mRNA_P-wetherbeei_contig13810.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13810.2.1
Unique NamemRNA_P-wetherbeei_contig13810.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig13810.2.1 vs. uniprot
Match: UPI001E4336C7 (right-handed parallel beta-helix repeat-containing protein n=2 Tax=unclassified Deinococcus TaxID=2623546 RepID=UPI001E4336C7)

HSP 1 Score: 77.0 bits (188), Expect = 3.280e-13
Identity = 51/160 (31.87%), Postives = 78/160 (48.75%), Query Frame = 1
Query:    4 DLERLLQAALP-NGYLRLPAGRYRLQKPLALYQAMTIEGAGANLTFIVSSNREFVMRMQGEGPYALSDLTLVHEGEQPSRVLWVDGSRFSLERCGFKGGCWVDD-RDWGCGLHLTGAAQGRVAVCEFSENDHGIVVDGHAAPQLESNRCFENRGNGIRYR 477
            D  R L AAL   G + LPAG YRL++P+ + + +T+ GAG   T + S+  E  + +  +   +LSDL++ H G  P+R +  DG + SLER    G    DD  ++G GL +   A   V+   F+ N  G+                 NR  G+ +R
Sbjct:   79 DETRALVAALEAGGEVVLPAGAYRLERPVTISEPLTLSGAGMKATVLFSAAAEDTLILT-QSQVSLSDLSVAHVGTLPARTIRQDGGQLSLERVLIAGAVRDDDLSEYGSGLWVQEQAAATVSASTFTGNTFGVYXXXXXXXXXXXXXXXANRDGGLLFR 237          
BLAST of mRNA_P-wetherbeei_contig13810.2.1 vs. uniprot
Match: A0A1T1B7Z9_9DEIO (Protein kinase domain-containing protein n=4 Tax=unclassified Deinococcus TaxID=2623546 RepID=A0A1T1B7Z9_9DEIO)

HSP 1 Score: 77.0 bits (188), Expect = 3.730e-13
Identity = 51/160 (31.87%), Postives = 78/160 (48.75%), Query Frame = 1
Query:    4 DLERLLQAALP-NGYLRLPAGRYRLQKPLALYQAMTIEGAGANLTFIVSSNREFVMRMQGEGPYALSDLTLVHEGEQPSRVLWVDGSRFSLERCGFKGGCWVDD-RDWGCGLHLTGAAQGRVAVCEFSENDHGIVVDGHAAPQLESNRCFENRGNGIRYR 477
            D  R L AAL   G + LPAG YRL++P+ + + +T+ GAG   T + S+  E  + +  +   +LSDL++ H G  P+R +  DG + SLER    G    DD  ++G GL +   A   V+   F+ N  G+                 NR  G+ +R
Sbjct:  465 DETRALVAALEAGGEVVLPAGAYRLERPVTISEPLTLSGAGMKATVLFSAAAEDTLILT-QSQVSLSDLSVAHVGTLPARTIRQDGGQLSLERVLIAGAVRDDDLSEYGSGLWVQEQAAATVSASTFTGNTFGVYXXXXXXXXXXXXXXXANRDGGLLFR 623          
BLAST of mRNA_P-wetherbeei_contig13810.2.1 vs. uniprot
Match: A0A847KFS1_9ACTO (NosD domain-containing protein n=1 Tax=Actinomycetales bacterium TaxID=1911520 RepID=A0A847KFS1_9ACTO)

