mRNA_P-wetherbeei_contig13782.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13782.1.1
Unique NamemRNA_P-wetherbeei_contig13782.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig13782.1.1 vs. uniprot
Match: I0YY40_COCSC (SpoU_methylase domain-containing protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YY40_COCSC)

HSP 1 Score: 90.1 bits (222), Expect = 6.900e-19
Identity = 57/168 (33.93%), Postives = 85/168 (50.60%), Query Frame = 1
Query:    4 FLAIENPSASNNLGDILRTAAAYAVVEVLLVGYGRCAMHGSHGAAKYVTTAHFSDWPSAIANLRNERKCEVIALLPKRPEVGAASDGSHGGAEAATPPHFAVYTRPFSGDTALLLFHGGQ--PPLDVLRLCDTAVYVEQ-ATSLVRLPLPIVAAVALHHFTAWAQYGE 498
            +L + N S  +N+G ++R+AAA++V EV LVG  +    GSHG+A YV   HF         L+ ++ C ++ +     E+          AE A P    ++  PFSG TA +L + G    P  V +LCD  VY+ Q       L + + A++ L HF AWA Y E
Sbjct:   31 YLIVHNVSKRHNIGTLVRSAAAFSVTEVCLVGARQFNTFGSHGSADYVNYRHFPSLQECCHYLKQDKGCRIMGV-----EI----------AEDAQP----IHAHPFSGPTAFMLGNEGSGLSPQQV-QLCDAFVYIPQYGAGTASLNVTVAASIVLQHFAAWAGYAE 178          
BLAST of mRNA_P-wetherbeei_contig13782.1.1 vs. uniprot
Match: A0A8J9SQG2_9CHLO (Probable tRNA (Guanosine(18)-2'-O)-methyltransferase n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9SQG2_9CHLO)

HSP 1 Score: 86.7 bits (213), Expect = 1.630e-17
Identity = 56/168 (33.33%), Postives = 81/168 (48.21%), Query Frame = 1
Query:    4 FLAIENPSASNNLGDILRTAAAYAVVEVLLVGYGRCAMHGSHGAAKYVTTAHFSDWPSAIANLRNERKCEVIALLPKRPEVGAASDGSHGGAEAATPPHFAVYTRPFSGDTALLLFH--GGQPPLDVLRLCDTAVYVEQ-ATSLVRLPLPIVAAVALHHFTAWAQYGE 498
            +L + N S  +N+G ++R+AAA+ V EV LVG  +    GSHG+A YV   HF         L+ +R C V+ +     E+           E A P    ++  PFSG TA +L +   G  P    +LCD  VY+ Q       L + + A++ L HF  WA Y E
Sbjct:   36 YLIVHNVSKRHNIGTLVRSAAAFGVTEVCLVGARQFNTFGSHGSADYVKYRHFPSLQECCRYLKEDRGCRVMGV-----EI----------TEDAQP----IHAHPFSGPTAFMLGNEGSGMSPQQA-QLCDAFVYIPQYGAGTASLNVTVAASIVLQHFAVWAGYPE 183          
BLAST of mRNA_P-wetherbeei_contig13782.1.1 vs. uniprot
Match: A0A5J4Y8A5_9CHLO (OBP33pep like n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4Y8A5_9CHLO)

HSP 1 Score: 84.7 bits (208), Expect = 3.030e-17
Identity = 51/167 (30.54%), Postives = 80/167 (47.90%), Query Frame = 1
Query:    4 FLAIENPSASNNLGDILRTAAAYAVVEVLLVGYGRCAMHGSHGAAKYVTTAHFSDWPSAIANLRNERKCEVIALLPKRPEVGAASDGSHGGAEAATPPHFAVYTRPFSGDTALLLFHGGQP-PLDVLRLCDTAVYVEQ-ATSLVRLPLPIVAAVALHHFTAWAQYGE 498
            ++ + N +  +N+G + R+A A+ V ++ LVG       GSHG+A +V  A+F+        LRNE+ C ++ +     E+  A+               AV   PF G TA +L + G       L+LCDT VY+ Q       L + +  ++ LHHF  WA Y E
Sbjct:   16 YVIVHNVAKKHNIGTLARSATAFNVAKICLVGSRHYNTFGSHGSAAHVPLAYFASLDDCCTWLRNEKGCAIVGI-----EITEAAQ--------------AVNKHPFEGSTAFMLGNEGTGLSAAQLKLCDTFVYIPQHGQGTASLNVTVATSIVLHHFAIWAGYQE 163          
BLAST of mRNA_P-wetherbeei_contig13782.1.1 vs. uniprot
Match: A0A8J4BLB6_9CHLO (SpoU_methylase domain-containing protein n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4BLB6_9CHLO)

