mRNA_P-wetherbeei_contig1380.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1380.2.1
Unique NamemRNA_P-wetherbeei_contig1380.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1380.2.1 vs. uniprot
Match: A0A836CIL5_9STRA (Dynein light chain roadblock n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIL5_9STRA)

HSP 1 Score: 164 bits (415), Expect = 1.120e-50
Identity = 81/98 (82.65%), Postives = 88/98 (89.80%), Query Frame = 1 
Query:    4 SEVEETLERIKVQPGVEGYVICEMDGGVLRRFPGMPQETAEAYAQAVQHLAVKARGVVRDINPSSDLQYLRIRAKRHEVMVAFDKEFLAIVIQRWQPA 297
            ++VEETLERIKVQPGVEGYVIC+M G VLRRFP M QETAE YA ++ HLA KARGVVRD+NP S+L YLRIRAKRHEVMVAFDKEFLAIVIQRWQPA
Sbjct:    2 AQVEETLERIKVQPGVEGYVICDMQGQVLRRFPTMSQETAEMYAASMMHLAHKARGVVRDLNPKSELNYLRIRAKRHEVMVAFDKEFLAIVIQRWQPA 99
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BLAST of mRNA_P-wetherbeei_contig1380.2.1 vs. uniprot
Match: A0A6U1LT09_9STRA (Dynein light chain roadblock n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1LT09_9STRA)

HSP 1 Score: 149 bits (375), Expect = 1.400e-44
Identity = 73/99 (73.74%), Postives = 83/99 (83.84%), Query Frame = 1 
Query:    4 SEVEETLERIKVQPGVEGYVICEMDGGVLRRFPGMPQETAEAYAQAVQHLAVKARGVVRDINPSSDLQYLRIRAKRHEVMVAFDKEFLAIVIQRWQPAA 300
            SEVEETLER+KVQPGVEGYVIC   G VLRRFP M Q+ AE YA +++ LA KARGVVRD+NP  +L+YLRIRA+R EVMVA+D EFL IVIQRWQPAA
Sbjct:    2 SEVEETLERVKVQPGVEGYVICNKQGQVLRRFPSMRQDLAELYADSMRCLAAKARGVVRDLNPQHELRYLRIRARREEVMVAYDNEFLVIVIQRWQPAA 100
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BLAST of mRNA_P-wetherbeei_contig1380.2.1 vs. uniprot
Match: A0A6T7GUX9_9STRA (Dynein light chain roadblock n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A6T7GUX9_9STRA)

HSP 1 Score: 149 bits (375), Expect = 1.400e-44
Identity = 73/98 (74.49%), Postives = 83/98 (84.69%), Query Frame = 1 
Query:    4 SEVEETLERIKVQPGVEGYVICEMDGGVLRRFPGMPQETAEAYAQAVQHLAVKARGVVRDINPSSDLQYLRIRAKRHEVMVAFDKEFLAIVIQRWQPA 297
            SEVEETLER+KVQ GVEGYVIC   G VLRRFP M QE AE YA +++HLA KARGVVRD+NP ++L+YLRIRAKRHEVM+AFD EFL IVIQ+W PA
Sbjct:    2 SEVEETLERVKVQNGVEGYVICNRQGLVLRRFPQMSQEHAEQYADSMRHLANKARGVVRDLNPQNELRYLRIRAKRHEVMIAFDNEFLVIVIQKWTPA 99
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BLAST of mRNA_P-wetherbeei_contig1380.2.1 vs. uniprot
Match: D7FWL6_ECTSI (Robl_LC7 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWL6_ECTSI)

HSP 1 Score: 140 bits (353), Expect = 2.010e-41
Identity = 67/86 (77.91%), Postives = 79/86 (91.86%), Query Frame = 1 
Query:    4 SEVEETLERIKVQPGVEGYVICEMDGGVLRRFPGMPQETAEAYAQAVQHLAVKARGVVRDINPSSDLQYLRIRAKRHEVMVAFDKE 261
            SEVEETLERIKVQPGVEGYVIC+M+G VLRRFP M QETAE YA+A++HLA+KARGVVRD+NP  +L+Y+RIRAKRHEV+VAF +E
Sbjct:    2 SEVEETLERIKVQPGVEGYVICDMEGQVLRRFPTMSQETAEIYAEAMRHLALKARGVVRDVNPKGELKYMRIRAKRHEVLVAFGEE 87
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BLAST of mRNA_P-wetherbeei_contig1380.2.1 vs. uniprot
Match: F0Y2Y8_AURAN (Dynein light chain roadblock n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y2Y8_AURAN)

