mRNA_P-wetherbeei_contig13756.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13756.1.1
Unique NamemRNA_P-wetherbeei_contig13756.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig13756.1.1 vs. uniprot
Match: A0A5C7K0K6_9RHOO (Proline--tRNA ligase (Fragment) n=1 Tax=Rhodocyclaceae bacterium TaxID=1898103 RepID=A0A5C7K0K6_9RHOO)

HSP 1 Score: 370 bits (949), Expect = 1.340e-126
Identity = 174/246 (70.73%), Postives = 205/246 (83.33%), Query Frame = 1 
Query:    1 AHMHCVPGYIGPVGTSG--LRVIADRSVAALADFVCGANDAGYHLTGVNWGRDLPEPALVADIRNVVAGDPSPDGKGPLELCRGIEVGHIFQLRTKYSEAMKAVFLDEKGESRPMEMGCYGIGITRIVAAAIEQGHDARGAIFPAPIAPFEACVVPIGYHKSAEVRAAADKLYADLLAAGVDALLDDRDERPGSMFADMELVGIPHRLVVSDKGIAAGTVEYKGRRDEKPSMLPQGEAVATVRAKL 732
            A + C PGYIGPVG     +R+IADR+VAA++DFVCGAN  G+HLTGVNWGRDLPEP+LVADIRNVV GDPSPD KG L+LCRGIEVGHIFQLRTKYSEAM+  FLDE+G+ + MEMGCYGIG++RIV AAIEQG+D RG +FPA IAPFEAC+VP+GYHKS  VRAAAD L ADL AAG+D +LDDR+ERPG MFADMEL+GIPHR+VV ++G+  G +EYKGRRD    M+P G  +A +R KL
Sbjct:   59 AALGCKPGYIGPVGIDANKVRIIADRTVAAMSDFVCGANAEGFHLTGVNWGRDLPEPSLVADIRNVVVGDPSPDDKGSLDLCRGIEVGHIFQLRTKYSEAMQCTFLDEQGKEQVMEMGCYGIGVSRIVGAAIEQGNDERGIVFPAAIAPFEACIVPMGYHKSDAVRAAADNLLADLKAAGIDVVLDDRNERPGVMFADMELIGIPHRIVVGERGLKEGQLEYKGRRDADAQMIPAGNILAFLREKL 304
[Close]
BLAST of mRNA_P-wetherbeei_contig13756.1.1 vs. uniprot
Match: A0A521YJ59_9PROT (Proline--tRNA ligase (Fragment) n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A521YJ59_9PROT)

HSP 1 Score: 371 bits (952), Expect = 4.450e-126
Identity = 176/241 (73.03%), Postives = 205/241 (85.06%), Query Frame = 1 
Query:    4 HMHCVPGYIGPVGTS-GLRVIADRSVAALADFVCGANDAGYHLTGVNWGRDLPEPALVADIRNVVAGDPSPDGKGPLELCRGIEVGHIFQLRTKYSEAMKAVFLDEKGESRPMEMGCYGIGITRIVAAAIEQGHDARGAIFPAPIAPFEACVVPIGYHKSAEVRAAADKLYADLLAAGVDALLDDRDERPGSMFADMELVGIPHRLVVSDKGIAAGTVEYKGRRDEKPSMLPQGEAVATVR 723
            H+ C  GYIGPVGT     + ADR+VA ++DFVCGAN+AGYHLTGVNWGRDL EP  VAD+RNVV+GDPSPDGKG LE+ RGIEVGHIFQLR KYSEA+KAVFLDEKG  RPMEMGCYGIG+TR+VAAAIEQ HD RG +FPAP+APF+ CVVPIGY KSA VR AA++L+ +L AAG+D LLDDRDERPG +FADM+L+GIPHR+V+SD+G+AAGT EYKGRRDEKP  LP  E VA ++
Sbjct:  131 HLRCRAGYIGPVGTEVSAAIYADRTVAQMSDFVCGANEAGYHLTGVNWGRDLSEPN-VADLRNVVSGDPSPDGKGRLEIVRGIEVGHIFQLRAKYSEALKAVFLDEKGAPRPMEMGCYGIGVTRVVAAAIEQNHDERGIVFPAPMAPFQVCVVPIGYRKSAAVREAAERLHDELEAAGIDVLLDDRDERPGVLFADMDLIGIPHRVVLSDRGLAAGTAEYKGRRDEKPRDLPLKEVVAQLK 370
[Close]
BLAST of mRNA_P-wetherbeei_contig13756.1.1 vs. uniprot
Match: A0A521XD23_9PROT (Proline--tRNA ligase (Fragment) n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A521XD23_9PROT)