HSP 1 Score: 74.7 bits (182), Expect = 2.100e-12
Identity = 56/187 (29.95%), Postives = 83/187 (44.39%), Query Frame = 1
Query:    4 DLERLLQAALPNGYLRLPAGRYRLQKPLALYQAMTIEGAGANLTFIVSSNREFVMRMQGEGPYALSDLTLVHEGEQPSRVLWVDGSRFSLERCGFKGGCWVDDRDWGCGLH-----LTGAAQGRVA--VCEFSENDHGIVVDGHAAPQLESNRCFENRGNGIRYRAHGGGQASQNECSYNAQAGIHV 543
            +L   L  A     +R+  G YRL +PL + + +T+ GAGA  T +VS+  +  + +  +G   + DL + HEG QP+ V+ V G  + LER    GG  V    +G  L      L G    RV   V        G+VV G  AP +       + G G+ +     G  S    S + Q G+ V
Sbjct:  143 ELVAALAVAGSGSVIRIAGGEYRLSQPLVMLRPVTLVGAGAAATVLVSTAADAALVLATDGDAVVRDLAIAHEGPQPASVVLVAGGGYVLERLRIDGGAAVGSGGYGVVLRPASNPLLGTGTRRVLDDVTLVGTPAGGVVVAGEEAPTIRDVSVTGSAGCGLCFVERSAGTVSGATIS-DTQVGVRV 328          
BLAST of mRNA_P-wetherbeei_contig13810.2.1 vs. uniprot
Match: A0A1V5P7X1_9CHLR (Uncharacterized protein n=1 Tax=Chloroflexi bacterium ADurb.Bin360 TaxID=1852861 RepID=A0A1V5P7X1_9CHLR)

HSP 1 Score: 67.8 bits (164), Expect = 5.120e-10
Identity = 42/114 (36.84%), Postives = 59/114 (51.75%), Query Frame = 1
Query:  130 LTFIVSSNREFVMRMQGEGPYALSDLTLVHEGEQPSRVLWVDGSRFSLERCGFKGGCWVDDRDWGCGLHLTGAAQGRVAVCEFSEND-HGIVVDGHAAPQLESNRCFENRGNGI 468
            LT IVSS+ E VMR  GEG   +  +T  HEG+  + V++ D      + C F+G   +D+     GLHL+G A G V  C  + N+  G  +   A   L +N C +N  NGI
Sbjct:    3 LTTIVSSSPEAVMRYTGEGRLEVRGITFRHEGDAEADVVYADRGEVLFDSCVFEGATSLDNGTPRGGLHLSGTAIGLVQNCTAANNNLDGFRLTEQAQVDLVNNICRDNYQNGI 116          
BLAST of mRNA_P-wetherbeei_contig13810.2.1 vs. uniprot
Match: A0A7V2E9K7_9BACT (Uncharacterized protein n=1 Tax=Gemmataceae bacterium TaxID=2052164 RepID=A0A7V2E9K7_9BACT)

HSP 1 Score: 58.5 bits (140), Expect = 8.040e-7
Identity = 39/138 (28.26%), Postives = 70/138 (50.72%), Query Frame = 1
Query:    7 LERLLQAALPNGYLRLPAGRYRLQKPLALYQAMTIEGAGANLTFIVSSNREFVMRMQGEGPYALSDLTLVHEGEQPSRVLWVDG-SRFSLERCGFKGGCW-VDDRDWGCGLHLTGAA-QGRVAVCEFSENDHGIVVDG 411
            LE  +Q A     + LP G++ L + L + +A+T+ GAG + T ++S+   +V+ +QG GPY +  +   H G   + +L V G     +  C F      V+ + +G GL +   + Q R  + E +E+  G+ + G
Sbjct:  169 LEEAVQKAQAGDIVLLPEGKFVLARELVIDKALTLRGAGRDKTHVISTAANYVLNLQGPGPYTVEGINFSHSGLSGADILVVTGCEECQIIGCRFANARRDVNQKQYGRGLVINAVSCQIRNTLVEDNEST-GVSLRG 305          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13810.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
UPI001E4336C73.280e-1331.88right-handed parallel beta-helix repeat-containing... [more]
A0A1T1B7Z9_9DEIO3.730e-1331.88Protein kinase domain-containing protein n=4 Tax=u... [more]
A0A847KFS1_9ACTO2.100e-1229.95NosD domain-containing protein n=1 Tax=Actinomycet... [more]
A0A1V5P7X1_9CHLR5.120e-1036.84Uncharacterized protein n=1 Tax=Chloroflexi bacter... [more]
A0A7V2E9K7_9BACT8.040e-728.26Uncharacterized protein n=1 Tax=Gemmataceae bacter... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13810contigP-wetherbeei_contig13810:1246..1788 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog926560.KE387027_gene955
Preferred namewcoB
PFAMsBeta_helix,DUF1565,NosD
Model size543
Max annot lvl2|Bacteria
KEGG rclassRC00509
KEGG koko:K01795
KEGG ReactionR08693
KEGG Pathwayko00051,map00051
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.64e-20
EggNOG OGsCOG3420@1|root,COG3420@2|Bacteria
EC5.1.3.37
Descriptionalginic acid biosynthetic process
Cds size543
COG categoryP
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185998.2994132-CDS-P-wetherbeei_contig13810:1245..17881683185998.2994132-CDS-P-wetherbeei_contig13810:1245..1788Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13810 1246..1788 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13810.2.1prot_P-wetherbeei_contig13810.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13810 1246..1788 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13810.2.1

