mRNA_P-wetherbeei_contig13789.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13789.2.1
Unique NamemRNA_P-wetherbeei_contig13789.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig13789.2.1 vs. uniprot
Match: A0A7C4TUV0_9HYPH (TIGR02444 family protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7C4TUV0_9HYPH)

HSP 1 Score: 157 bits (396), Expect = 1.500e-45
Identity = 87/161 (54.04%), Postives = 113/161 (70.19%), Query Frame = 1
Query:   31 VNPFWDYSLRLYSDPGVQKACIDLQDGSGIDVNVMLYMLWHAVNGRQLSDAEAAGVLAAIEPWRVDVVVPLRTARRNLKSPPAALDAPGTESLRSIVKKAELEAERLQQQALYNL-PLPAAGSKAQAGASRRQIATANLASYAVALGRPLAAAPLGVMLDA 510
             +PFW +SL +Y+DP V KAC+ LQD +G DVNV+LYMLW A  GR+LS  +  G++AA+E WR  VVVPLRTARR+L++PPAA+DA G+ +LR  VK  ELEAERLQQ+ALY L P+   G   +A  S    ATAN+A+YA  +GR    +   V+L A
Sbjct:    9 ASPFWRFSLAVYADPEVAKACLKLQDEAGADVNVLLYMLWAASRGRRLSADDVRGMVAAVEDWRRGVVVPLRTARRSLRAPPAAVDAEGSAALRLQVKMVELEAERLQQEALYRLQPVDEVG---RAEPSPEAAATANVAAYAEVIGRKFRGSATEVLLGA 166          
BLAST of mRNA_P-wetherbeei_contig13789.2.1 vs. uniprot
Match: A0A537SE31_9PROT (TIGR02444 family protein (Fragment) n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537SE31_9PROT)

HSP 1 Score: 130 bits (326), Expect = 1.740e-35
Identity = 64/125 (51.20%), Postives = 86/125 (68.80%), Query Frame = 1
Query:   10 QPGASSRVNPFWDYSLRLYSDPGVQKACIDLQDGSGIDVNVMLYMLWHAVNGRQLSDAEAAGVLAAIEPWRVDVVVPLRTARRNLKSPPAALDAPGTESLRSIVKKAELEAERLQQQALYNLPLP 384
            +P + S  +PFW +SLR Y  P V  ACI LQ+ +G+DVN++L++LWHA++ R LS  E + + A I PWR   VVPLRT RR LKSPPA +     E  R+ +K AELEAERLQQ+A++ L +P
Sbjct:    3 RPASPSAGSPFWRFSLRFYRQPEVADACITLQEQAGVDVNLLLFLLWHAIHKRALSTPEISELEARIAPWRNTTVVPLRTMRRALKSPPALVGGATAELFRTKIKAAELEAERLQQEAMHELAVP 127          
BLAST of mRNA_P-wetherbeei_contig13789.2.1 vs. uniprot
Match: A0A1Q4BK59_9HYPH (TIGR02444 family protein n=1 Tax=Rhizobiales bacterium 62-17 TaxID=1895810 RepID=A0A1Q4BK59_9HYPH)

HSP 1 Score: 129 bits (325), Expect = 5.620e-35
Identity = 77/159 (48.43%), Postives = 103/159 (64.78%), Query Frame = 1
Query:   34 NPFWDYSLRLYSDPGVQKACIDLQDGSGIDVNVMLYMLWHAVNGRQLSDAEAAGVLAAIEPWRVDVVVPLRTARRNLKSPPAALDAPGTESLRSIVKKAELEAERLQQQALYNL-PLPAAGSKAQAGASRRQIATANLASYAVALGRPLAAAPLGVMLD 507
            +PFW +SLR Y   GV  AC+ LQD  G+DVNV+L++L+ A  GR L+ A+ A + AA+E WR + VVPLR  RR L++PPAA+DA    +LR  +K  ELEAERL+Q+ALY L P+   G   QAG   +  A  N+A+YA  L      AP+ V+LD
Sbjct:    4 SPFWTFSLRFYRLDGVAPACLALQDERGVDVNVLLFLLFIATQGRGLTQADVAEIDAAMEDWRREAVVPLRAVRRFLRAPPAAIDAAQAAALRERIKAVELEAERLEQEALYALRPMADWG---QAGG--KAAAVDNVAAYAAHLQVSFPPAPIQVLLD 157          
BLAST of mRNA_P-wetherbeei_contig13789.2.1 vs. uniprot
Match: A0A1Q7BD75_9PROT (TIGR02444 family protein n=1 Tax=Alphaproteobacteria bacterium 13_2_20CM_2_64_7 TaxID=1803507 RepID=A0A1Q7BD75_9PROT)