HSP 1 Score: 365 bits (936), Expect = 1.620e-125
Identity = 168/244 (68.85%), Postives = 203/244 (83.20%), Query Frame = 1 
Query:    4 HMHCVPGYIGPVGT-SGLRVIADRSVAALADFVCGANDAGYHLTGVNWGRDLPEPALVADIRNVVAGDPSPDGKGPLELCRGIEVGHIFQLRTKYSEAMKAVFLDEKGESRPMEMGCYGIGITRIVAAAIEQGHDARGAIFPAPIAPFEACVVPIGYHKSAEVRAAADKLYADLLAAGVDALLDDRDERPGSMFADMELVGIPHRLVVSDKGIAAGTVEYKGRRDEKPSMLPQGEAVATVRAKL 732
            H+ C PGYIGPVG  +G+RVIADR+VA +ADF+CGAN+ G+HL G N+GRDLPEP LVADIRNVV GDP PDG+G L++CRGIEVGHIFQLRTKYSEAMKAVFLDE G+SR  EMGCYGIG+TRIV AAIEQ HDARG +FP PIAPF+  +VPIGY+KS +VR   DKLY +L AAG++ L DDRDERPG MF+DMEL+GIPHR+VVS++G+  G +EY+GRRD+  + +   E +A VRA+L
Sbjct:    1 HLGCKPGYIGPVGADAGIRVIADRAVAVMADFICGANEEGFHLAGANFGRDLPEPVLVADIRNVVPGDPCPDGRGKLDICRGIEVGHIFQLRTKYSEAMKAVFLDESGKSRAYEMGCYGIGVTRIVGAAIEQNHDARGIVFPQPIAPFQLALVPIGYNKSTQVRETCDKLYLELAAAGIEVLFDDRDERPGVMFSDMELIGIPHRVVVSERGLKQGKLEYQGRRDQTSTPVAMNELIAFVRARL 244
[Close]
BLAST of mRNA_P-wetherbeei_contig13756.1.1 vs. uniprot
Match: A0A537AJ26_9PROT (Proline--tRNA ligase n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A537AJ26_9PROT)

HSP 1 Score: 372 bits (954), Expect = 9.510e-124
Identity = 177/244 (72.54%), Postives = 203/244 (83.20%), Query Frame = 1 
Query:    1 AHMHCVPGYIGPVGTSGLRVIADRSVAALADFVCGANDAGYHLTGVNWGRDLPEPALVADIRNVVAGDPSPDGKGPLELCRGIEVGHIFQLRTKYSEAMKAVFLDEKGESRPMEMGCYGIGITRIVAAAIEQGHDARGAIFPAPIAPFEACVVPIGYHKSAEVRAAADKLYADLLAAGVDALLDDRDERPGSMFADMELVGIPHRLVVSDKGIAAGTVEYKGRRDEKPSMLPQGEAVATVRAKL 732
            AH+HC PGYIGPVG    ++IADR+VAA+ADFVCGAN+ GYHLTGVNW RDL EP  VAD+RNV+AGDPSPDGKG LE+ RGIEVGHIFQLRTKYSEAM A FLDEKG +RP EMGCYGIG+TRIVAAAIEQ HD RG IFPAPIAPF  C+VPIG HKSA VR AA++LY +L  AG+D LLDDR+ERPG +FADM+LVGIPHR+V+ ++G+AAG  EYK RRDEKP  +P G  V  +R KL
Sbjct:  321 AHLHCAPGYIGPVGAKA-KMIADRTVAAMADFVCGANEEGYHLTGVNWVRDLAEPR-VADLRNVLAGDPSPDGKGQLEIVRGIEVGHIFQLRTKYSEAMGATFLDEKGATRPFEMGCYGIGVTRIVAAAIEQNHDPRGIIFPAPIAPFAVCIVPIGLHKSAAVREAAERLYGELTTAGIDVLLDDREERPGVLFADMDLVGIPHRVVLGERGLAAGNAEYKARRDEKPVDVPLGGIVPLLRKKL 562
[Close]
BLAST of mRNA_P-wetherbeei_contig13756.1.1 vs. uniprot
Match: A0A3D6DVD4_9PROT (Proline--tRNA ligase n=1 Tax=Candidatus Accumulibacter sp. TaxID=2053492 RepID=A0A3D6DVD4_9PROT)

