mRNA_P-wetherbeei_contig13816.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13816.1.1
Unique NamemRNA_P-wetherbeei_contig13816.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig13816.1.1 vs. uniprot
Match: D8LP16_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LP16_ECTSI)

HSP 1 Score: 157 bits (397), Expect = 6.910e-42
Identity = 84/153 (54.90%), Postives = 105/153 (68.63%), Query Frame = 1
Query:    1 QGIGQLFPWNAFISATEYFGRRLCGTAYADNFENCFSVGYNLSGLAGLALAVRCQRLLRPRSRVLLPLALTALAFLVCFMLVLAPAVGGDALFLVTMVCIVASALAVAFLQSALFGLAGRFPPLYTQGMMAGQGIAGLVVALSSLLTTMAGPD 459
            QG+GQLFPWN FI+A +YF RRLCG+++ +NFEN FSVGYNL+ + GL LA+R Q       R++  LA++   F+ C + VLA  V G  LF  TM  IV S L  A LQ  +F +A  FPP YTQ MMAGQG+AGL VAL+ L TT+AGPD
Sbjct:   19 QGVGQLFPWNVFINAEDYFRRRLCGSSFENNFENFFSVGYNLAAILGLLLALRYQEQWDLTGRIMGSLAVSLGTFVACGIFVLAEGVNGTLLFFCTMGLIVVSGLCTAVLQGGIFAMASAFPPRYTQAMMAGQGLAGLAVALAGLFTTLAGPD 171          
BLAST of mRNA_P-wetherbeei_contig13816.1.1 vs. uniprot
Match: A0A7S3GPH9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GPH9_9STRA)

HSP 1 Score: 149 bits (375), Expect = 4.610e-40
Identity = 93/213 (43.66%), Postives = 123/213 (57.75%), Query Frame = 1
Query:    1 QGIGQLFPWNAFISATEYFGRRLCGTAYADNFENCFSVGYNLSGLAGLALAVRCQRLLRPRSRVLLPLALTALAFLVCFMLVLAPAVGGDALFLVTMVCIVASALAVAFLQSALFGLAGRFPPLYTQGMMAGQGIAGLVVALSSLLTTM------------AGPDATCLPHDTVDGSTLAYFGIAFATLVLCAGAFIFLERLPVAIYYLGAAE 603
            +G+G LFPWNAFI+A+ Y+G R CGT+    FEN FS+ Y LS   GLAL++  Q+ L  RS+++ PL   ++ FLV  +LV    +    LF +T++      L  A L   LFGL   FPP+YT  +M GQG+AGL VA+SSLLT++            AG D  C    T+D S LAYF IA   L  C  AF+ L +   A YY+G AE
Sbjct:   45 EGVGNLFPWNAFITASNYYGARFCGTSIETTFENFFSITYTLSQTIGLALSIVYQKKLSLRSKIIYPLMCYSVVFLVNTILVTVQDIDPTLLFWLTLISCCLCGLFGAVLSGGLFGLGAMFPPVYTAALMNGQGVAGLTVAVSSLLTSLGTSAVDSCSDDNAGDDGDC--PQTLDYSALAYFIIATLILGTCIFAFLGLNQFQYARYYIGKAE 255          
BLAST of mRNA_P-wetherbeei_contig13816.1.1 vs. uniprot
Match: A0A4V1J034_ROZAC (Uncharacterized protein n=1 Tax=Rozella allomycis (strain CSF55) TaxID=988480 RepID=A0A4V1J034_ROZAC)