HSP 1 Score: 130 bits (326), Expect = 5.940e-35
Identity = 73/148 (49.32%), Postives = 93/148 (62.84%), Query Frame = 1
Query:   13 PGASSRVNPFWDYSLRLYSDPGVQKACIDLQDGSGIDVNVMLYMLWHAVNGRQLSDAEAAGVLAAIEPWRVDVVVPLRTARRNLKSPPAALDAPGTESLRSIVKKAELEAERLQQQALYNLPLPAAGSKAQAGASRRQIATANLASYA 456
            P + S  +PFW +SLR Y    V  ACI LQ+ +GIDVN++L++LWHA   R LS  E A +   + PWR   VVPLRT RR LKSPPA +     E  R+ +K  ELEAERLQQ+AL++L +P  G  A   AS    A AN+A+YA
Sbjct:    4 PLSPSSGSPFWRFSLRFYRQREVADACITLQEEAGIDVNLLLFLLWHATQKRALSAPEVAELERRVAPWRNMTVVPLRTVRRALKSPPALVPGATAELFRTRIKAVELEAERLQQEALHDLAVPLLGKDA---ASLEAAARANIAAYA 148          
BLAST of mRNA_P-wetherbeei_contig13789.2.1 vs. uniprot
Match: A0A1H4LR41_9HYPH (TIGR02444 family protein n=1 Tax=Beijerinckia sp. 28-YEA-48 TaxID=1882748 RepID=A0A1H4LR41_9HYPH)

HSP 1 Score: 128 bits (321), Expect = 2.680e-34
Identity = 74/171 (43.27%), Postives = 106/171 (61.99%), Query Frame = 1
Query:   31 VNPFWDYSLRLYSDPGVQKACIDLQDGSGIDVNVMLYMLWHAVNGRQLSDAEAAGVLAAIEPWRVDVVVPLRTARRNLKSPPAALDAPGTESLRSIVKKAELEAERLQQQALYNL-PLPAAGSKAQAGASRRQIATANLASYAVALGRPLAAAPLGVMLDAFDAEATASRA 540
             +PFW +SLR Y   GV  AC+++QD  G+DVNV+L++L+   NGR LS A+ A + AA+  WR + VVPLR  RR L++PP ++DA    +LR  +K  ELEAERLQQ+AL+ L P+   G+   AGA      + N+A+Y   L   L AA + ++L+   +   AS A
Sbjct:    6 TSPFWTFSLRFYRLEGVAPACLEMQDLKGVDVNVLLFLLFLGHNGRALSQADMAAIDAAVAGWRAEAVVPLRAVRRFLRAPPPSVDATAAGALRERIKAVELEAERLQQEALFALRPIADWGTNGNAGAP-----SGNVAAYGAHLRTILPAAAVNLLLERLASLPAASSA 171          
BLAST of mRNA_P-wetherbeei_contig13789.2.1 vs. uniprot
Match: A0A6N7GZU9_9HYPH (TIGR02444 family protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A6N7GZU9_9HYPH)