HSP 1 Score: 85.1 bits (209), Expect = 3.510e-17
Identity = 55/167 (32.93%), Postives = 81/167 (48.50%), Query Frame = 1
Query:    4 FLAIENPSASNNLGDILRTAAAYAVVEVLLVGYGRCAMHGSHGAAKYVTTAHFSDWPSAIANLRNERKCEVIALLPKRPEVGAASDGSHGGAEAATPPHFAVYTRPFSGDTALLLFHGGQPPLD-VLRLCDTAVYVEQ-ATSLVRLPLPIVAAVALHHFTAWAQYGE 498
            F+   + S  +N+G ILR+A A+ V EV LVG  +    GSHG+  +V   HF      + +L+N  +C V+ +     E+           E A P    V   PF+G TA LL + GQ   +  + LCD  +Y+ Q       L + + A++ LHHF  WA Y E
Sbjct:   22 FIITHSVSKRHNIGTILRSATAFGVKEVCLVGSRQFNTFGSHGSDAHVALKHFHTLQHCVQHLKNVERCRVLGI-----EI----------CEGALP----VQDHPFTGPTAFLLGNEGQGLSERQMALCDGFLYIPQHGAGTASLNVAVAASIVLHHFAVWAGYPE 169          
BLAST of mRNA_P-wetherbeei_contig13782.1.1 vs. uniprot
Match: A0A8J4FB88_9CHLO (SpoU_methylase domain-containing protein (Fragment) n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4FB88_9CHLO)

HSP 1 Score: 83.2 bits (204), Expect = 2.430e-16
Identity = 55/167 (32.93%), Postives = 80/167 (47.90%), Query Frame = 1
Query:    4 FLAIENPSASNNLGDILRTAAAYAVVEVLLVGYGRCAMHGSHGAAKYVTTAHFSDWPSAIANLRNERKCEVIALLPKRPEVGAASDGSHGGAEAATPPHFAVYTRPFSGDTALLLFHGGQPPLD-VLRLCDTAVYVEQ-ATSLVRLPLPIVAAVALHHFTAWAQYGE 498
            F+   + S  +N+G ILR+A A+ V EV LVG  +    GSHG+  +V   HF      + +L++   C V+ +     E+           E A P    V   PF+G TA LL + GQ   +  + LCD  VY+ Q       L + + A++ LHHF  WA Y E
Sbjct:   24 FIITHSVSKRHNIGTILRSATAFGVKEVCLVGSRQFNTFGSHGSDAHVALKHFHTLQQCVQHLKDVEGCRVLGI-----EI----------CEGALP----VQEHPFTGATAFLLGNEGQGLSERQMALCDGFVYIPQHGAGTASLNVAVAASIVLHHFAVWAAYPE 171          
BLAST of mRNA_P-wetherbeei_contig13782.1.1 vs. uniprot
Match: A0A835STC3_CHLIN (SpoU_methylase domain-containing protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835STC3_CHLIN)

HSP 1 Score: 83.2 bits (204), Expect = 3.830e-16
Identity = 54/167 (32.34%), Postives = 79/167 (47.31%), Query Frame = 1
Query:    4 FLAIENPSASNNLGDILRTAAAYAVVEVLLVGYGRCAMHGSHGAAKYVTTAHFSDWPSAIANLRNERKCEVIALLPKRPEVGAASDGSHGGAEAATPPHFAVYTRPFSGDTALLLFHGGQPPLD-VLRLCDTAVYVEQ-ATSLVRLPLPIVAAVALHHFTAWAQYGE 498
            ++   + S  +N+G I+R+A A+ V EV LVG  +    GSHG+  +V   HF      +  L+    C V+ +     E+           E A P    V+  PF+G TA LL + GQ   D  + LCD  VY+ Q       L + + A++ LHHF  WA Y E
Sbjct:   31 YIITHSVSKRHNIGTIVRSATAFGVKEVCLVGSRQFNTFGSHGSDAHVAFRHFDTLAKCVQQLKEVEGCRVLGV-----EI----------CEGAQP----VHEHPFTGPTAFLLGNEGQGMTDRQMALCDGFVYIPQHGAGTASLNVAVAASIVLHHFAIWAAYPE 178          
BLAST of mRNA_P-wetherbeei_contig13782.1.1 vs. uniprot
Match: A0A5B8MEF0_9CHLO (SpoU-type tRNA/rRNA methyltransferase n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MEF0_9CHLO)