HSP 1 Score: 366 bits (940), Expect = 1.760e-121
Identity = 174/244 (71.31%), Postives = 202/244 (82.79%), Query Frame = 1 
Query:    1 AHMHCVPGYIGPVGTSGLRVIADRSVAALADFVCGANDAGYHLTGVNWGRDLPEPALVADIRNVVAGDPSPDGKGPLELCRGIEVGHIFQLRTKYSEAMKAVFLDEKGESRPMEMGCYGIGITRIVAAAIEQGHDARGAIFPAPIAPFEACVVPIGYHKSAEVRAAADKLYADLLAAGVDALLDDRDERPGSMFADMELVGIPHRLVVSDKGIAAGTVEYKGRRDEKPSMLPQGEAVATVRAKL 732
            A + C PGYIGPV    +RV+ADRSVA + DFVCGANDAG+HLTGVN+GRDL EPALVAD+RNVVAGDPSPDGKG LELCRGIEVGHIFQLRTKY+EA+K  FLDE G+SR MEMGCYGIG+TRIV AAIEQGHD RG  FPA IAPFE  +VP+GY KSA V+AA+D LYA+L  AG+D LLDDR+ERPG MFA+MEL+GIPHR+VV ++G+A G +EYKGR D +  MLP GE    + A+L
Sbjct:  328 AALGCQPGYIGPVAVGDVRVVADRSVAVMGDFVCGANDAGFHLTGVNFGRDLAEPALVADLRNVVAGDPSPDGKGRLELCRGIEVGHIFQLRTKYAEALKCSFLDESGQSRIMEMGCYGIGVTRIVGAAIEQGHDQRGISFPAAIAPFEVSIVPMGYAKSAAVKAASDALYAELTTAGIDVLLDDRNERPGVMFAEMELIGIPHRVVVGERGLAEGKLEYKGRADAESQMLPLGELGQFLAARL 571
[Close]
BLAST of mRNA_P-wetherbeei_contig13756.1.1 vs. uniprot
Match: A0A536WR70_9PROT (Proline--tRNA ligase n=2 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536WR70_9PROT)

HSP 1 Score: 365 bits (937), Expect = 3.500e-121
Identity = 174/244 (71.31%), Postives = 201/244 (82.38%), Query Frame = 1 
Query:    4 HMHCVPGYIGPVGTSGLRVIADRSVAALADFVCGANDAGYHLTGVNWGRDLPEPALVADIRNVVAGDPSPDGKGPLELCRGIEVGHIFQLRTKYSEAMKAVFLDEKGESRPMEMGCYGIGITRIVAAAIEQGHDARGAIFPAPIAPFEACVVPIGYHKSAEVRAAADKLYADLLAAGVDALLDDRDERPGSMFADMELVGIPHRLVVSDKGIAAGTVEYKGRRDEKPSMLPQGEAVATVRAKLA 735
            H+HC  GYIGPVG   +RV+ADR+VAA+ADFVCGAN  GYHL GVNWGRD  EP  V DIRNVVAGDPSPDGKG L++ RGIEVGHIFQLRTKYSEAM A FLDEKG +RP EMGCYGIG+TRIV AAIEQ HDARG IFPA IAPF AC+VPIGYHKS  VR AA+++YA+L AAG+D LL+DR+ERPG +FADM+L+GIPHR+VV ++G+AAG  EYK RRD+K S +P   A A +  KLA
Sbjct:  322 HLHCPAGYIGPVGAK-VRVVADRTVAAMADFVCGANQEGYHLAGVNWGRDASEPE-VGDIRNVVAGDPSPDGKGKLDIVRGIEVGHIFQLRTKYSEAMGATFLDEKGAARPFEMGCYGIGVTRIVGAAIEQNHDARGIIFPAAIAPFSACIVPIGYHKSTAVREAAERVYAELGAAGIDVLLEDREERPGVLFADMDLIGIPHRIVVGERGLAAGNAEYKARRDDKGSDVPLASAAALLLKKLA 563
[Close]
BLAST of mRNA_P-wetherbeei_contig13756.1.1 vs. uniprot
Match: UPI00193BCCEF (proline--tRNA ligase n=1 Tax=Azospira restricta TaxID=404405 RepID=UPI00193BCCEF)