HSP 1 Score: 140 bits (354), Expect = 2.150e-41
Identity = 68/99 (68.69%), Postives = 80/99 (80.81%), Query Frame = 1 
Query:    4 SEVEETLERIKVQPGVEGYVICEMDGGVLRRFPGMPQETAEAYAQAVQHLAVKARGVVRDINPSSDLQYLRIRAKRHEVMVAFDKEFLAIVIQRWQPAA 300
            SEVEETLER+K+Q GVEGYVIC   G VLRR P M Q  AE YA  +  L+ KARGVVRD+NP ++L+YLR+RAKRHEV+VAFD+EFL IVIQRW PA+
Sbjct:    2 SEVEETLERVKIQAGVEGYVICSKQGQVLRRLPSMTQAQAEIYADFMSQLSRKARGVVRDLNPKNELRYLRLRAKRHEVLVAFDQEFLVIVIQRWTPAS 100
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BLAST of mRNA_P-wetherbeei_contig1380.2.1 vs. uniprot
Match: A0A7S3H6W3_9STRA (Dynein light chain roadblock n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H6W3_9STRA)

HSP 1 Score: 139 bits (349), Expect = 1.900e-40
Identity = 69/107 (64.49%), Postives = 81/107 (75.70%), Query Frame = 1 
Query:    4 SEVEETLERIKVQPGVEGYVICEMDGGVLRRFPGMPQETAEAYAQAVQHLAVKARGVVRDINPSSDLQYLRIRAKRHEVMVAFDKEFLAIVIQRWQPAAPA*RAGST 324
            SEVEET+ERIKVQ GVEGYVIC   G VLRRFP M  E AE YA  +  L  +ARGVVRD++P ++L YLR+RAKRHE+MVA+D +F+ IVIQRW PAAP   A  T
Sbjct:    2 SEVEETIERIKVQSGVEGYVICNKQGQVLRRFPTMSLEDAERYATTMISLTTQARGVVRDLDPKNELSYLRVRAKRHEIMVAYDVQFIVIVIQRWTPAAPVQGAHGT 108
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BLAST of mRNA_P-wetherbeei_contig1380.2.1 vs. uniprot
Match: A0A7S1XSI3_9STRA (Dynein light chain roadblock n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XSI3_9STRA)

HSP 1 Score: 133 bits (334), Expect = 2.470e-38
Identity = 68/101 (67.33%), Postives = 77/101 (76.24%), Query Frame = 1 
Query:    4 SEVEETLERIKVQPGVEGYVICEMDGGVLRRFPGMPQETAEAYAQAVQHLAVKARGVVRDINPSSDLQYLRIRAKRHEVMVAFDKEFLAIVIQRWQPAAPA 306
            S+VEETLERIK++PGV GYVIC  DG VLRRFP M  E A+ YA A+Q LA KA GVVRD+NP+  L+YLRIR KR EV+VA D  FL IVIQRW PA  A
Sbjct:    2 SDVEETLERIKMKPGVIGYVICNSDGTVLRRFPSMTPEQAQQYAAAMQKLAAKAGGVVRDMNPTDALEYLRIRCKRQEVVVARDDRFLVIVIQRWMPAEQA 102
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BLAST of mRNA_P-wetherbeei_contig1380.2.1 vs. uniprot
Match: A0A7S2F8W6_9STRA (Dynein light chain roadblock n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F8W6_9STRA)

HSP 1 Score: 128 bits (321), Expect = 2.900e-36
Identity = 64/100 (64.00%), Postives = 81/100 (81.00%), Query Frame = 1 
Query:    4 SEVEETLERIKVQPGVEGYVICEMDGGVLRRFPGMPQETAEA--YAQAVQHLAVKARGVVRDINPSSDLQYLRIRAKRHEVMVAFDKEFLAIVIQRWQPA 297
            SEVEETLERIK + GVEGYVIC   G VLRR+P  P++  +A  YA++++ LA KAR VVRD++P ++LQYLRIRAK HEV+VAFD EFL +VIQ+W+PA
Sbjct:    7 SEVEETLERIKEKEGVEGYVICNRHGDVLRRYPNEPKDFQDAAVYAESMRILAWKARSVVRDLDPENELQYLRIRAKTHEVIVAFDLEFLVVVIQKWEPA 106
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BLAST of mRNA_P-wetherbeei_contig1380.2.1 vs. uniprot
Match: A0A485LML8_9STRA (Dynein light chain roadblock n=7 Tax=Saprolegniaceae TaxID=4764 RepID=A0A485LML8_9STRA)