HSP 1 Score: 81.6 bits (200), Expect = 7.110e-16
Identity = 49/169 (28.99%), Postives = 77/169 (45.56%), Query Frame = 1
Query:    4 FLAIENPSASNNLGDILRTAAAYAVVEVLLVGYGRCAMHGSHGAAKYVTTAHFSDWPSAIANLRNERKCEVIALLPKRPEVGAASDGSHGGAEAATPPHFAVYTRPFSGDTALLLFHGGQPPLD-VLRLCDTAVYVEQ-ATSLVRLPLPIVAAVALHHFTAWAQYGEVR 504
            +L + N S  +N+G + R+A A+ V E+ LVG  R    G+HG+  Y+   HF         L+ E  C ++ +     E+           E A     AV+  PF G+TA +L + G    +  + +CD  VY+ Q       L + +  ++ LHHF  WA Y E  
Sbjct:   13 YLIVHNVSKKHNIGTLARSAVAFGVHEICLVGSNRFNTFGNHGSVNYIKLKHFESLEKVRGYLKEECGCRILGV-----EI----------VEGAK----AVHDHPFEGNTAFMLGNEGDGMTENQMEICDGFVYIPQHGNGTASLNVTVAGSIVLHHFGVWANYTETE 162          
BLAST of mRNA_P-wetherbeei_contig13782.1.1 vs. uniprot
Match: A0A2K3DT38_CHLRE (SpoU_methylase domain-containing protein n=2 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3DT38_CHLRE)

HSP 1 Score: 82.4 bits (202), Expect = 7.340e-16
Identity = 54/167 (32.34%), Postives = 79/167 (47.31%), Query Frame = 1
Query:    4 FLAIENPSASNNLGDILRTAAAYAVVEVLLVGYGRCAMHGSHGAAKYVTTAHFSDWPSAIANLRNERKCEVIALLPKRPEVGAASDGSHGGAEAATPPHFAVYTRPFSGDTALLLFHGGQPPLD-VLRLCDTAVYVEQ-ATSLVRLPLPIVAAVALHHFTAWAQYGE 498
            ++   + S  +N+G I+R+A A+ V EV LVG  +    GSHG+  +V   HF      + +L+    C V+ +     E+           E A P    V   PF+G TA LL + GQ   D  + LCD  VY+ Q       L + + A++ LHHF  WA Y E
Sbjct:   32 YIITHSVSKRHNIGTIVRSATAFGVKEVCLVGSRQFNTFGSHGSDAHVAFRHFDTLAKCVQHLKEVEGCRVLGV-----EI----------CEGALP----VQEHPFTGPTAFLLGNEGQGMTDRQMALCDGFVYIPQHGAGTASLNVAVAASIVLHHFAIWAAYPE 179          
BLAST of mRNA_P-wetherbeei_contig13782.1.1 vs. uniprot
Match: A0A835TL48_9CHLO (SpoU_methylase domain-containing protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835TL48_9CHLO)