HSP 1 Score: 128 bits (321), Expect = 2.680e-34
Identity = 75/152 (49.34%), Postives = 99/152 (65.13%), Query Frame = 1
Query:    1 MTDQPGASSRVNPFWDYSLRLYSDPGVQKACIDLQDGSGIDVNVMLYMLWHAVNGRQLSDAEAAGVLAAIEPWRVDVVVPLRTARRNLKSPPAALDAPGTESLRSIVKKAELEAERLQQQALYNL-PLPAAGSKAQAGASRRQIATANLASY 453
            MTD    SS+ +PFW +SL+ Y  P V  ACI LQ+ +G+DVN++L++LW A   R+LS A+   + A + PWR   V+PLR  RR LKSPPA LDAP  E+ R+ +K  ELEAERLQQ+A+Y L PL A  S      S  + A AN+A+Y
Sbjct:    1 MTDA-APSSQGSPFWRFSLQFYRLPKVADACIALQEEAGVDVNLLLFLLWQARQRRRLSGADVTVLEAQVAPWRDVTVIPLRGVRRALKSPPALLDAPTAEAFRNRIKAVELEAERLQQEAMYALVPLGADVS------SPEEAARANVAAY 145          
BLAST of mRNA_P-wetherbeei_contig13789.2.1 vs. uniprot
Match: A0A6L5FJ97_9HYPH (TIGR02444 family protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A6L5FJ97_9HYPH)

HSP 1 Score: 126 bits (317), Expect = 1.550e-33
Identity = 70/164 (42.68%), Postives = 98/164 (59.76%), Query Frame = 1
Query:   34 NPFWDYSLRLYSDPGVQKACIDLQDGSGIDVNVMLYMLWHAVNGRQLSDAEAAGVLAAIEPWRVDVVVPLRTARRNLKSPPAALDAPGTESLRSIVKKAELEAERLQQQALYNLPLPAAGSKAQAGASRRQIATANLASYAVALGRPLAAAPLGVMLDAFDAEA 525
            +PFW +SL  Y  P V  ACI LQD +G+DVN++ Y+LWHA   R+LS A+ A +   I PWR  VVVPLR  RR +K PP  ++A   E+ R+ +K  ELEAERLQQ+ALY++    A    +  +S  + A AN+ +Y     RP     +  ++ AF + A
Sbjct:   13 SPFWRFSLGFYRQPAVADACILLQDEAGVDVNLLFYLLWHASLERRLSHADVAAIEQRIAPWRDQVVVPLRAIRRAIKVPPPVIEAGTAEAYRTRIKGIELEAERLQQEALYDMAQ--ASRFGEPASSPEEAAHANINAYQAICARPFPDDAVAAVMAAFSSYA 174          
BLAST of mRNA_P-wetherbeei_contig13789.2.1 vs. uniprot
Match: A0A537UEQ8_9PROT (TIGR02444 family protein n=4 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537UEQ8_9PROT)

HSP 1 Score: 125 bits (315), Expect = 2.410e-33
Identity = 72/152 (47.37%), Postives = 95/152 (62.50%), Query Frame = 1
Query:   19 ASSRVNPFWDYSLRLYSDPGVQKACIDLQDGSGIDVNVMLYMLWHAVNGRQLSDAEAAGVLAAIEPWRVDVVVPLRTARRNLKSPPAALDAPGTESLRSIVKKAELEAERLQQQALYNLPLPAAGSKAQAGA-SRRQIATANLASYAVALGR 471
            ++S  +PFW +SLR Y   GV  ACI LQ+ +G+DVN++L++LWHA   R LS +E A +   I PWR   V+PLRT RR LKSPP  +D   +E  R+ +K  ELEAERLQQ+A++ L   A  S    GA S    A AN+ +YA   GR
Sbjct:    4 SASSGSPFWRFSLRFYRQDGVADACILLQEEAGVDVNLLLFLLWHARRKRTLSASEIAELERRIAPWREMTVIPLRTMRRALKSPPTLVDGATSELFRTRIKAIELEAERLQQEAMHEL---AGASTMGTGAPSLEAAARANIEAYAATCGR 152          
BLAST of mRNA_P-wetherbeei_contig13789.2.1 vs. uniprot
Match: A0A140GW05_9HYPH (Uncharacterized protein n=1 Tax=Rhodoplanes sp. Z2-YC6860 TaxID=674703 RepID=A0A140GW05_9HYPH)

