mRNA_P-wetherbeei_contig13802.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13802.2.1
Unique NamemRNA_P-wetherbeei_contig13802.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig13802.2.1 vs. uniprot
Match: A0A7C4TTL0_9HYPH (50S ribosomal protein L27 n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7C4TTL0_9HYPH)

HSP 1 Score: 140 bits (352), Expect = 1.510e-41
Identity = 68/90 (75.56%), Postives = 75/90 (83.33%), Query Frame = 1 
Query:    1 MAHKKAGGSSRNGRDSNPKMLGVKRYGGQAVIAGNILVRQRGTKCHPGDNVGMGRDHTLFAKCDGVVEFRRRRNERVFVSVKPVTAQAAE 270
            MAHKKAGGSSRNGRDS PKMLGVKRYGG+ V+AGNIL RQRGTK HPG NVGMGRDHTLFA  DG VE+R  + ERV+VSV+P+    AE
Sbjct:    1 MAHKKAGGSSRNGRDSRPKMLGVKRYGGEIVLAGNILCRQRGTKWHPGRNVGMGRDHTLFALVDGQVEYRTSKEERVYVSVRPMKVSQAE 90
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BLAST of mRNA_P-wetherbeei_contig13802.2.1 vs. uniprot
Match: A0A849TFR3_9HYPH (50S ribosomal protein L27 n=1 Tax=Hyphomicrobiaceae bacterium TaxID=2015799 RepID=A0A849TFR3_9HYPH)

HSP 1 Score: 138 bits (348), Expect = 6.150e-41
Identity = 69/90 (76.67%), Postives = 75/90 (83.33%), Query Frame = 1 
Query:    1 MAHKKAGGSSRNGRDSNPKMLGVKRYGGQAVIAGNILVRQRGTKCHPGDNVGMGRDHTLFAKCDGVVEFRRRRNERVFVSVKPVTAQAAE 270
            MA KKAGGSSRNGRDSNPKMLGVKRYGGQ V+AGNILVRQRGTK H G+NVGMG DHTLFAK +GVV F  +RN R FV+V P   +AAE
Sbjct:    1 MAQKKAGGSSRNGRDSNPKMLGVKRYGGQHVLAGNILVRQRGTKFHAGNNVGMGTDHTLFAKIEGVVSFATKRNGRTFVAVAPQKLEAAE 90
[Close]
BLAST of mRNA_P-wetherbeei_contig13802.2.1 vs. uniprot
Match: A0A3L7AP03_9HYPH (50S ribosomal protein L27 n=1 Tax=Xanthobacter tagetidis TaxID=60216 RepID=A0A3L7AP03_9HYPH)

HSP 1 Score: 137 bits (344), Expect = 2.510e-40
Identity = 69/90 (76.67%), Postives = 74/90 (82.22%), Query Frame = 1 
Query:    1 MAHKKAGGSSRNGRDSNPKMLGVKRYGGQAVIAGNILVRQRGTKCHPGDNVGMGRDHTLFAKCDGVVEFRRRRNERVFVSVKPVTAQAAE 270
            MAHKKAGGSSRNGRDS  K LGVKR+GGQ VIAGNI+VRQRGTK HPG NVGMGRDHTLFA   G VEFR + N+R FVSV P  A+AAE
Sbjct:    1 MAHKKAGGSSRNGRDSESKRLGVKRFGGQDVIAGNIIVRQRGTKWHPGLNVGMGRDHTLFALIQGKVEFRTKSNDRTFVSVIPAAAEAAE 90
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BLAST of mRNA_P-wetherbeei_contig13802.2.1 vs. uniprot
Match: A0A101W7P1_9PROT (50S ribosomal protein L27 n=1 Tax=Alphaproteobacteria bacterium BRH_c36 TaxID=1734406 RepID=A0A101W7P1_9PROT)