HSP 1 Score: 363 bits (932), Expect = 2.510e-120
Identity = 170/242 (70.25%), Postives = 203/242 (83.88%), Query Frame = 1 
Query:   13 CVPGYIGPVGTSG--LRVIADRSVAALADFVCGANDAGYHLTGVNWGRDLPEPALVADIRNVVAGDPSPDGKGPLELCRGIEVGHIFQLRTKYSEAMKAVFLDEKGESRPMEMGCYGIGITRIVAAAIEQGHDARGAIFPAPIAPFEACVVPIGYHKSAEVRAAADKLYADLLAAGVDALLDDRDERPGSMFADMELVGIPHRLVVSDKGIAAGTVEYKGRRDEKPSMLPQGEAVATVRAKL 732
            C PGYIGPVG     +RVIADR+VAA+ +FVCGAN  G+HLTGVNWGR+LPEP+LVADIRNVVAGDPSPDGKG LELCRGIEVGHIFQLRTKYS AM   FLDE G+ + MEMGCYGIG++RIV AAIEQGHDARG +FPA IAPFEAC+VP+GY KS  V+AAADKLY +L AAG+D +LDDR+ERPG MFADMEL+G+PHR+VV ++G+A G +EYKGR + +  M+  G+ +A ++ KL
Sbjct:  328 CKPGYIGPVGVDAAKVRVIADRTVAAMDNFVCGANTEGFHLTGVNWGRNLPEPSLVADIRNVVAGDPSPDGKGALELCRGIEVGHIFQLRTKYSAAMGCTFLDETGKEQVMEMGCYGIGVSRIVGAAIEQGHDARGIVFPAAIAPFEACIVPMGYAKSEAVKAAADKLYGELRAAGIDVVLDDRNERPGVMFADMELIGVPHRIVVGERGLAEGKLEYKGRTETEAQMIAAGDMLAFLKEKL 569
[Close]
BLAST of mRNA_P-wetherbeei_contig13756.1.1 vs. uniprot
Match: A0A1F4EZF9_9PROT (Proline--tRNA ligase n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_65_14 TaxID=1797501 RepID=A0A1F4EZF9_9PROT)

HSP 1 Score: 363 bits (931), Expect = 3.250e-120
Identity = 176/248 (70.97%), Postives = 211/248 (85.08%), Query Frame = 1 
Query:    1 AHMHCVPGYIGP-VGTSG-----LRVIADRSVAALADFVCGANDAGYHLTGVNWGRDLPEPALVADIRNVVAGDPSPDGKGPLELCRGIEVGHIFQLRTKYSEAMKAVFLDEKGESRPMEMGCYGIGITRIVAAAIEQGHDARGAIFPAPIAPFEACVVPIGYHKSAEVRAAADKLYADLLAAGVDALLDDRDERPGSMFADMELVGIPHRLVVSDKGIAAGTVEYKGRRDEKPSMLPQGEAVATVRA 726
            A + C  GYIGP +G SG     ++VIADR+VAA++DFVCGAN+ G+HLTGVNW RDL EP  VAD+RNVVAGDPSPDGKG LEL RG+EVGHIFQLRTKYSEA+KA FLDEKGE+R MEMGCYGIG+TR+VAAA+EQ HD RG +FPAP+APF AC+VPIGY KSA VR AAD+L+A+L AAGV+ LLDDRDERPG +FADM+L+GIPHR+V+S++G+AAG+ EYKGRRDEKP  LP  E VA +++
Sbjct:  321 AALGCKAGYIGPPLGGSGPSGAKVKVIADRTVAAMSDFVCGANEEGFHLTGVNWIRDLAEPQ-VADVRNVVAGDPSPDGKGTLELARGVEVGHIFQLRTKYSEALKAQFLDEKGETRAMEMGCYGIGVTRVVAAAVEQNHDERGIVFPAPMAPFHACLVPIGYRKSAAVREAADRLHAELQAAGVEVLLDDRDERPGVLFADMDLIGIPHRVVLSERGLAAGSAEYKGRRDEKPRDLPLKEVVAYLKS 567
[Close]
BLAST of mRNA_P-wetherbeei_contig13756.1.1 vs. uniprot
Match: A0A1Q3VQK8_9PROT (Proline--tRNA ligase n=1 Tax=Candidatus Accumulibacter sp. 66-26 TaxID=1895689 RepID=A0A1Q3VQK8_9PROT)