HSP 1 Score: 81.6 bits (200), Expect = 1.510e-15
Identity = 53/167 (31.74%), Postives = 79/167 (47.31%), Query Frame = 1
Query:    4 FLAIENPSASNNLGDILRTAAAYAVVEVLLVGYGRCAMHGSHGAAKYVTTAHFSDWPSAIANLRNERKCEVIALLPKRPEVGAASDGSHGGAEAATPPHFAVYTRPFSGDTALLLFHGGQPPLD-VLRLCDTAVYVEQ-ATSLVRLPLPIVAAVALHHFTAWAQYGE 498
            ++   + S  +N+G I+R+A A+ V EV LVG  +    GSHG+  +V   HF      + +L+    C V+ +     E+           E A P    V   PF+G TA LL + GQ   +  + LCD  VY+ Q       L + + A++ LHHF  WA Y E
Sbjct:   34 YIITHSVSKRHNIGTIVRSATAFGVKEVCLVGSRQFNTFGSHGSDAHVAFRHFDTLAKCVQHLKEVEGCRVLGI-----EI----------CEGALP----VQEHPFTGPTAFLLGNEGQGMTERQMALCDGFVYIPQHGAGTASLNVAVAASIVLHHFAIWAGYSE 181          
BLAST of mRNA_P-wetherbeei_contig13782.1.1 vs. uniprot
Match: A0A0M0JDS1_9EUKA (tRNA rRNA methyltransferase family protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JDS1_9EUKA)

HSP 1 Score: 80.1 bits (196), Expect = 4.220e-15
Identity = 58/169 (34.32%), Postives = 81/169 (47.93%), Query Frame = 1
Query:    4 FLAIENPSASNNLGDILRTAAAYAVVEVLLVGYGRCAMHGSHGAAKYVTTAHFSDWPSAIANLRNERKCEVIALLPKRPEVGAASDGSHGGAEAATPPHFAVYTRPFSGDTALLLF---HGGQPPLDVLRLCDTAVYVEQ-ATSLVRLPLPIVAAVALHHFTAWAQYGE 498
             L + N S   N G+++RTAAA  V E+++VG  +    GSHG   ++  +HF  +  A+A +R+ R              GA   G    A+AA      V T PFSG TA L+    HG  PP   L  CD  VY+ Q + +   L +    AV LHHF  +A + E
Sbjct:   17 ILVLHNVSKKKNFGELIRTAAALGVCEIIIVGAQKLNSFGSHGTCGHMRFSHFDRFADAVAYVRSVR--------------GARLCGVEITADAAP-----VQTHPFSGTTAFLMGNEGHGLTPPQ--LAACDHFVYIPQHSDATASLNVNAACAVVLHHFAMYAAFPE 164          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13782.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
I0YY40_COCSC6.900e-1933.93SpoU_methylase domain-containing protein n=1 Tax=C... [more]
A0A8J9SQG2_9CHLO1.630e-1733.33Probable tRNA (Guanosine(18)-2'-O)-methyltransfera... [more]
A0A5J4Y8A5_9CHLO3.030e-1730.54OBP33pep like n=1 Tax=Trebouxia sp. A1-2 TaxID=260... [more]
A0A8J4BLB6_9CHLO3.510e-1732.93SpoU_methylase domain-containing protein n=1 Tax=V... [more]
A0A8J4FB88_9CHLO2.430e-1632.93SpoU_methylase domain-containing protein (Fragment... [more]
A0A835STC3_CHLIN3.830e-1632.34SpoU_methylase domain-containing protein n=1 Tax=C... [more]
A0A5B8MEF0_9CHLO7.110e-1628.99SpoU-type tRNA/rRNA methyltransferase n=1 Tax=Chlo... [more]
A0A2K3DT38_CHLRE7.340e-1632.34SpoU_methylase domain-containing protein n=2 Tax=C... [more]
A0A835TL48_9CHLO1.510e-1531.74SpoU_methylase domain-containing protein n=1 Tax=C... [more]
A0A0M0JDS1_9EUKA4.220e-1534.32tRNA rRNA methyltransferase family protein n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13782contigP-wetherbeei_contig13782:138..758 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FM64
PFAMsPeptidase_S8,SpoU_methylase
Model size522
Max annot lvl2759|Eukaryota
KEGG koko:K08653,ko:K10879
KEGG Pathwayko03440,ko04141,map03440,map04141
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.02e-20
EggNOG OGsCOG0566@1|root,KOG0838@2759|Eukaryota
Ec32 ortholog descriptiontRNA (guanine-N1-)-methyltransferase, N-terminal
Ec32 orthologEc-16_004910.1
EC3.4.21.112
DescriptionrRNA methyltransferase
Cds size522
COG categoryJ
BRITEko00000,ko00001,ko01000,ko01002,ko03110,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185997.2754498-CDS-P-wetherbeei_contig13782:137..5181683185997.2754498-CDS-P-wetherbeei_contig13782:137..518Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13782 138..518 -
1683185997.2870352-CDS-P-wetherbeei_contig13782:617..7581683185997.2870352-CDS-P-wetherbeei_contig13782:617..758Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13782 618..758 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13782.1.1prot_P-wetherbeei_contig13782.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13782 138..758 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13782.1.1