HSP 1 Score: 135 bits (341), Expect = 7.190e-40
Identity = 65/90 (72.22%), Postives = 75/90 (83.33%), Query Frame = 1 
Query:    1 MAHKKAGGSSRNGRDSNPKMLGVKRYGGQAVIAGNILVRQRGTKCHPGDNVGMGRDHTLFAKCDGVVEFRRRRNERVFVSVKPVTAQAAE 270
            MA KKAGGS++NGRDS  K LGVKRYGG+ VI GNI+VRQRGTK HPG NVGMG DHT+FAK +G VEFR RRN R ++SV+P T+QAAE
Sbjct:    1 MAQKKAGGSTKNGRDSESKRLGVKRYGGEVVIPGNIIVRQRGTKWHPGSNVGMGTDHTIFAKVEGEVEFRTRRNGRTYISVQPKTSQAAE 90
[Close]
BLAST of mRNA_P-wetherbeei_contig13802.2.1 vs. uniprot
Match: A0A1T4RWI2_9HYPH (50S ribosomal protein L27 n=1 Tax=Consotaella salsifontis TaxID=1365950 RepID=A0A1T4RWI2_9HYPH)

HSP 1 Score: 135 bits (339), Expect = 1.410e-39
Identity = 69/90 (76.67%), Postives = 76/90 (84.44%), Query Frame = 1 
Query:    1 MAHKKAGGSSRNGRDSNPKMLGVKRYGGQAVIAGNILVRQRGTKCHPGDNVGMGRDHTLFAKCDGVVEFRRRRNERVFVSVKPVTAQAAE 270
            MAHKKAGGSSRNGRDS  K LGVK+YGG+AVIAGNILVRQRGT+ HPG NVG+GRDHTLFAK DG V F+ + N R FVSV PV A+AAE
Sbjct:    1 MAHKKAGGSSRNGRDSESKRLGVKKYGGEAVIAGNILVRQRGTRWHPGVNVGIGRDHTLFAKADGKVSFQTKANGRTFVSVAPV-AEAAE 89
[Close]
BLAST of mRNA_P-wetherbeei_contig13802.2.1 vs. uniprot
Match: G6A0N9_9PROT (50S ribosomal protein L27 n=6 Tax=Alphaproteobacteria TaxID=28211 RepID=G6A0N9_9PROT)

HSP 1 Score: 134 bits (336), Expect = 4.040e-39
Identity = 67/90 (74.44%), Postives = 78/90 (86.67%), Query Frame = 1 
Query:    1 MAHKKAGGSSRNGRDSNPKMLGVKRYGGQAVIAGNILVRQRGTKCHPGDNVGMGRDHTLFAKCDGVVEFRRRRNERVFVSVKPVTAQAAE 270
            MAHKKAGGSSRNGRDS  + LGVK+YGG++VIAGNI+VRQRGTK HPGDNVGMG+DHTLFA CDG V FR+R  +R+FVSV+   A+AAE
Sbjct:    1 MAHKKAGGSSRNGRDSAGRRLGVKKYGGESVIAGNIIVRQRGTKFHPGDNVGMGKDHTLFALCDGHVSFRQRAGKRMFVSVQG-QAKAAE 89
[Close]
BLAST of mRNA_P-wetherbeei_contig13802.2.1 vs. uniprot
Match: A0A127CER5_9HYPH (50S ribosomal protein L27 n=13 Tax=Hyphomicrobiales TaxID=356 RepID=A0A127CER5_9HYPH)

HSP 1 Score: 133 bits (335), Expect = 5.910e-39
Identity = 64/90 (71.11%), Postives = 75/90 (83.33%), Query Frame = 1 
Query:    1 MAHKKAGGSSRNGRDSNPKMLGVKRYGGQAVIAGNILVRQRGTKCHPGDNVGMGRDHTLFAKCDGVVEFRRRRNERVFVSVKPVTAQAAE 270
            MAHKKAGGSSRNGRDS  K LGVK++GG+ VI GNI++RQRGTK HPGDNVGMG+DHT+FAK +G V FR R N R++VSV P  A+AAE
Sbjct:    1 MAHKKAGGSSRNGRDSESKRLGVKKFGGENVIPGNIIIRQRGTKWHPGDNVGMGKDHTIFAKIEGNVTFRARANGRMYVSVAPKQAEAAE 90
[Close]
BLAST of mRNA_P-wetherbeei_contig13802.2.1 vs. uniprot
Match: UPI001F322CB1 (50S ribosomal protein L27 n=3 Tax=Xanthobacter TaxID=279 RepID=UPI001F322CB1)