HSP 1 Score: 362 bits (929), Expect = 7.770e-120
Identity = 169/247 (68.42%), Postives = 202/247 (81.78%), Query Frame = 1 
Query:    1 AHMHCVPGYIGPVGTSGLRVIADRSVAALADFVCGANDAGYHLTGVNWGRDLPEPALVADIRNVVAGDPSPDGKGPLELCRGIEVGHIFQLRTKYSEAMKAVFLDEKGESRPMEMGCYGIGITRIVAAAIEQGHDARGAIFPAPIAPFEACVVPIGYHKSAEVRAAADKLYADLLAAGVDALLDDRDERPGSMFADMELVGIPHRLVVSDKGIAAGTVEYKGRRDEKPSMLPQGEAVATVRAKLAPA 741
            A + C PGYIGPVG   + V ADR+VA L+DF+CGAN+AG+HL GVN+GRDLPEPA VAD+RNV+AGDPSPDGKG LELCRGIEVGHIFQLRTKY+ AMK  FLDE G+ + MEMGCYGIG++RIV AAIEQ HD RG +FPA IAPFEAC+VP+GY KS  V+AAAD LYA+L AAG+D LLDDR+ERPG MFADMEL+GIPHR+VV ++G+A G +EYKGR D +  M+  GE  A ++ +L  A
Sbjct:  328 AALGCKPGYIGPVGAGAIPVFADRAVAVLSDFICGANEAGFHLGGVNFGRDLPEPAAVADLRNVIAGDPSPDGKGVLELCRGIEVGHIFQLRTKYAAAMKCTFLDEGGKEQVMEMGCYGIGVSRIVGAAIEQNHDERGIVFPAAIAPFEACIVPMGYAKSEAVKAAADALYAELKAAGIDVLLDDRNERPGVMFADMELIGIPHRVVVGERGLAEGKLEYKGRSDSEAHMVAAGEIAALLKERLCAA 574
[Close]
BLAST of mRNA_P-wetherbeei_contig13756.1.1 vs. uniprot
Match: A0A1F3YBM5_9PROT (Proline--tRNA ligase n=1 Tax=Betaproteobacteria bacterium RBG_16_66_20 TaxID=1797479 RepID=A0A1F3YBM5_9PROT)