HSP 1 Score: 125 bits (313), Expect = 4.680e-33
Identity = 73/169 (43.20%), Postives = 100/169 (59.17%), Query Frame = 1
Query:    7 DQPGASSRVNPFWDYSLRLYSDPGVQKACIDLQDGSGIDVNVMLYMLWHAVNGRQLSDAEAAGVLAAIEPWRVDVVVPLRTARRNLKSPPAALDAPGTESLRSIVKKAELEAERLQQQALYNLPLPAAGSKAQAGASRRQIATANLASYAVALGRPLAAAPLGVMLDAF 513
            D+P   S+ +PFW +S++ Y   GV  ACI+LQD +G+DVNV+ ++LW+A   R L+  +   V  AI PWR   VVPLR+ RR LKSPP+ +     E  R+ +K AELEAERLQQ+ALY +    +G+      S  Q A  +  SY   +G P    PL  +L AF
Sbjct:    5 DKPEPVSK-SPFWRFSIKFYGVAGVAPACIELQDQAGVDVNVLFFLLWNATERRALNADDVTKVENAIRPWREMTVVPLRSMRRALKSPPSVMTPEAAEGFRTRIKSAELEAERLQQEALYGVAT--SGTLGHPSPSPDQAAQDSFNSYQGVIG-PFPPGPLQTILSAF 169          
BLAST of mRNA_P-wetherbeei_contig13789.2.1 vs. uniprot
Match: A0A537ULI0_9PROT (TIGR02444 family protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537ULI0_9PROT)

HSP 1 Score: 122 bits (307), Expect = 4.310e-32
Identity = 71/152 (46.71%), Postives = 94/152 (61.84%), Query Frame = 1
Query:    4 TDQPGASSRVNPFWDYSLRLYSDPGVQKACIDLQDGSGIDVNVMLYMLWHAVNGRQLSDAEAAGVLAAIEPWRVDVVVPLRTARRNLKSPPAALDAPGTESLRSIVKKAELEAERLQQQALYNLPLPAA-GSKAQAGASRRQIATANLASYA 456
            ++ P  SS  +PFW +SLR Y    V  ACI LQ+ +G+DVN++L++LWHA   R LS A+ A +   I PWR   V+PLRT RR LKSPP  +     E  R+ +K  ELEAERLQQ+A++ L  PA  G +A    S    A AN+A+YA
Sbjct:    4 SETPSPSSG-SPFWRFSLRFYRQSEVADACIALQEQAGVDVNLLLFLLWHATQKRALSQADVAELERRIAPWRNTTVIPLRTMRRALKSPPTLVAGASAELFRTKIKAVELEAERLQQEAMHELAGPALLGVEAS---SLEDAARANVAAYA 151          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13789.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C4TUV0_9HYPH1.500e-4554.04TIGR02444 family protein n=1 Tax=Hyphomicrobiales ... [more]
A0A537SE31_9PROT1.740e-3551.20TIGR02444 family protein (Fragment) n=1 Tax=Alphap... [more]
A0A1Q4BK59_9HYPH5.620e-3548.43TIGR02444 family protein n=1 Tax=Rhizobiales bacte... [more]
A0A1Q7BD75_9PROT5.940e-3549.32TIGR02444 family protein n=1 Tax=Alphaproteobacter... [more]
A0A1H4LR41_9HYPH2.680e-3443.27TIGR02444 family protein n=1 Tax=Beijerinckia sp. ... [more]
A0A6N7GZU9_9HYPH2.680e-3449.34TIGR02444 family protein n=1 Tax=Hyphomicrobiales ... [more]
A0A6L5FJ97_9HYPH1.550e-3342.68TIGR02444 family protein n=1 Tax=Hyphomicrobiales ... [more]
A0A537UEQ8_9PROT2.410e-3347.37TIGR02444 family protein n=4 Tax=Alphaproteobacter... [more]
A0A140GW05_9HYPH4.680e-3343.20Uncharacterized protein n=1 Tax=Rhodoplanes sp. Z2... [more]
A0A537ULI0_9PROT4.310e-3246.71TIGR02444 family protein n=1 Tax=Alphaproteobacter... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13789contigP-wetherbeei_contig13789:1116..1664 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog266779.Meso_1092
PFAMsDUF2390
Model size549
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.31e-31
EggNOG OGsCOG5589@1|root,COG5589@2|Bacteria,1Q6UF@1224|Proteobacteria,2VCX3@28211|Alphaproteobacteria,43QKZ@69277|Phyllobacteriaceae
DescriptionProtein of unknown function (DUF2390)
Cds size549
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185997.4258168-CDS-P-wetherbeei_contig13789:1115..16641683185997.4258168-CDS-P-wetherbeei_contig13789:1115..1664Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13789 1116..1664 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13789.2.1prot_P-wetherbeei_contig13789.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13789 1116..1664 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13789.2.1