HSP 1 Score: 133 bits (335), Expect = 5.910e-39
Identity = 65/90 (72.22%), Postives = 74/90 (82.22%), Query Frame = 1 
Query:    1 MAHKKAGGSSRNGRDSNPKMLGVKRYGGQAVIAGNILVRQRGTKCHPGDNVGMGRDHTLFAKCDGVVEFRRRRNERVFVSVKPVTAQAAE 270
            MAHKKAGGSSRNGRDS  K LGVK++GGQAVI GNI+VRQRGTK HPG NVG+G+DHTLFA   G VEFR + N+R +VSV P  A+AAE
Sbjct:    1 MAHKKAGGSSRNGRDSESKRLGVKKFGGQAVIPGNIIVRQRGTKWHPGTNVGIGKDHTLFALVPGKVEFRTKANDRTYVSVVPAAAEAAE 90
[Close]
BLAST of mRNA_P-wetherbeei_contig13802.2.1 vs. uniprot
Match: A0A366DSP3_9HYPH (50S ribosomal protein L27 n=3 Tax=Pseudochrobactrum TaxID=354349 RepID=A0A366DSP3_9HYPH)

HSP 1 Score: 133 bits (334), Expect = 8.150e-39
Identity = 67/90 (74.44%), Postives = 75/90 (83.33%), Query Frame = 1 
Query:    1 MAHKKAGGSSRNGRDSNPKMLGVKRYGGQAVIAGNILVRQRGTKCHPGDNVGMGRDHTLFAKCDGVVEFRRRRNERVFVSVKPVTAQAAE 270
            MAHKKAGGSSRNGRDS  K LGVK++G +AVIAGNI+VRQRGTK HPG NVGMG DHTLFAK DGVV F+ + N R FVSV P+ A+AAE
Sbjct:    1 MAHKKAGGSSRNGRDSESKRLGVKKFGSEAVIAGNIIVRQRGTKWHPGANVGMGTDHTLFAKADGVVSFKTKANGRTFVSVNPM-AEAAE 89
[Close]
BLAST of mRNA_P-wetherbeei_contig13802.2.1 vs. uniprot
Match: A0A0A1PQ33_9BACT (50S ribosomal protein L27 n=6 Tax=Bacteria TaxID=2 RepID=A0A0A1PQ33_9BACT)