HSP 1 Score: 125 bits (313), Expect = 3.770e-35
Identity = 62/99 (62.63%), Postives = 74/99 (74.75%), Query Frame = 1 
Query:    4 SEVEETLERIKVQPGVEGYVICEMDGGVLRRFPGMPQETAEAYAQAVQHLAVKARGVVRDINPSSDLQYLRIRAKRHEVMVAFDKEFLAIVIQRWQPAA 300
            SEVEETLERIK   GVEGYVI + +G VLRR P M    AE Y+  ++ L  KARGVVRD+NP +DLQYLRIR K+ E++VA +KEFL IVIQ+W P A
Sbjct:    2 SEVEETLERIKNHKGVEGYVIADKNGAVLRRHPHMDPANAERYSTYMKELTTKARGVVRDLNPKNDLQYLRIRLKKFEILVAHEKEFLVIVIQKWSPTA 100
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BLAST of mRNA_P-wetherbeei_contig1380.2.1 vs. uniprot
Match: A0A812SWU6_SYMMI (DYNLRB1 protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812SWU6_SYMMI)

HSP 1 Score: 124 bits (310), Expect = 6.370e-35
Identity = 59/83 (71.08%), Postives = 71/83 (85.54%), Query Frame = 1 
Query:    4 SEVEETLERIKVQPGVEGYVICEMDGGVLRRFPGMPQETAEAYAQAVQHLAVKARGVVRDINPSSDLQYLRIRAKRHEVMVAF 252
            SEVEET+ERIKVQPGVEGYVIC   G VLRRFP M QETAE Y++A+  L+ +AR VVRD+NP ++L+YLR+RAKRHE+MVAF
Sbjct:    1 SEVEETIERIKVQPGVEGYVICNKQGQVLRRFPTMTQETAEQYSEAMMSLSSQARSVVRDLNPKNELKYLRVRAKRHEIMVAF 83
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1380.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CIL5_9STRA1.120e-5082.65Dynein light chain roadblock n=1 Tax=Tribonema min... [more]
A0A6U1LT09_9STRA1.400e-4473.74Dynein light chain roadblock n=1 Tax=Fibrocapsa ja... [more]
A0A6T7GUX9_9STRA1.400e-4474.49Dynein light chain roadblock n=1 Tax=Florenciella ... [more]
D7FWL6_ECTSI2.010e-4177.91Robl_LC7 domain-containing protein n=1 Tax=Ectocar... [more]
F0Y2Y8_AURAN2.150e-4168.69Dynein light chain roadblock n=1 Tax=Aureococcus a... [more]
A0A7S3H6W3_9STRA1.900e-4064.49Dynein light chain roadblock n=1 Tax=Spumella elon... [more]
A0A7S1XSI3_9STRA2.470e-3867.33Dynein light chain roadblock n=1 Tax=Phaeomonas pa... [more]
A0A7S2F8W6_9STRA2.900e-3664.00Dynein light chain roadblock n=1 Tax=Dictyocha spe... [more]
A0A485LML8_9STRA3.770e-3562.63Dynein light chain roadblock n=7 Tax=Saprolegniace... [more]
A0A812SWU6_SYMMI6.370e-3571.08DYNLRB1 protein (Fragment) n=1 Tax=Symbiodinium mi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1380contigP-wetherbeei_contig1380:3992..4594 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog44056.XP_009034990.1
PFAMsRobl_LC7
Model size327
Max annot lvl2759|Eukaryota
KEGG koko:K10419
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005858,GO:0005868,GO:0005875,GO:0005929,GO:0005930,GO:0006928,GO:0007017,GO:0007018,GO:0008150,GO:0009987,GO:0015630,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0030286,GO:0032838,GO:0032991,GO:0036157,GO:0042623,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044447,GO:0044463,GO:0044464,GO:0045505,GO:0097014,GO:0099568,GO:0120025,GO:0120038,GO:1902494
Exons2
Evalue1.27e-27
EggNOG OGsKOG4115@1|root,KOG4115@2759|Eukaryota
Ec32 ortholog descriptionDynein light chain-related
Ec32 orthologEc-11_002380.1
Descriptiondynein intermediate chain binding
Cds size237
COG categoryJ
BRITEko00000,ko04131,ko04812
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185997.9327877-UTR-P-wetherbeei_contig1380:3991..40091683185997.9327877-UTR-P-wetherbeei_contig1380:3991..4009Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1380 3992..4009 -
1683185997.9674807-UTR-P-wetherbeei_contig1380:4522..45941683185997.9674807-UTR-P-wetherbeei_contig1380:4522..4594Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1380 4523..4594 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185997.9424543-CDS-P-wetherbeei_contig1380:4009..40651683185997.9424543-CDS-P-wetherbeei_contig1380:4009..4065Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1380 4010..4065 -
1683185997.958641-CDS-P-wetherbeei_contig1380:4341..45221683185997.958641-CDS-P-wetherbeei_contig1380:4341..4522Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1380 4342..4522 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1380.2.1prot_P-wetherbeei_contig1380.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1380 4010..4522 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1380.2.1