HSP 1 Score: 362 bits (928), Expect = 1.200e-119
Identity = 170/245 (69.39%), Postives = 204/245 (83.27%), Query Frame = 1 
Query:   13 CVPGYIGPVGTSGLRVIADRSVAALADFVCGANDAGYHLTGVNWGRDLPE--PALVADIRNVVAGDPSPDGKGPLELCRGIEVGHIFQLRTKYSEAMKAVFLDEKGESRPMEMGCYGIGITRIVAAAIEQGHDARGAIFPAPIAPFEACVVPIGYHKSAEVRAAADKLYADLLAAGVDALLDDRDERPGSMFADMELVGIPHRLVVSDKGIAAGTVEYKGRRDEKPSMLPQGEAVATVRAKLAPA 741
            C PGYIGPV      +  DR+VAA++DFVCGAN+ GYHLTGVNWGRDL E  P  + DIRNV  GDPSPDGKG L++ RGIEVGHIFQLRTKYSEA+ AVFLD+KG +RPMEMGCYGIGITRI AAAIEQ HD RG +FP PIAPFEAC+VPIG+HK+A VRAAA+KLYA+L+AAG+D LL+DRDERPG +FADM+L+GIPHRLV+S++G+AAGT+EYKGR +  P  +P G+A+  +R +  PA
Sbjct:  333 CRPGYIGPVSGRMFTLYCDRTVAAMSDFVCGANEEGYHLTGVNWGRDLAELQPDFIVDIRNVREGDPSPDGKGRLKIQRGIEVGHIFQLRTKYSEALNAVFLDDKGAARPMEMGCYGIGITRIAAAAIEQHHDERGIVFPRPIAPFEACLVPIGFHKNAAVRAAAEKLYAELVAAGIDLLLEDRDERPGVLFADMDLLGIPHRLVISERGLAAGTIEYKGRTEATPHDVPLGDALRFLRDRFTPA 577
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13756.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5C7K0K6_9RHOO1.340e-12670.73Proline--tRNA ligase (Fragment) n=1 Tax=Rhodocycla... [more]
A0A521YJ59_9PROT4.450e-12673.03Proline--tRNA ligase (Fragment) n=1 Tax=Betaproteo... [more]
A0A521XD23_9PROT1.620e-12568.85Proline--tRNA ligase (Fragment) n=1 Tax=Betaproteo... [more]
A0A537AJ26_9PROT9.510e-12472.54Proline--tRNA ligase n=1 Tax=Betaproteobacteria ba... [more]
A0A3D6DVD4_9PROT1.760e-12171.31Proline--tRNA ligase n=1 Tax=Candidatus Accumuliba... [more]
A0A536WR70_9PROT3.500e-12171.31Proline--tRNA ligase n=2 Tax=Betaproteobacteria ba... [more]
UPI00193BCCEF2.510e-12070.25proline--tRNA ligase n=1 Tax=Azospira restricta Ta... [more]
A0A1F4EZF9_9PROT3.250e-12070.97Proline--tRNA ligase n=1 Tax=Betaproteobacteria ba... [more]
A0A1Q3VQK8_9PROT7.770e-12068.42Proline--tRNA ligase n=1 Tax=Candidatus Accumuliba... [more]
A0A1F3YBM5_9PROT1.200e-11969.39Proline--tRNA ligase n=1 Tax=Betaproteobacteria ba... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13756contigP-wetherbeei_contig13756:4..747 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1454004.AW11_03996
Preferred nameproS
PFAMsHGTP_anticodon,tRNA-synt_2b,tRNA_edit
Model size744
Max annot lvl28216|Betaproteobacteria
KEGG rclassRC00055,RC00523
KEGG koko:K01881
KEGG ReactionR03661
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.38e-119
EggNOG OGsCOG0442@1|root,COG0442@2|Bacteria,1MU7E@1224|Proteobacteria,2VGZ9@28216|Betaproteobacteria,1KPQK@119066|unclassified Betaproteobacteria
EC6.1.1.15
DescriptionCatalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Ala-tRNA(Pro). The misacylated Cys- tRNA(Pro) is not edited by ProRS
Cds size738
COG categoryJ
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185996.3478317-UTR-P-wetherbeei_contig13756:3..91683185996.3478317-UTR-P-wetherbeei_contig13756:3..9Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig13756 4..9 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185996.3567758-CDS-P-wetherbeei_contig13756:9..7471683185996.3567758-CDS-P-wetherbeei_contig13756:9..747Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13756 10..747 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13756.1.1prot_P-wetherbeei_contig13756.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13756 10..747 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13756.1.1

>prot_P-wetherbeei_contig13756.1.1 ID=prot_P-wetherbeei_contig13756.1.1|Name=mRNA_P-wetherbeei_contig13756.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=246bp
MHCVPGYIGPVGTSGLRVIADRSVAALADFVCGANDAGYHLTGVNWGRDL
PEPALVADIRNVVAGDPSPDGKGPLELCRGIEVGHIFQLRTKYSEAMKAV
FLDEKGESRPMEMGCYGIGITRIVAAAIEQGHDARGAIFPAPIAPFEACV
VPIGYHKSAEVRAAADKLYADLLAAGVDALLDDRDERPGSMFADMELVGI
PHRLVVSDKGIAAGTVEYKGRRDEKPSMLPQGEAVATVRAKLAPA*
back to top