HSP 1 Score: 133 bits (334), Expect = 8.150e-39
Identity = 65/88 (73.86%), Postives = 73/88 (82.95%), Query Frame = 1 
Query:    1 MAHKKAGGSSRNGRDSNPKMLGVKRYGGQAVIAGNILVRQRGTKCHPGDNVGMGRDHTLFAKCDGVVEFRRRRNERVFVSVKPVTAQA 264
            MAHKKAGGSSRNGRDS+ K LGVKR+GGQAV++GNILVRQRGTK HPG NVG+G DHTLFA  DG VEFR + N R +VSV P+ A A
Sbjct:    1 MAHKKAGGSSRNGRDSHSKRLGVKRFGGQAVVSGNILVRQRGTKFHPGTNVGLGTDHTLFATADGRVEFRTKSNNRTYVSVVPMIAAA 88
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13802.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C4TTL0_9HYPH1.510e-4175.5650S ribosomal protein L27 n=1 Tax=Hyphomicrobiales... [more]
A0A849TFR3_9HYPH6.150e-4176.6750S ribosomal protein L27 n=1 Tax=Hyphomicrobiacea... [more]
A0A3L7AP03_9HYPH2.510e-4076.6750S ribosomal protein L27 n=1 Tax=Xanthobacter tag... [more]
A0A101W7P1_9PROT7.190e-4072.2250S ribosomal protein L27 n=1 Tax=Alphaproteobacte... [more]
A0A1T4RWI2_9HYPH1.410e-3976.6750S ribosomal protein L27 n=1 Tax=Consotaella sals... [more]
G6A0N9_9PROT4.040e-3974.4450S ribosomal protein L27 n=6 Tax=Alphaproteobacte... [more]
A0A127CER5_9HYPH5.910e-3971.1150S ribosomal protein L27 n=13 Tax=Hyphomicrobiale... [more]
UPI001F322CB15.910e-3972.2250S ribosomal protein L27 n=3 Tax=Xanthobacter Tax... [more]
A0A366DSP3_9HYPH8.150e-3974.4450S ribosomal protein L27 n=3 Tax=Pseudochrobactru... [more]
A0A0A1PQ33_9BACT8.150e-3973.8650S ribosomal protein L27 n=6 Tax=Bacteria TaxID=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13802contigP-wetherbeei_contig13802:1376..1648 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog909943.HIMB100_00018550
Preferred namerpmA
PFAMsRibosomal_L27
Model size273
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K02899
KEGG Pathwayko03010,map03010
KEGG ModuleM00178
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904
Exons1
Evalue6.62e-40
EggNOG OGsCOG0211@1|root,COG0211@2|Bacteria,1MZGH@1224|Proteobacteria,2UBUX@28211|Alphaproteobacteria,4BQNP@82117|unclassified Alphaproteobacteria
DescriptionBelongs to the bacterial ribosomal protein bL27 family
Cds size273
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185998.074172-CDS-P-wetherbeei_contig13802:1375..16481683185998.074172-CDS-P-wetherbeei_contig13802:1375..1648Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13802 1376..1648 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13802.2.1prot_P-wetherbeei_contig13802.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13802 1376..1648 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13802.2.1

>prot_P-wetherbeei_contig13802.2.1 ID=prot_P-wetherbeei_contig13802.2.1|Name=mRNA_P-wetherbeei_contig13802.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=91bp
MAHKKAGGSSRNGRDSNPKMLGVKRYGGQAVIAGNILVRQRGTKCHPGDN
VGMGRDHTLFAKCDGVVEFRRRRNERVFVSVKPVTAQAAE*
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mRNA from alignment at P-wetherbeei_contig13802:1376..1648-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13802.2.1 ID=mRNA_P-wetherbeei_contig13802.2.1|Name=mRNA_P-wetherbeei_contig13802.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=273bp|location=Sequence derived from alignment at P-wetherbeei_contig13802:1376..1648- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCACATAAAAAAGCAGGCGGCTCTTCGCGCAACGGCCGCGATTCCAA
CCCGAAGATGCTCGGCGTCAAGCGCTACGGCGGTCAGGCCGTGATCGCCG
GCAACATTCTCGTTCGCCAGCGCGGCACCAAGTGCCACCCGGGCGACAAC
GTCGGCATGGGCCGCGACCACACGCTATTCGCCAAGTGCGATGGCGTCGT
GGAGTTCCGCCGCCGCCGCAACGAGCGCGTGTTCGTCTCGGTCAAACCCG
TAACTGCCCAAGCAGCCGAATAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13802:1376..1648-

>mRNA_P-wetherbeei_contig13802.2.1 ID=mRNA_P-wetherbeei_contig13802.2.1|Name=mRNA_P-wetherbeei_contig13802.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=273bp|location=Sequence derived from alignment at P-wetherbeei_contig13802:1376..1648- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCACATAAAAAAGCAGGCGGCTCTTCGCGCAACGGCCGCGATTCCAA
CCCGAAGATGCTCGGCGTCAAGCGCTACGGCGGTCAGGCCGTGATCGCCG
GCAACATTCTCGTTCGCCAGCGCGGCACCAAGTGCCACCCGGGCGACAAC
GTCGGCATGGGCCGCGACCACACGCTATTCGCCAAGTGCGATGGCGTCGT
GGAGTTCCGCCGCCGCCGCAACGAGCGCGTGTTCGTCTCGGTCAAACCCG
TAACTGCCCAAGCAGCCGAATAG
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