mRNA_P-wetherbeei_contig13761.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13761.1.1
Unique NamemRNA_P-wetherbeei_contig13761.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig13761.1.1 vs. uniprot
Match: A0A6H5KGE8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGE8_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 1.780e-8
Identity = 28/40 (70.00%), Postives = 30/40 (75.00%), Query Frame = 1 
Query:    4 YVGLLAPGGNLLHYRWATPNSGMTGRELRRGCGVSFSCLD 123
            YVG+L  GG+ L Y  ATPNS M GRELRRG GVS SCLD
Sbjct:  452 YVGVLQSGGHALLYEAATPNSAMKGRELRRGEGVSLSCLD 491
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13761.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KGE8_9PHAE1.780e-870.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13761contigP-wetherbeei_contig13761:84..227 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LEV4
PFAMsArfGap,C2
Model size144
Max annot lvl2759|Eukaryota
KEGG koko:K12486
KEGG Pathwayko04144,map04144
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue1.4e-08
EggNOG OGsKOG1030@1|root,KOG1030@2759|Eukaryota
DescriptionGTPase activator activity
Cds size144
COG categoryDTZ
BRITEko00000,ko00001,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185996.7332308-CDS-P-wetherbeei_contig13761:83..2271683185996.7332308-CDS-P-wetherbeei_contig13761:83..227Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13761 84..227 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13761.1.1prot_P-wetherbeei_contig13761.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13761 84..227 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13761.1.1

>prot_P-wetherbeei_contig13761.1.1 ID=prot_P-wetherbeei_contig13761.1.1|Name=mRNA_P-wetherbeei_contig13761.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=48bp
IYVGLLAPGGNLLHYRWATPNSGMTGRELRRGCGVSFSCLDQLQTRVI
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mRNA from alignment at P-wetherbeei_contig13761:84..227+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13761.1.1 ID=mRNA_P-wetherbeei_contig13761.1.1|Name=mRNA_P-wetherbeei_contig13761.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=144bp|location=Sequence derived from alignment at P-wetherbeei_contig13761:84..227+ (Phaeothamnion wetherbeei SAG_119_79)
ATCTACGTCGGGCTGCTGGCGCCGGGCGGCAACCTCCTCCATTACCGCTG
GGCAACCCCCAACAGCGGCATGACTGGCCGGGAGCTGCGGCGCGGCTGCG
GCGTCAGCTTCAGCTGCCTCGACCAGCTCCAGACGCGCGTCATC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13761:84..227+

>mRNA_P-wetherbeei_contig13761.1.1 ID=mRNA_P-wetherbeei_contig13761.1.1|Name=mRNA_P-wetherbeei_contig13761.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=144bp|location=Sequence derived from alignment at P-wetherbeei_contig13761:84..227+ (Phaeothamnion wetherbeei SAG_119_79)
ATCTACGTCGGGCTGCTGGCGCCGGGCGGCAACCTCCTCCATTACCGCTG
GGCAACCCCCAACAGCGGCATGACTGGCCGGGAGCTGCGGCGCGGCTGCG
GCGTCAGCTTCAGCTGCCTCGACCAGCTCCAGACGCGCGTCATC
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