mRNA_P-wetherbeei_contig1379.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1379.3.1
Unique NamemRNA_P-wetherbeei_contig1379.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig1379.3.1 vs. uniprot
Match: L1JDL6_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JDL6_GUITC)

HSP 1 Score: 53.1 bits (126), Expect = 6.530e-5
Identity = 26/46 (56.52%), Postives = 33/46 (71.74%), Query Frame = 3 
Query:  264 RLWFPISFIQIILAKYAIACVLAYFVSEDFVTVAWDSAGVTTGPGT 401
            ++ F ++ I +IL KYA A +L  F SEDF  +AWDSAGVTTGP T
Sbjct:  458 KILFGVNIIYMILGKYAAASLLTIFASEDFTNIAWDSAGVTTGPVT 503
[Close]
BLAST of mRNA_P-wetherbeei_contig1379.3.1 vs. uniprot
Match: A0A7S4UL65_GUITH (Hypothetical protein n=2 Tax=Geminigeraceae TaxID=589343 RepID=A0A7S4UL65_GUITH)

HSP 1 Score: 53.1 bits (126), Expect = 6.850e-5
Identity = 26/46 (56.52%), Postives = 33/46 (71.74%), Query Frame = 3 
Query:  264 RLWFPISFIQIILAKYAIACVLAYFVSEDFVTVAWDSAGVTTGPGT 401
            ++ F ++ I +IL KYA A +L  F SEDF  +AWDSAGVTTGP T
Sbjct:  645 KILFGVNIIYMILGKYAAASLLTIFASEDFTNIAWDSAGVTTGPVT 690
[Close]
BLAST of mRNA_P-wetherbeei_contig1379.3.1 vs. uniprot
Match: A0A835Y9L5_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835Y9L5_9CHLO)

HSP 1 Score: 53.1 bits (126), Expect = 7.100e-5
Identity = 25/46 (54.35%), Postives = 33/46 (71.74%), Query Frame = 3 
Query:  264 RLWFPISFIQIILAKYAIACVLAYFVSEDFVTVAWDSAGVTTGPGT 401
            ++ F +  I IILAKY++A  + +F  EDF  +AWDSAGVTTGP T
Sbjct:  786 KILFGVPIIYIILAKYSVAVAITFFSPEDFTNIAWDSAGVTTGPVT 831
[Close]
BLAST of mRNA_P-wetherbeei_contig1379.3.1 vs. uniprot
Match: A0A2J7ZL99_9CHLO (Uncharacterized protein (Fragment) n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J7ZL99_9CHLO)

HSP 1 Score: 52.8 bits (125), Expect = 8.520e-5
Identity = 26/46 (56.52%), Postives = 31/46 (67.39%), Query Frame = 3 
Query:  264 RLWFPISFIQIILAKYAIACVLAYFVSEDFVTVAWDSAGVTTGPGT 401
            ++ F +  I IIL KYAIAC +     EDF  +AWDSAGVTTGP T
Sbjct:  445 KILFGVPLIYIILVKYAIACSITLISEEDFTAIAWDSAGVTTGPVT 490
[Close]
BLAST of mRNA_P-wetherbeei_contig1379.3.1 vs. uniprot
Match: A0A0M0K4S3_9EUKA (Uncharacterized protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0K4S3_9EUKA)

HSP 1 Score: 52.8 bits (125), Expect = 9.580e-5
Identity = 28/46 (60.87%), Postives = 31/46 (67.39%), Query Frame = 3 
Query:  264 RLWFPISFIQIILAKYAIACVLAYFVSEDFVTVAWDSAGVTTGPGT 401
            ++ F  S I  IL KY  A VL YF SED  T+AWDSAGVTTGP T
Sbjct:  929 KILFGASLIGFILGKYFAALVLTYFSSEDMATIAWDSAGVTTGPVT 974
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1379.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
L1JDL6_GUITC6.530e-556.52Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
A0A7S4UL65_GUITH6.850e-556.52Hypothetical protein n=2 Tax=Geminigeraceae TaxID=... [more]
A0A835Y9L5_9CHLO7.100e-554.35Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]
A0A2J7ZL99_9CHLO8.520e-556.52Uncharacterized protein (Fragment) n=1 Tax=Tetraba... [more]
A0A0M0K4S3_9EUKA9.580e-560.87Uncharacterized protein n=1 Tax=Chrysochromulina t... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1379contigP-wetherbeei_contig1379:3122..3991 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size560
Hectar predicted targeting categoryother localisation
Exons3
Cds size318
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185997.4691913-UTR-P-wetherbeei_contig1379:3121..32051683185997.4691913-UTR-P-wetherbeei_contig1379:3121..3205Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1379 3122..3205 -
1683185997.4775796-UTR-P-wetherbeei_contig1379:3290..33701683185997.4775796-UTR-P-wetherbeei_contig1379:3290..3370Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1379 3291..3370 -
1683185997.4859467-UTR-P-wetherbeei_contig1379:3595..36731683185997.4859467-UTR-P-wetherbeei_contig1379:3595..3673Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1379 3596..3673 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185997.4948452-CDS-P-wetherbeei_contig1379:3673..39911683185997.4948452-CDS-P-wetherbeei_contig1379:3673..3991Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1379 3674..3991 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1379.3.1prot_P-wetherbeei_contig1379.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1379 3674..3991 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1379.3.1