mRNA from alignment at P-wetherbeei_contig13756:4..747+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13756.1.1 ID=mRNA_P-wetherbeei_contig13756.1.1|Name=mRNA_P-wetherbeei_contig13756.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=744bp|location=Sequence derived from alignment at P-wetherbeei_contig13756:4..747+ (Phaeothamnion wetherbeei SAG_119_79)
GCGCACATGCACTGCGTGCCGGGCTACATCGGCCCGGTCGGCACGAGCGG
CTTGCGCGTGATCGCGGACCGGTCGGTGGCCGCGCTGGCCGACTTCGTCT
GCGGCGCCAACGACGCCGGCTACCACCTGACCGGCGTGAACTGGGGGCGC
GACCTGCCCGAACCCGCCCTGGTGGCCGACATCCGCAACGTCGTCGCCGG
CGACCCGAGCCCGGACGGCAAGGGCCCGCTGGAACTCTGCCGCGGCATCG
AGGTCGGACACATATTCCAGTTGCGCACCAAGTATTCCGAGGCGATGAAA
GCGGTGTTCCTCGACGAGAAAGGCGAATCGCGACCGATGGAGATGGGCTG
CTACGGCATCGGCATCACGCGCATCGTGGCGGCCGCCATCGAGCAGGGGC
ACGACGCGCGCGGCGCGATCTTCCCGGCCCCCATCGCGCCCTTCGAGGCC
TGCGTGGTGCCGATCGGCTACCACAAGAGCGCCGAGGTCAGGGCCGCGGC
CGACAAGCTCTACGCCGACCTGCTCGCGGCGGGCGTCGACGCGCTGCTCG
ACGACCGCGACGAGCGCCCGGGCTCCATGTTCGCCGACATGGAACTGGTC
GGCATCCCGCACCGGCTGGTCGTATCGGACAAGGGCATCGCCGCGGGCAC
CGTGGAGTACAAGGGCCGGCGCGACGAGAAGCCCTCCATGCTGCCGCAGG
GGGAGGCGGTGGCGACGGTCCGAGCGAAGCTCGCCCCTGCGTGA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig13756:4..747+

>mRNA_P-wetherbeei_contig13756.1.1 ID=mRNA_P-wetherbeei_contig13756.1.1|Name=mRNA_P-wetherbeei_contig13756.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=738bp|location=Sequence derived from alignment at P-wetherbeei_contig13756:4..747+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCACTGCGTGCCGGGCTACATCGGCCCGGTCGGCACGAGCGGCTTGCG
CGTGATCGCGGACCGGTCGGTGGCCGCGCTGGCCGACTTCGTCTGCGGCG
CCAACGACGCCGGCTACCACCTGACCGGCGTGAACTGGGGGCGCGACCTG
CCCGAACCCGCCCTGGTGGCCGACATCCGCAACGTCGTCGCCGGCGACCC
GAGCCCGGACGGCAAGGGCCCGCTGGAACTCTGCCGCGGCATCGAGGTCG
GACACATATTCCAGTTGCGCACCAAGTATTCCGAGGCGATGAAAGCGGTG
TTCCTCGACGAGAAAGGCGAATCGCGACCGATGGAGATGGGCTGCTACGG
CATCGGCATCACGCGCATCGTGGCGGCCGCCATCGAGCAGGGGCACGACG
CGCGCGGCGCGATCTTCCCGGCCCCCATCGCGCCCTTCGAGGCCTGCGTG
GTGCCGATCGGCTACCACAAGAGCGCCGAGGTCAGGGCCGCGGCCGACAA
GCTCTACGCCGACCTGCTCGCGGCGGGCGTCGACGCGCTGCTCGACGACC
GCGACGAGCGCCCGGGCTCCATGTTCGCCGACATGGAACTGGTCGGCATC
CCGCACCGGCTGGTCGTATCGGACAAGGGCATCGCCGCGGGCACCGTGGA
GTACAAGGGCCGGCGCGACGAGAAGCCCTCCATGCTGCCGCAGGGGGAGG
CGGTGGCGACGGTCCGAGCGAAGCTCGCCCCTGCGTGA
back to top