HSP 1 Score: 127 bits (320), Expect = 1.460e-31
Identity = 77/205 (37.56%), Postives = 119/205 (58.05%), Query Frame = 1
Query:    1 QGIGQLFPWNAFISATEYFGRRLCGTAYADNFENCFSVGYNLSGLAGLALAV--RCQRLLRPRSRVLLPLALTALAFLVCFMLVLAPAVGGDALFLVTMVCIVASALAVAFLQSALFGLAGRFPPLYTQGMMAGQGIAGLVVALSSLLTTMAGPDATCLPHD--TVDGSTLAYFGIAFATLVLCAGAFIFLERLPVAIYYLGAAE 603
            QGIG LFPWN F++A+EYF  R  G+++ADNF++ F++ + L   + +AL +  +         RV+  L +    FL+  ML    +   D+ F +TM  I+   ++   LQ  LFGLAG FPP+YTQ +M GQGIAGLVV LS++ TT+   +     HD  +V+ S   YF ++   +++   +F+ L R P+  YY  A++
Sbjct:   19 QGIGMLFPWNVFMNASEYFRLRFIGSSWADNFQSYFAIAFMLCNCSFIALLMYTKVDHKFSLPVRVVSGLVMNGFVFLLSTMLTAFDSFAPDSFFFITMGSILLCGISTGILQKGLFGLAGEFPPIYTQAIMNGQGIAGLVVTLSAIFTTLLSSNDY---HDVKSVNQSAFLYFLVSLLVILISCASFVLLTRAPIYRYYTLASK 220          
BLAST of mRNA_P-wetherbeei_contig13816.1.1 vs. uniprot
Match: A0A4P9ZX81_9FUNG (Nucleoside transporter-domain-containing protein (Fragment) n=1 Tax=Dimargaris cristalligena TaxID=215637 RepID=A0A4P9ZX81_9FUNG)

HSP 1 Score: 115 bits (289), Expect = 2.670e-27
Identity = 67/190 (35.26%), Postives = 108/190 (56.84%), Query Frame = 1
Query:    4 GIGQLFPWNAFISATEYFGRRLCGTAYADNFENCFSVGYNLSGLAGLALAVRCQRLLRPRSRVLLPLALTALAFLVCFMLVLAPAVGGDALFLVTMVCIVASALAVAFLQSALFGLAGRFPPLYTQGMMAGQGIAGLVVALSSLLTTMAGPDATCLPHDTVDGSTLAYFGIAFATLVLCAGAFIFLERLP 573
            G+  L PWN FI+A+E+F  +  G+ Y  NF+N FS  Y L+ L  +A+ +  Q  ++PR  +L+ LA+  + F+   +     ++ G   F +T+  +   A++ + +Q ALF L  RFPPLY QG+++GQ +AG+VV++  L+T  +    T    D +     AYF IA    +L  G F+ L+RLP
Sbjct:    2 GLALLLPWNVFITASEFFRVKFAGSPYQMNFQNWFSTSYTLTNLVVIAVCISQQHRIKPRPVILITLAVNVVIFMCMTIFTRIASLQGTTFFGLTLAMLTLGAMSSSLMQCALFALVSRFPPLYIQGVLSGQAVAGVVVSIVQLVTAAS----TLRSQDQL--RAFAYFLIASVVCILVLGLFVVLQRLP 185          
BLAST of mRNA_P-wetherbeei_contig13816.1.1 vs. uniprot
Match: A0A4P9XH85_9FUNG (Nucleoside transporter-domain-containing protein n=1 Tax=Thamnocephalis sphaerospora TaxID=78915 RepID=A0A4P9XH85_9FUNG)