>prot_P-wetherbeei_contig13789.2.1 ID=prot_P-wetherbeei_contig13789.2.1|Name=mRNA_P-wetherbeei_contig13789.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=183bp
MTDQPGASSRVNPFWDYSLRLYSDPGVQKACIDLQDGSGIDVNVMLYMLW
HAVNGRQLSDAEAAGVLAAIEPWRVDVVVPLRTARRNLKSPPAALDAPGT
ESLRSIVKKAELEAERLQQQALYNLPLPAAGSKAQAGASRRQIATANLAS
YAVALGRPLAAAPLGVMLDAFDAEATASRAIR*
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mRNA from alignment at P-wetherbeei_contig13789:1116..1664-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13789.2.1 ID=mRNA_P-wetherbeei_contig13789.2.1|Name=mRNA_P-wetherbeei_contig13789.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=549bp|location=Sequence derived from alignment at P-wetherbeei_contig13789:1116..1664- (Phaeothamnion wetherbeei SAG_119_79)
ATGACAGATCAGCCCGGCGCATCGAGCCGCGTCAACCCGTTCTGGGACTA CTCGCTGCGGCTCTATTCCGACCCAGGCGTGCAGAAGGCCTGTATCGACC TGCAGGACGGCTCGGGCATCGACGTGAACGTCATGCTCTACATGCTGTGG CACGCGGTCAACGGCCGCCAACTGTCCGATGCAGAGGCGGCCGGGGTGCT CGCTGCCATCGAGCCCTGGCGGGTCGACGTCGTGGTGCCGCTCAGAACCG CGCGCCGCAATTTGAAATCCCCGCCCGCGGCCCTGGATGCCCCAGGGACG GAGAGCTTGCGCTCCATCGTCAAGAAGGCGGAGTTGGAGGCCGAACGGCT GCAACAACAGGCGCTCTACAACCTCCCGCTCCCAGCAGCAGGTTCGAAGG CGCAGGCTGGAGCAAGCCGCCGCCAGATTGCCACTGCGAATCTCGCGTCG TACGCGGTCGCACTCGGACGGCCATTGGCGGCGGCCCCGCTCGGTGTCAT GCTGGACGCGTTCGATGCCGAGGCAACGGCGTCTCGGGCGATCCGTTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13789:1116..1664-

>mRNA_P-wetherbeei_contig13789.2.1 ID=mRNA_P-wetherbeei_contig13789.2.1|Name=mRNA_P-wetherbeei_contig13789.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=549bp|location=Sequence derived from alignment at P-wetherbeei_contig13789:1116..1664- (Phaeothamnion wetherbeei SAG_119_79)
ATGACAGATCAGCCCGGCGCATCGAGCCGCGTCAACCCGTTCTGGGACTA
CTCGCTGCGGCTCTATTCCGACCCAGGCGTGCAGAAGGCCTGTATCGACC
TGCAGGACGGCTCGGGCATCGACGTGAACGTCATGCTCTACATGCTGTGG
CACGCGGTCAACGGCCGCCAACTGTCCGATGCAGAGGCGGCCGGGGTGCT
CGCTGCCATCGAGCCCTGGCGGGTCGACGTCGTGGTGCCGCTCAGAACCG
CGCGCCGCAATTTGAAATCCCCGCCCGCGGCCCTGGATGCCCCAGGGACG
GAGAGCTTGCGCTCCATCGTCAAGAAGGCGGAGTTGGAGGCCGAACGGCT
GCAACAACAGGCGCTCTACAACCTCCCGCTCCCAGCAGCAGGTTCGAAGG
CGCAGGCTGGAGCAAGCCGCCGCCAGATTGCCACTGCGAATCTCGCGTCG
TACGCGGTCGCACTCGGACGGCCATTGGCGGCGGCCCCGCTCGGTGTCAT
GCTGGACGCGTTCGATGCCGAGGCAACGGCGTCTCGGGCGATCCGTTAA
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