>prot_P-wetherbeei_contig13810.2.1 ID=prot_P-wetherbeei_contig13810.2.1|Name=mRNA_P-wetherbeei_contig13810.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=181bp
MDLERLLQAALPNGYLRLPAGRYRLQKPLALYQAMTIEGAGANLTFIVSS
NREFVMRMQGEGPYALSDLTLVHEGEQPSRVLWVDGSRFSLERCGFKGGC
WVDDRDWGCGLHLTGAAQGRVAVCEFSENDHGIVVDGHAAPQLESNRCFE
NRGNGIRYRAHGGGQASQNECSYNAQAGIHV
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mRNA from alignment at P-wetherbeei_contig13810:1246..1788+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13810.2.1 ID=mRNA_P-wetherbeei_contig13810.2.1|Name=mRNA_P-wetherbeei_contig13810.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=543bp|location=Sequence derived from alignment at P-wetherbeei_contig13810:1246..1788+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGACCTTGAGCGTCTGCTGCAGGCTGCGTTGCCCAACGGCTACTTGCG CCTGCCCGCGGGGCGATATCGGCTGCAAAAACCGCTGGCTCTCTATCAAG CGATGACCATCGAAGGCGCGGGCGCCAATCTCACGTTCATCGTCTCCAGC AACCGCGAGTTCGTGATGCGGATGCAGGGAGAGGGGCCTTACGCCCTCAG CGATCTCACGCTGGTGCACGAGGGCGAGCAGCCTTCGCGGGTGCTGTGGG TGGACGGTTCGCGCTTCAGCCTGGAGCGCTGCGGGTTCAAAGGCGGATGC TGGGTCGACGACCGGGATTGGGGTTGCGGCCTGCATCTCACCGGGGCGGC CCAGGGCCGGGTGGCGGTCTGCGAATTCAGCGAAAACGACCACGGTATCG TCGTCGACGGACACGCCGCCCCTCAACTCGAATCCAATCGGTGCTTTGAA AATCGCGGCAACGGCATCCGCTATCGGGCCCACGGCGGCGGTCAGGCCAG CCAGAACGAGTGCAGCTACAATGCCCAGGCGGGGATTCACGTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13810:1246..1788+

>mRNA_P-wetherbeei_contig13810.2.1 ID=mRNA_P-wetherbeei_contig13810.2.1|Name=mRNA_P-wetherbeei_contig13810.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=543bp|location=Sequence derived from alignment at P-wetherbeei_contig13810:1246..1788+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGACCTTGAGCGTCTGCTGCAGGCTGCGTTGCCCAACGGCTACTTGCG
CCTGCCCGCGGGGCGATATCGGCTGCAAAAACCGCTGGCTCTCTATCAAG
CGATGACCATCGAAGGCGCGGGCGCCAATCTCACGTTCATCGTCTCCAGC
AACCGCGAGTTCGTGATGCGGATGCAGGGAGAGGGGCCTTACGCCCTCAG
CGATCTCACGCTGGTGCACGAGGGCGAGCAGCCTTCGCGGGTGCTGTGGG
TGGACGGTTCGCGCTTCAGCCTGGAGCGCTGCGGGTTCAAAGGCGGATGC
TGGGTCGACGACCGGGATTGGGGTTGCGGCCTGCATCTCACCGGGGCGGC
CCAGGGCCGGGTGGCGGTCTGCGAATTCAGCGAAAACGACCACGGTATCG
TCGTCGACGGACACGCCGCCCCTCAACTCGAATCCAATCGGTGCTTTGAA
AATCGCGGCAACGGCATCCGCTATCGGGCCCACGGCGGCGGTCAGGCCAG
CCAGAACGAGTGCAGCTACAATGCCCAGGCGGGGATTCACGTG
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