HSP 1 Score: 115 bits (289), Expect = 8.790e-27
Identity = 73/206 (35.44%), Postives = 109/206 (52.91%), Query Frame = 1
Query:    4 GIGQLFPWNAFISATEYFGRRLCGTAYADNFENCFSVGYNLSGLAGLALAVRCQRLLRPRSRVLLPLALTALAFLVCFMLVLAPAVGGDALFLVTMVCIVASALAVAFLQSALFGLAGRFPPLYTQGMMAGQGIAGLVVALSSLLTTMAGPDATCLPHDTVDGSTLA-----------YFGIAFATLVLCAGAFIFLERLPVAIYY 588
            G+ QL PWN F++A+EYF     G+A+ DNF N FS GYN +GLAG  LAV   R       ++    +   AF +  ++ L  A+G D  F + ++ I  + +  A+LQS  F LA  FPP+YTQ +M+GQG+AGL  +L  L   +  P  +    D  DG+ L            YF +A   +++    +I L +LP+  +Y
Sbjct:   46 GLSQLLPWNVFMTASEYFRLSFQGSAFVDNFANYFSGGYNFAGLAGTVLAVYSLRTASKSRWIIYSSLVNVAAFAIVAVVALTDALGPDTFFALALLLISITGVCTAYLQSGGFALASLFPPIYTQAIMSGQGVAGLAPSLIQLFNALTVPLDS---EDPYDGALLESRADARWRAFLYFVLALIAILVSLAGYIQLRQLPIYKHY 248          
BLAST of mRNA_P-wetherbeei_contig13816.1.1 vs. uniprot
Match: A0A058Z4U7_FONAL (Uncharacterized protein n=1 Tax=Fonticula alba TaxID=691883 RepID=A0A058Z4U7_FONAL)

HSP 1 Score: 115 bits (287), Expect = 2.140e-26
Identity = 72/196 (36.73%), Postives = 109/196 (55.61%), Query Frame = 1
Query:    4 GIGQLFPWNAFISATEYFGRRLCGTAYADNFENCFSVGYNLSGLAGLALAVRCQRLLRPRSRVLLPLALTALAFLVCFMLVLAPAVGGDALFLVTMVCIVASALAVAFLQSALFGLAGRFPPLYTQGMMAGQGIAGLVVALSSLLTTM-AGPDATCLPHDTVDGSTLAYFGIAFATLVLCAGAFIFLERLPVAIYY 588
            GIG LFPWN F++AT ++G R  G+ ++DNF N FS+ YNLS +  + +       L PR  V   L   A AF+V   LV    +     F++T++ +V    + AF QS +F +   FP  YT  +M GQG+AG+VV++S LLT + + P+A      + + S L YF +A   L+ C  +F  L R+ +  Y+
Sbjct:   94 GIGMLFPWNVFVNATSFYGLRFAGSPFSDNFVNFFSITYNLSNMILIVVVALLVSRLTPRGSVFGALMAMAGAFVVQTALVYVE-MDPTLFFVITLLLVVVCGGSGAFFQSGIFAITASFPGKYTSAIMIGQGVAGIVVSISQLLTQLISDPNAGSADDGSAELSALLYFLVAVFLLIACIFSFATLPRMALFTYF 288          
BLAST of mRNA_P-wetherbeei_contig13816.1.1 vs. uniprot
Match: A0A1Y1Z722_9FUNG (Uncharacterized protein n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1Z722_9FUNG)

HSP 1 Score: 112 bits (281), Expect = 8.910e-26
Identity = 69/200 (34.50%), Postives = 108/200 (54.00%), Query Frame = 1
Query:    1 QGIGQLFPWNAFISATEYFGRRLCGTAYADNFENCFSVGYNLSGLAGLALAVRCQRLLRPRSRVLLPLALTALAFLVCFMLVLAPAVGGDALFLVTMVCIVASALAVAFLQSALFGLAGRFPPLYTQGMMAGQGIAGLVVALSSLLTTMAGPDATCLPH--DTVDGSTLAYFGIAFATLVLCAGAFIFLERLPVAIYYLG 594
            QG   L PWN FI+A+EYF  +  G+AYA+NF+N FS+ +  S L  L  A+  Q+      R++  L    L F VC  LV+ P +  DA F + M  +V S    ++LQ+A+FGL   F P+Y Q +M+GQG  G  VA + +++ +A  ++    +  D +      YF  +    V+  G++  LER P+  +Y+ 
Sbjct:   49 QGAAMLLPWNVFITASEYFHLKFQGSAYANNFQNYFSICFMTSNLGFLTWALVTQKEANFPRRIVSSLITNVLIFAVCIYLVVNPHITPDASFYLVMALLVCSGATTSYLQNAVFGLVSDFAPIYMQAVMSGQGFVGTSVAATQIISAIAAKNSNNSGNTDDALQYRVYMYFICSLLVAVISLGSYYMLERQPLYEFYIA 248          
BLAST of mRNA_P-wetherbeei_contig13816.1.1 vs. uniprot
Match: A0A4P9XXE1_9FUNG (Nucleoside transporter-domain-containing protein n=1 Tax=Thamnocephalis sphaerospora TaxID=78915 RepID=A0A4P9XXE1_9FUNG)