>prot_P-wetherbeei_contig13782.1.1 ID=prot_P-wetherbeei_contig13782.1.1|Name=mRNA_P-wetherbeei_contig13782.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=174bp
VFLAIENPSASNNLGDILRTAAAYAVVEVLLVGYGRCAMHGSHGAAKYVT
TAHFSDWPSAIANLRNERKCEVIALLPKRPEVGAASDGSHGGAEAATPPH
FAVYTRPFSGDTALLLFHGGQPPLDVLRLCDTAVYVEQATSLVRLPLPIV
AAVALHHFTAWAQYGEVRFSLCF*
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mRNA from alignment at P-wetherbeei_contig13782:138..758-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13782.1.1 ID=mRNA_P-wetherbeei_contig13782.1.1|Name=mRNA_P-wetherbeei_contig13782.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=621bp|location=Sequence derived from alignment at P-wetherbeei_contig13782:138..758- (Phaeothamnion wetherbeei SAG_119_79)
GTGTTCTTGGCAATTGAAAACCCCTCAGCTTCAAATAACCTCGGCGACAT CCTCCGTACTGCAGCGGCCTACGCGGTTGTCGAGGTGCTGTTGGTGGGCT ATGGCCGCTGCGCAATGCACGGATCGCACGGCGCGGCCAAAGTGAGTGCG GAGGAAGGATGAACCAAGCAAAGCTTCGCCAACCTCTCACTCTTTTCGCT CCTGCCGCACCACTGAATGCCTTCACGTCTTTCGCGACAGTACGTTACGA CTGCACACTTTTCGGACTGGCCATCGGCCATCGCGAATCTGCGCAATGAA CGGAAATGCGAAGTCATCGCGCTACTGCCGAAACGTCCTGAGGTGGGTGC TGCATCAGATGGAAGCCACGGCGGCGCCGAGGCCGCTACGCCGCCGCACT TTGCGGTGTACACGCGGCCATTCAGCGGCGACACGGCGCTGCTACTGTTC CACGGCGGCCAACCCCCTTTGGACGTGCTGCGCCTGTGTGACACTGCGGT CTATGTGGAACAAGCGACGTCGCTGGTACGCCTGCCGCTGCCGATCGTCG CCGCCGTCGCCCTCCATCACTTTACGGCTTGGGCGCAGTACGGCGAGGTG AGGTTCTCTTTATGCTTTTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13782:138..758-

>mRNA_P-wetherbeei_contig13782.1.1 ID=mRNA_P-wetherbeei_contig13782.1.1|Name=mRNA_P-wetherbeei_contig13782.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=522bp|location=Sequence derived from alignment at P-wetherbeei_contig13782:138..758- (Phaeothamnion wetherbeei SAG_119_79)
GTGTTCTTGGCAATTGAAAACCCCTCAGCTTCAAATAACCTCGGCGACAT
CCTCCGTACTGCAGCGGCCTACGCGGTTGTCGAGGTGCTGTTGGTGGGCT
ATGGCCGCTGCGCAATGCACGGATCGCACGGCGCGGCCAAATACGTTACG
ACTGCACACTTTTCGGACTGGCCATCGGCCATCGCGAATCTGCGCAATGA
ACGGAAATGCGAAGTCATCGCGCTACTGCCGAAACGTCCTGAGGTGGGTG
CTGCATCAGATGGAAGCCACGGCGGCGCCGAGGCCGCTACGCCGCCGCAC
TTTGCGGTGTACACGCGGCCATTCAGCGGCGACACGGCGCTGCTACTGTT
CCACGGCGGCCAACCCCCTTTGGACGTGCTGCGCCTGTGTGACACTGCGG
TCTATGTGGAACAAGCGACGTCGCTGGTACGCCTGCCGCTGCCGATCGTC
GCCGCCGTCGCCCTCCATCACTTTACGGCTTGGGCGCAGTACGGCGAGGT
GAGGTTCTCTTTATGCTTTTGA
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