mRNA_P-wetherbeei_contig13790.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13790.1.1
Unique NamemRNA_P-wetherbeei_contig13790.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig13790.1.1 vs. uniprot
Match: D8LCE3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCE3_ECTSI)

HSP 1 Score: 63.2 bits (152), Expect = 4.040e-9
Identity = 28/42 (66.67%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:  238 MLRIPEPIPDGSGEYGDWMVPVQFQSDIERIHAKAGFDKEGL 363
            ML+IP P+ D   + G WM+P+QFQSDIERIH KAGFDK GL
Sbjct:  878 MLQIPRPVED---DMGGWMIPIQFQSDIERIHVKAGFDKGGL 916
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BLAST of mRNA_P-wetherbeei_contig13790.1.1 vs. uniprot
Match: A0A7S2RCZ0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RCZ0_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 6.730e-7
Identity = 22/33 (66.67%), Postives = 27/33 (81.82%), Query Frame = 1 
Query:  262 PDGSGEYGDWMVPVQFQSDIERIHAKAGFDKEG 360
            P  +G  G+WM+P++FQSDI RIHAKAGFDK G
Sbjct:  311 PTNTGRPGEWMIPIEFQSDISRIHAKAGFDKAG 343
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BLAST of mRNA_P-wetherbeei_contig13790.1.1 vs. uniprot
Match: A0A7S2RCU1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RCU1_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 7.660e-7
Identity = 22/33 (66.67%), Postives = 27/33 (81.82%), Query Frame = 1 
Query:  262 PDGSGEYGDWMVPVQFQSDIERIHAKAGFDKEG 360
            P  +G  G+WM+P++FQSDI RIHAKAGFDK G
Sbjct:  623 PTNTGRPGEWMIPIEFQSDISRIHAKAGFDKAG 655
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BLAST of mRNA_P-wetherbeei_contig13790.1.1 vs. uniprot
Match: A0A7S4D7W8_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D7W8_HETAK)

HSP 1 Score: 55.1 bits (131), Expect = 1.800e-6
Identity = 25/40 (62.50%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:  241 LRIPEPIPDGSGEYGDWMVPVQFQSDIERIHAKAGFDKEG 360
            L+I EP+ D   E G +++P+QFQSD+ERIH KAGFDKEG
Sbjct:  219 LKITEPVEDV--EEGGYLIPIQFQSDMERIHLKAGFDKEG 256
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13790.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LCE3_ECTSI4.040e-966.67Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2RCZ0_9STRA6.730e-766.67Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2RCU1_9STRA7.660e-766.67Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S4D7W8_HETAK1.800e-662.50Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13790contigP-wetherbeei_contig13790:391..756 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LCE3
PFAMsMORN
Model size366
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.63e-10
EggNOG OGsCOG4642@1|root,KOG0231@2759|Eukaryota
Ec32 ortholog descriptionMORN motif
Ec32 orthologEc-26_004680.1
DescriptionMORN repeat-containing protein
Cds size366
COG categoryDZ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185997.558724-CDS-P-wetherbeei_contig13790:390..7561683185997.558724-CDS-P-wetherbeei_contig13790:390..756Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13790 391..756 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13790.1.1prot_P-wetherbeei_contig13790.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13790 391..756 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13790.1.1

>prot_P-wetherbeei_contig13790.1.1 ID=prot_P-wetherbeei_contig13790.1.1|Name=mRNA_P-wetherbeei_contig13790.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=122bp
QHGRGHLKLCNQFSYEGQWAEDAFEGRGTCEYGPAGGGCNQRYEGMFRAG
RRDGRGTLFFESGAYYEGRFRDDRIDGQGMLRIPEPIPDGSGEYGDWMVP
VQFQSDIERIHAKAGFDKEGL*
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mRNA from alignment at P-wetherbeei_contig13790:391..756+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13790.1.1 ID=mRNA_P-wetherbeei_contig13790.1.1|Name=mRNA_P-wetherbeei_contig13790.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=366bp|location=Sequence derived from alignment at P-wetherbeei_contig13790:391..756+ (Phaeothamnion wetherbeei SAG_119_79)
CAGCATGGCCGCGGCCACCTCAAGCTGTGCAACCAGTTCTCCTACGAGGG
GCAGTGGGCCGAGGATGCCTTTGAGGGCCGCGGCACATGCGAGTACGGCC
CGGCCGGCGGCGGATGCAACCAGCGGTACGAAGGAATGTTCCGTGCCGGG
CGGCGCGACGGCCGCGGCACGCTCTTCTTCGAGAGCGGCGCCTACTACGA
AGGTCGCTTCCGGGACGATCGGATAGACGGGCAGGGCATGCTCCGGATCC
CGGAACCGATCCCTGACGGGAGTGGAGAGTATGGCGACTGGATGGTTCCG
GTGCAGTTCCAGAGCGATATTGAGCGCATCCACGCCAAGGCCGGCTTCGA
CAAGGAGGGGCTGTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13790:391..756+

>mRNA_P-wetherbeei_contig13790.1.1 ID=mRNA_P-wetherbeei_contig13790.1.1|Name=mRNA_P-wetherbeei_contig13790.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=366bp|location=Sequence derived from alignment at P-wetherbeei_contig13790:391..756+ (Phaeothamnion wetherbeei SAG_119_79)
CAGCATGGCCGCGGCCACCTCAAGCTGTGCAACCAGTTCTCCTACGAGGG
GCAGTGGGCCGAGGATGCCTTTGAGGGCCGCGGCACATGCGAGTACGGCC
CGGCCGGCGGCGGATGCAACCAGCGGTACGAAGGAATGTTCCGTGCCGGG
CGGCGCGACGGCCGCGGCACGCTCTTCTTCGAGAGCGGCGCCTACTACGA
AGGTCGCTTCCGGGACGATCGGATAGACGGGCAGGGCATGCTCCGGATCC
CGGAACCGATCCCTGACGGGAGTGGAGAGTATGGCGACTGGATGGTTCCG
GTGCAGTTCCAGAGCGATATTGAGCGCATCCACGCCAAGGCCGGCTTCGA
CAAGGAGGGGCTGTAG
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