HSP 1 Score: 111 bits (277), Expect = 2.880e-25
Identity = 65/196 (33.16%), Postives = 106/196 (54.08%), Query Frame = 1
Query:    1 QGIGQLFPWNAFISATEYFGRRLCGTAYADNFENCFSVGYNLSGLAGLALAVRCQRLLRPRSRVLLPLALTALAFLVCFMLVLAPAVGGDALFLVTMVCIVASALAVAFLQSALFGLAGRFPPLYTQGMMAGQGIAGLVVALSSLLTTMAGPDATCLPHDTVDGSTLAYFGIAFATLVLCAGAFIFLERLPVAIYY 588
            QGI  + PWNAFI+A EYF +   G  + +NF+N FSV + L  +  + +A+  Q       +++L L +  + F++  +L     +  +A F + +  +  SA+  A+LQ+AL+ LA R PP Y QG + GQG AGL+ +L  L   +   +      ++V    + YF    A +V+   A+I L RLP+ +YY
Sbjct:   37 QGIAMMLPWNAFITAAEYFIQAFSGGHFVNNFQNYFSVSFTLFNMIFVGVAMSRQHKANFPRQIMLSLIVNTVIFIIVSVLATLDYIEPNAYFGIILTLMTLSAVTTAYLQNALYELAARLPPRYVQGFLTGQGFAGLIASLVPLAIVLGMDEEKANTLESVTERAIIYFAFTAALMVVSLIAYILLRRLPIYLYY 232          
BLAST of mRNA_P-wetherbeei_contig13816.1.1 vs. uniprot
Match: A9V9K8_MONBE (Predicted protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9V9K8_MONBE)

HSP 1 Score: 107 bits (266), Expect = 1.190e-23
Identity = 69/201 (34.33%), Postives = 109/201 (54.23%), Query Frame = 1
Query:    1 QGIGQLFPWNAFISATEYFGRRLCGTAYADNFENCFSVGYNLSGLAGLALAVRCQRLLRPRSRVLLPLALTALAFLVCFMLVLAPAVGGDALFLVTMVCIVASALAVAFLQSALFGLAGRFPPLYTQGMMAGQGIAGLVVALSSLLTTMAGPDATCLPHDTVDGSTLAYFGIAFATLVLCAGAFIFLERLPVAIYYLGAAE 603
            +GIG LFPWNAFI+ T YF   L GT YA ++EN FS  +  + +  + LA+R ++ +   +R+L PL +  + F    ++   P +  +A   +T+   VA+  A AFLQS LFGLAG  P  Y   +M GQ + G++VA  +L++   G   T  P +    +   +F ++   L+ C   ++ L R P+ I  L  A+
Sbjct:   42 EGIGSLFPWNAFITVTSYFDDVLAGTNYASSYENYFSFSFQGASIIFILLAMRYKQRINVHTRILAPLVIEVIVFSSVTVISKIPGLSTNAFMSITIGQTVAAGAAGAFLQSGLFGLAGVMPEAYVHALMNGQALGGVIVAGLNLVSL--GVSGTSQPRE----AAFLFFILSVVVLLCCFVGYVLLMRHPLVISNLEKAD 236          
BLAST of mRNA_P-wetherbeei_contig13816.1.1 vs. uniprot
Match: A0A482SJY5_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SJY5_9ARCH)