>prot_P-wetherbeei_contig1379.3.1 ID=prot_P-wetherbeei_contig1379.3.1|Name=mRNA_P-wetherbeei_contig1379.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=106bp
EWRKVRKPRNVGPASDGVCGIATESKMNLTGRASPELGRVTCLSEGMLQS
STGCILFSPLSLSVPSFCSLLLLVCRSPFRPSNLCAFSVSGSPFLSFRSS
WPSTP*
back to top

mRNA from alignment at P-wetherbeei_contig1379:3122..3991-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1379.3.1 ID=mRNA_P-wetherbeei_contig1379.3.1|Name=mRNA_P-wetherbeei_contig1379.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=870bp|location=Sequence derived from alignment at P-wetherbeei_contig1379:3122..3991- (Phaeothamnion wetherbeei SAG_119_79)
GAATGGCGGAAGGTCAGAAAGCCCCGGAACGTGGGCCCGGCATCGGACGG
CGTCTGCGGGATAGCAACGGAGAGCAAAATGAATTTAACCGGCCGAGCAT
CTCCAGAGCTAGGCCGTGTGACGTGTTTGTCGGAGGGCATGCTGCAGAGC
TCTACCGGCTGCATCTTATTCTCGCCTCTTTCGCTCTCTGTTCCGTCCTT
CTGCTCGCTTCTTCTCCTGGTCTGTCGCTCTCCTTTCCGCCCCTCTAATT
TGTGCGCGTTTTCCGTCTCTGGTTCCCCATTTCTTTCATTCAGATCATCC
TGGCCAAGTACGCCATAGCGTGCGTCCTCGCCTACTTTGTGTCGGAAGAC
TTTGTCACTGTCGCGTGGGACTCCGCGGGGGTGACGACTGGCCCCGGTGC
GCTGGCGCTCGCCTCTCGGCGCTTGCCTTTCGTTGGTTGTATTCTGTGGA
CCATGTGTCGATTCCTTGGTTGCTTCTGGCTGGTGGGGCTGTTTTTGCTG
TGCGCATCCTTCGCCTGGTGGTCGGGTCTGGTTGGTCGCAATTTGAAACA
CACTGTTAAGTCTAAGTCTATGCAGATGCCCTGTCATTGATAGGGTATGG
TGGGAAATTTTCGGTCATCAGGGACGAGCGGTGCTGGCGGCCATGCCAGG
CTGGTGAGACGCAGGGCGGCTTGGGACTGTTCTCCTTTGGCGACGAACCA
GGTAACGCCTACCGGCCGGCGTACATGCTCTCCTTTCTTTGTTCGAACGA
TCATTTCTCGCTCCCATCTCCCACCCGTCTTCGCAGTGACTGTGCCGTTC
GTGCTCTCGCTGGGCATCGGCTTCTCCGTGGCCGTTTCCAGCGCAGAGGG
CTTTGGCATGTTGACTGCGG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig1379:3122..3991-

>mRNA_P-wetherbeei_contig1379.3.1 ID=mRNA_P-wetherbeei_contig1379.3.1|Name=mRNA_P-wetherbeei_contig1379.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=318bp|location=Sequence derived from alignment at P-wetherbeei_contig1379:3122..3991- (Phaeothamnion wetherbeei SAG_119_79)
GAATGGCGGAAGGTCAGAAAGCCCCGGAACGTGGGCCCGGCATCGGACGG
CGTCTGCGGGATAGCAACGGAGAGCAAAATGAATTTAACCGGCCGAGCAT
CTCCAGAGCTAGGCCGTGTGACGTGTTTGTCGGAGGGCATGCTGCAGAGC
TCTACCGGCTGCATCTTATTCTCGCCTCTTTCGCTCTCTGTTCCGTCCTT
CTGCTCGCTTCTTCTCCTGGTCTGTCGCTCTCCTTTCCGCCCCTCTAATT
TGTGCGCGTTTTCCGTCTCTGGTTCCCCATTTCTTTCATTCAGATCATCC
TGGCCAAGTACGCCATAG
back to top