA_P-wetherbeei_contig13820.1.1|Name=mRNA_P-wetherbeei_contig13820.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1572bp|location=Sequence derived from alignment at P-wetherbeei_contig13820:218..1789+ (Phaeothamnion wetherbeei SAG_119_79)
AGGGGTTATTAAAACCCCGGGGAACAGAAGCGGAAGCTATCTCAACCCAG GCCGTTCGTTTTATTCAAAGTGCTCTGGGATTGCGGTGCGAACGCCCGCG AGAAGCGCTTTTCACGTTCCTGAAAGTGATACTTTCTGCTTTCCAGACCT GGTAAGCAGCTCTGATCCAGGTGGAAGCGCCCCGCGAAAAAGGCCCTCTT CGCGCTCTTTGGTGCGTTTCTCTCTTGTGCTCTCATGGCTTCATCATCTT CAGCTCGCAAGAAGCCCGAGCGCTTCCACGGCGCCTTTGAGGGCGGCTTC TCGGCAGGCTACTACAACACGGCCGGGAGTGCAGAAGGTTGGGCCCCATC CTCCTTTTCGTCCTCTCGCGACCGCCGCGCCGAGGCCAAGCCGCTGCGTA TGGAGGACTTTATGGACGAGGAGGACGGGCTCGGCGGTGGTCGCTTGCAG GCTCGTGGCGAGTTCGACACGCTCGGCGCGACGGCGGCAGAGCGCGCGAG ACAACGTGCCGGAGCAGAAGAAAGCGCTTCGAAGGGCCCCATCCCTGGCC TGGCGCCGCTCGAACTCATGGCTCCGACGGGCGACTCGATCGGCTTCCAG CTCCTCCGCGCTTCGGGCTGGCGGGAGGGCCAGGGCATCGGCAGCCGCGT GCGGCGAAAGTCGCGCGGAGCTGCTGCCGCCGCTGGCGCTGGCGGCAACG ACGACGAGCTGGACGATGGAGTGGCAGTCTCCTTGCGCAAGGCGCTGGGG GAACGCCGCGCCCGCGACGTCTTCGAGGGCGATTCCATGGCCATCACCTT CGCTCGCGATAATAATGCGGCGCTTTTGGCCGTCCCGAAGCCAAAAATCG ACCTTTACGGAATCGGCTTCGACCCGTTCAAAAACGCGCCCGAGTTCGCC GCTGCTGCGAGGGCATCCGCCGCCGCCGCCGCAGCAGCAGCAGGGACCGG CGCCGGCGCCGGCGCCGTCGTGGCACAACGGCTCTCCATGCAGGGCAAGT CGTCCGGCCCGGCGGTCGCCCGAGGCACCCACGGCTTTGCCATGGACGAG GACGAGGACGACGTCTACGGGGACGGCAACGGCGGCGGCGATGGCGGCGG CGGCGGCGGCAGCGGCGGTTACCACAATTCTGTGGACGTGAATACCCTAG ACGACGACGAGGACGTGCTGGAAGGTTTCGGCGGCGGCGGCAGCGGCCGC GCACGCAGCCGCATCGGCGGCGGCGGCTCCAAGGACACCACAATGTCGGC GGCATTGGCGCTGGCGACGCCGGAGGAAAAAACCCCGGTCCGCCGCACCT GCGCGACGGACAACCGCCTGCCGCTGCCGGGCTTCATCATGGGCGAGCCA GCGCCACCGTTCCGGCAATGGCGGCCGATGAACGCGCCGCCGCAGGACTG GAACTGCGTGCACCGCTTCTCCGCCGAGGAAGAGGCGGAGATGGAGTGGG CGGCGGCCGCCGTGGGCGCAGTCCGAGTAAACGAGGCTGAAAGAGGCGGC GGCAGCACCTTGATGGCGGCGCAACGTGGGGTGGCACTCGGCGAGCCGTC GGGCAGCGCCCGTGGACCGCGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13820:218..1789+

>mRNA_P-wetherbeei_contig13820.1.1 ID=mRNA_P-wetherbeei_contig13820.1.1|Name=mRNA_P-wetherbeei_contig13820.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1338bp|location=Sequence derived from alignment at P-wetherbeei_contig13820:218..1789+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCTTCATCATCTTCAGCTCGCAAGAAGCCCGAGCGCTTCCACGGCGC
CTTTGAGGGCGGCTTCTCGGCAGGCTACTACAACACGGCCGGGAGTGCAG
AAGGTTGGGCCCCATCCTCCTTTTCGTCCTCTCGCGACCGCCGCGCCGAG
GCCAAGCCGCTGCGTATGGAGGACTTTATGGACGAGGAGGACGGGCTCGG
CGGTGGTCGCTTGCAGGCTCGTGGCGAGTTCGACACGCTCGGCGCGACGG
CGGCAGAGCGCGCGAGACAACGTGCCGGAGCAGAAGAAAGCGCTTCGAAG
GGCCCCATCCCTGGCCTGGCGCCGCTCGAACTCATGGCTCCGACGGGCGA
CTCGATCGGCTTCCAGCTCCTCCGCGCTTCGGGCTGGCGGGAGGGCCAGG
GCATCGGCAGCCGCGTGCGGCGAAAGTCGCGCGGAGCTGCTGCCGCCGCT
GGCGCTGGCGGCAACGACGACGAGCTGGACGATGGAGTGGCAGTCTCCTT
GCGCAAGGCGCTGGGGGAACGCCGCGCCCGCGACGTCTTCGAGGGCGATT
CCATGGCCATCACCTTCGCTCGCGATAATAATGCGGCGCTTTTGGCCGTC
CCGAAGCCAAAAATCGACCTTTACGGAATCGGCTTCGACCCGTTCAAAAA
CGCGCCCGAGTTCGCCGCTGCTGCGAGGGCATCCGCCGCCGCCGCCGCAG
CAGCAGCAGGGACCGGCGCCGGCGCCGGCGCCGTCGTGGCACAACGGCTC
TCCATGCAGGGCAAGTCGTCCGGCCCGGCGGTCGCCCGAGGCACCCACGG
CTTTGCCATGGACGAGGACGAGGACGACGTCTACGGGGACGGCAACGGCG
GCGGCGATGGCGGCGGCGGCGGCGGCAGCGGCGGTTACCACAATTCTGTG
GACGTGAATACCCTAGACGACGACGAGGACGTGCTGGAAGGTTTCGGCGG
CGGCGGCAGCGGCCGCGCACGCAGCCGCATCGGCGGCGGCGGCTCCAAGG
ACACCACAATGTCGGCGGCATTGGCGCTGGCGACGCCGGAGGAAAAAACC
CCGGTCCGCCGCACCTGCGCGACGGACAACCGCCTGCCGCTGCCGGGCTT
CATCATGGGCGAGCCAGCGCCACCGTTCCGGCAATGGCGGCCGATGAACG
CGCCGCCGCAGGACTGGAACTGCGTGCACCGCTTCTCCGCCGAGGAAGAG
GCGGAGATGGAGTGGGCGGCGGCCGCCGTGGGCGCAGTCCGAGTAAACGA
GGCTGAAAGAGGCGGCGGCAGCACCTTGATGGCGGCGCAACGTGGGGTGG
CACTCGGCGAGCCGTCGGGCAGCGCCCGTGGACCGCGG
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