HSP 1 Score: 107 bits (267), Expect = 1.290e-23
Identity = 67/200 (33.50%), Postives = 101/200 (50.50%), Query Frame = 1
Query:    4 GIGQLFPWNAFISATEYFGRRLCGTAYADNFENCFSVGYNLSGLAGLALAVRCQRLLRPRSRVLLPLALTALAFLVCFMLVLAPAVGGDALFLVTMVCIVASALAVAFLQSALFGLAGRFPPLYTQGMMAGQGIAGLVVALSSLLTTMAGP----------DATCLPHDTVDGSTLAYFGIAFATLVLCAGAFIFLERLP 573
            GIG L PWNAF++A +Y+G + C T +  +FE+ FS+ Y L+   GL L +     +  +S +  PL        +   LV  P++   ALF +TM+      +  + +   +F + G  P  YT  +M GQ  AGL+VAL S +T    P          D +C   +T+D   LAYF +A  TL +C   ++ L RLP
Sbjct:   30 GIGNLLPWNAFVTAAKYYGDQFCDTPFESSFESYFSMIYTLAQPFGLLLNIYYHSQITIQSLIFYPLIXXXXXXXIITALVATPSIEPYALFSITMLANFVCGVVGSIMNGGMFAMTGMLPSSYTAAIMNGQAAAGLIVALVSTITVAVNPSSCGDDDDADDGSCSHTNTLDYGALAYFIVACITLTVCVWLYLVLIRLP 229          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13816.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LP16_ECTSI6.910e-4254.90Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S3GPH9_9STRA4.610e-4043.66Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A4V1J034_ROZAC1.460e-3137.56Uncharacterized protein n=1 Tax=Rozella allomycis ... [more]
A0A4P9ZX81_9FUNG2.670e-2735.26Nucleoside transporter-domain-containing protein (... [more]
A0A4P9XH85_9FUNG8.790e-2735.44Nucleoside transporter-domain-containing protein n... [more]
A0A058Z4U7_FONAL2.140e-2636.73Uncharacterized protein n=1 Tax=Fonticula alba Tax... [more]
A0A1Y1Z722_9FUNG8.910e-2634.50Uncharacterized protein n=1 Tax=Basidiobolus meris... [more]
A0A4P9XXE1_9FUNG2.880e-2533.16Nucleoside transporter-domain-containing protein n... [more]
A9V9K8_MONBE1.190e-2334.33Predicted protein n=1 Tax=Monosiga brevicollis Tax... [more]
A0A482SJY5_9ARCH1.290e-2333.50Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13816contigP-wetherbeei_contig13816:662..1594 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LP16
Preferred nameSLC29A1
PFAMsNucleoside_tran
Model size603
Max annot lvl2759|Eukaryota
KEGG koko:K15014,ko:K17544
KEGG TC2.A.57.1
Hectar predicted targeting categorysignal anchor
GOsGO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0001666,GO:0001678,GO:0003008,GO:0003674,GO:0005215,GO:0005337,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005764,GO:0005765,GO:0005768,GO:0005770,GO:0005773,GO:0005774,GO:0005794,GO:0005886,GO:0005887,GO:0006139,GO:0006725,GO:0006807,GO:0006810,GO:0006863,GO:0006950,GO:0007154,GO:0007165,GO:0007166,GO:0007267,GO:0007268,GO:0007275,GO:0007589,GO:0007595,GO:0007610,GO:0007611,GO:0007612,GO:0008150,GO:0008152,GO:0008283,GO:0008306,GO:0009628,GO:0009719,GO:0009725,GO:0009743,GO:0009746,GO:0009749,GO:0009987,GO:0010008,GO:0010033,GO:0010243,GO:0010959,GO:0012505,GO:0015205,GO:0015851,GO:0015853,GO:0015854,GO:0015855,GO:0015858,GO:0015862,GO:0015864,GO:0015931,GO:0015932,GO:0016020,GO:0016021,GO:0016323,GO:0016324,GO:0019725,GO:0022857,GO:0023052,GO:0030431,GO:0030879,GO:0031090,GO:0031224,GO:0031226,GO:0031410,GO:0031902,GO:0031974,GO:0031981,GO:0031982,GO:0032501,GO:0032502,GO:0032868,GO:0032869,GO:0032870,GO:0032879,GO:0033500,GO:0033554,GO:0034257,GO:0034258,GO:0034284,GO:0034641,GO:0035344,GO:0035364,GO:0036293,GO:0036294,GO:0042221,GO:0042391,GO:0042592,GO:0042593,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043269,GO:0043271,GO:0043434,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0045177,GO:0046483,GO:0046903,GO:0048513,GO:0048519,GO:0048731,GO:0048732,GO:0048856,GO:0048878,GO:0050789,GO:0050794,GO:0050877,GO:0050878,GO:0050890,GO:0050896,GO:0051049,GO:0051051,GO:0051179,GO:0051234,GO:0051716,GO:0051924,GO:0051926,GO:0055082,GO:0055085,GO:0060078,GO:0060079,GO:0065007,GO:0065008,GO:0070013,GO:0070482,GO:0070887,GO:0071310,GO:0071322,GO:0071326,GO:0071331,GO:0071333,GO:0071375,GO:0071417,GO:0071453,GO:0071456,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0071944,GO:0090279,GO:0090281,GO:0097708,GO:0098588,GO:0098590,GO:0098805,GO:0098852,GO:0098916,GO:0099536,GO:0099537,GO:0099565,GO:1901264,GO:1901360,GO:1901505,GO:1901642,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1905114
Exons2
Evalue1.13e-42
EggNOG OGsKOG1479@1|root,KOG1479@2759|Eukaryota
Ec32 ortholog descriptionEquilibrative nucleoside transporter
Ec32 orthologEc-06_006960.1
Descriptionnucleoside transmembrane transporter activity
Cds size603
COG categoryS
BRITEko00000,ko01001,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185998.4836829-CDS-P-wetherbeei_contig13816:661..7991683185998.4836829-CDS-P-wetherbeei_contig13816:661..799Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13816 662..799 -
1683185998.4952724-CDS-P-wetherbeei_contig13816:1129..15941683185998.4952724-CDS-P-wetherbeei_contig13816:1129..1594Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13816 1130..1594 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13816.1.1prot_P-wetherbeei_contig13816.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13816 662..1594 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13816.1.1