>prot_P-wetherbeei_contig1380.2.1 ID=prot_P-wetherbeei_contig1380.2.1|Name=mRNA_P-wetherbeei_contig1380.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=79bp
MDGGVLRRFPGMPQETAEAYAQAVQHLAVKARGVVRDINPSSDLQYLRIR
AKRHEVMVAFDKEFLAIVIQRWQPAAPA*
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mRNA from alignment at P-wetherbeei_contig1380:3992..4594-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1380.2.1 ID=mRNA_P-wetherbeei_contig1380.2.1|Name=mRNA_P-wetherbeei_contig1380.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=603bp|location=Sequence derived from alignment at P-wetherbeei_contig1380:3992..4594- (Phaeothamnion wetherbeei SAG_119_79)
CAGTCGGAGGTGGAGGAGACGCTCGAGCGAATCAAAGTACAGCCCGGAGT
CGAGGGCTACGTCATTTGCGAGATGGACGGAGGAGTCCTGCGCCGCTTCC
CCGGGATGCCGCAGGAGACCGCCGAGGCCTATGCGCAAGCCGTCCAGCAC
CTCGCGGTAAAGGCACGCGGTGTCGTGCGAGACATCAACCCCAGCAGCGA
CCTGCAATACCTTCGGATACGAGCAAAACGCCACGAAGTCATGGTGGCCT
TCGGTGAGTGCCGAAAAGCCGAGTGTGGTTGCCCATTCTGTCTAAATCAA
AACCATCCTACGGGACTCTTCTGTCCCGAAGCACGTATATGTGCGCTGGA
TATATACAGGTCGATGGCCCGTCCATTCCCGTCTTACCAATTATGAGTTT
TTATCTTCTTCTCCTGTTCGGTGACTGTCCTATCTATCCCAAGCAATTTC
CGCACGCACCACCGCCACCGTTCATGCTTCCTTACGGCGTTGCGGCATCC
ACATTTTCCGGCATCGTAAAATCCGGCAGACAAGGAGTTTTTGGCAATTG
TCATTCAGCGATGGCAACCGGCGGCCCCTGCATGACGCGCCGGCTCAACG
GAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1380:3992..4594-

>mRNA_P-wetherbeei_contig1380.2.1 ID=mRNA_P-wetherbeei_contig1380.2.1|Name=mRNA_P-wetherbeei_contig1380.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=237bp|location=Sequence derived from alignment at P-wetherbeei_contig1380:3992..4594- (Phaeothamnion wetherbeei SAG_119_79)
ATGGACGGAGGAGTCCTGCGCCGCTTCCCCGGGATGCCGCAGGAGACCGC
CGAGGCCTATGCGCAAGCCGTCCAGCACCTCGCGGTAAAGGCACGCGGTG
TCGTGCGAGACATCAACCCCAGCAGCGACCTGCAATACCTTCGGATACGA
GCAAAACGCCACGAAGTCATGGTGGCCTTCGACAAGGAGTTTTTGGCAAT
TGTCATTCAGCGATGGCAACCGGCGGCCCCTGCATGA
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