mRNA_P-wetherbeei_contig13815.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13815.2.1
Unique NamemRNA_P-wetherbeei_contig13815.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13815.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13815contigP-wetherbeei_contig13815:941..1504 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog28583.AMAG_00541T0
Preferred nameMRPL4
PFAMsMRP-L47
Model size307
Max annot lvl4751|Fungi
KEGG koko:K17428
Hectar predicted targeting categoryother localisation
GOsGO:0000313,GO:0000315,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005761,GO:0005762,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0031974,GO:0032543,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0070013,GO:0071704,GO:0098798,GO:0140053,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Exons2
Evalue5.88e-05
EggNOG OGsKOG3331@1|root,KOG3331@2759|Eukaryota,3A0M2@33154|Opisthokonta,3P2HC@4751|Fungi
Ec32 ortholog descriptionRibosomal protein L47, mitochondrial
Ec32 orthologEc-16_004340.1
Descriptionribosomal protein
Cds size243
COG categoryJ
BRITEbr01610,ko00000,ko03011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185998.407479-CDS-P-wetherbeei_contig13815:940..10261683185998.407479-CDS-P-wetherbeei_contig13815:940..1026Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13815 941..1026 +
1683185998.4176915-CDS-P-wetherbeei_contig13815:1284..14411683185998.4176915-CDS-P-wetherbeei_contig13815:1284..1441Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13815 1285..1441 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185998.4259362-UTR-P-wetherbeei_contig13815:1441..15041683185998.4259362-UTR-P-wetherbeei_contig13815:1441..1504Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig13815 1442..1504 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13815.2.1prot_P-wetherbeei_contig13815.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13815 941..1441 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13815.2.1

>prot_P-wetherbeei_contig13815.2.1 ID=prot_P-wetherbeei_contig13815.2.1|Name=mRNA_P-wetherbeei_contig13815.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=81bp
RPGESIQTGRAWTVAELRNKGFSDLHKLWPNRAIAAVNIVGPPLPAPLCD
RPLAVACAALRCAAPHGRAGLCSTRKRICC*
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mRNA from alignment at P-wetherbeei_contig13815:941..1504+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13815.2.1 ID=mRNA_P-wetherbeei_contig13815.2.1|Name=mRNA_P-wetherbeei_contig13815.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=564bp|location=Sequence derived from alignment at P-wetherbeei_contig13815:941..1504+ (Phaeothamnion wetherbeei SAG_119_79)
CGACCGGGGGAGTCCATCCAGACAGGACGGGCGTGGACGGTCGCGGAGCT
GCGCAACAAGGGCTTCTCCGACCTACACAAGCTCTGGTGCGCCTTGGTTT
GTGTTTTCATTCTCCGAGGATCGGTTTTCTGTAACGTACGGGAAAAGTTC
CCTTCGCATATGCCCAACTTGTTTCACCCAACTCTATTTTCTCATTTCCA
GGGAATACCTGGTAATTTTTCCTTGTCCAAGTGAAACTTCGACACATTCC
CGTCGGCAGCACATACTTCCACGCATTTGTGACTACCATTTGATTCTAGC
TTTCTTTCCATCTGCTGTAGCACCCCGTCCGCCTCTTTTCCCAGGCCTAA
CCGTGCCATCGCCGCCGTCAACATTGTCGGACCACCACTGCCTGCTCCGC
TTTGTGATCGCCCGCTTGCGGTCGCGTGCGCTGCGCTGCGCTGCGCTGCG
CCGCATGGGCGAGCAGGTTTGTGCTCTACAAGGAAAAGAATTTGCTGCTG
ACACAGCAGAACGCGGCGCGGCGACGAGACCTCAAATTCGACGGCGCAGA
TCGGAGCAAAAAGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13815:941..1504+

>mRNA_P-wetherbeei_contig13815.2.1 ID=mRNA_P-wetherbeei_contig13815.2.1|Name=mRNA_P-wetherbeei_contig13815.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=243bp|location=Sequence derived from alignment at P-wetherbeei_contig13815:941..1504+ (Phaeothamnion wetherbeei SAG_119_79)
CGACCGGGGGAGTCCATCCAGACAGGACGGGCGTGGACGGTCGCGGAGCT
GCGCAACAAGGGCTTCTCCGACCTACACAAGCTCTGGCCTAACCGTGCCA
TCGCCGCCGTCAACATTGTCGGACCACCACTGCCTGCTCCGCTTTGTGAT
CGCCCGCTTGCGGTCGCGTGCGCTGCGCTGCGCTGCGCTGCGCCGCATGG
GCGAGCAGGTTTGTGCTCTACAAGGAAAAGAATTTGCTGCTGA
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