>prot_P-wetherbeei_contig13816.1.1 ID=prot_P-wetherbeei_contig13816.1.1|Name=mRNA_P-wetherbeei_contig13816.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=201bp
QGIGQLFPWNAFISATEYFGRRLCGTAYADNFENCFSVGYNLSGLAGLAL
AVRCQRLLRPRSRVLLPLALTALAFLVCFMLVLAPAVGGDALFLVTMVCI
VASALAVAFLQSALFGLAGRFPPLYTQGMMAGQGIAGLVVALSSLLTTMA
GPDATCLPHDTVDGSTLAYFGIAFATLVLCAGAFIFLERLPVAIYYLGAA
E
back to top

mRNA from alignment at P-wetherbeei_contig13816:662..1594-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13816.1.1 ID=mRNA_P-wetherbeei_contig13816.1.1|Name=mRNA_P-wetherbeei_contig13816.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=933bp|location=Sequence derived from alignment at P-wetherbeei_contig13816:662..1594- (Phaeothamnion wetherbeei SAG_119_79)
CAGGGTATCGGCCAACTCTTCCCGTGGAATGCCTTCATCAGCGCCACCGA GTACTTCGGGCGACGCCTCTGCGGCACGGCCTACGCCGACAACTTCGAGA ACTGCTTTAGCGTCGGCTACAACCTGTCGGGCCTCGCCGGACTCGCGCTG GCCGTCCGCTGCCAGCGCCTCCTGCGGCCGCGCTCCCGCGTCCTGCTGCC GCTGGCGCTGACAGCGCTGGCGTTCCTCGTCTGCTTCATGCTCGTTCTGG CGCCCGCCGTCGGCGGCGACGCGCTGTTCTTGGTGACGATGGTTTGCATA GTCGCGTCGGCGCTGGCGGTCGCCTTTCTGCAGAGCGCGCTCTTCGGGTT GGCCGGGCGGTTCCCGCCGCTTTACACGCAGGGCATGATGGCCGGCCAGG GCATTGCCGGGCTCGTCGTGGCGCTCTCCAGCCTGCTGACCACCATGGCA GGCCCTGACGCCACCGTCTGCGAAGACGACGACAATGGCGCCGCCGCTGT TGCCACTATCGTCACCGCCGCCACCGCAGAGGCCGCAGAAGGCGCCGCCG CTTCCTCTTCTTCTATCGCCAACATGGCAGACATTGTCGGCAGAAGGTCT GCCGCCGTCGGTGTATTGCTCGCAAACATGCGGCGAAGAGCTGCGAAAAG CGACTTCGGTTGCAACGAGTTTGGTTACGGCGGCCTGGGTCAGCCGGCGC CGCCGCCTGGGGACTGGCTGGCGGCGGAAGCGGCGGGTGCGACTCCGTTA GCTTTTGCTGTGGCGGCGACGGTGGGAGTGGGGGATGATTTCGAGTGTCT GCCGCACGACACTGTGGACGGCAGCACGTTGGCATATTTCGGCATCGCAT TTGCTACTTTAGTGCTATGCGCGGGCGCCTTTATCTTCTTGGAGCGACTG CCGGTCGCCATTTACTACCTGGGGGCCGCCGAA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig13816:662..1594-

>mRNA_P-wetherbeei_contig13816.1.1 ID=mRNA_P-wetherbeei_contig13816.1.1|Name=mRNA_P-wetherbeei_contig13816.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=603bp|location=Sequence derived from alignment at P-wetherbeei_contig13816:662..1594- (Phaeothamnion wetherbeei SAG_119_79)
CAGGGTATCGGCCAACTCTTCCCGTGGAATGCCTTCATCAGCGCCACCGA
GTACTTCGGGCGACGCCTCTGCGGCACGGCCTACGCCGACAACTTCGAGA
ACTGCTTTAGCGTCGGCTACAACCTGTCGGGCCTCGCCGGACTCGCGCTG
GCCGTCCGCTGCCAGCGCCTCCTGCGGCCGCGCTCCCGCGTCCTGCTGCC
GCTGGCGCTGACAGCGCTGGCGTTCCTCGTCTGCTTCATGCTCGTTCTGG
CGCCCGCCGTCGGCGGCGACGCGCTGTTCTTGGTGACGATGGTTTGCATA
GTCGCGTCGGCGCTGGCGGTCGCCTTTCTGCAGAGCGCGCTCTTCGGGTT
GGCCGGGCGGTTCCCGCCGCTTTACACGCAGGGCATGATGGCCGGCCAGG
GCATTGCCGGGCTCGTCGTGGCGCTCTCCAGCCTGCTGACCACCATGGCA
GGCCCTGACGCCACCTGTCTGCCGCACGACACTGTGGACGGCAGCACGTT
GGCATATTTCGGCATCGCATTTGCTACTTTAGTGCTATGCGCGGGCGCCT
TTATCTTCTTGGAGCGACTGCCGGTCGCCATTTACTACCTGGGGGCCGCC
GAA
back to top