mRNA_P-wetherbeei_contig13751.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13751.1.1
Unique NamemRNA_P-wetherbeei_contig13751.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig13751.1.1 vs. uniprot
Match: A0A7X8XNR8_9BURK (Zinc ribbon domain-containing protein n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A7X8XNR8_9BURK)

HSP 1 Score: 164 bits (414), Expect = 1.320e-48
Identity = 78/169 (46.15%), Postives = 118/169 (69.82%), Query Frame = 1 
Query:    4 IICVRCGQQNGDGLNRCEQCGSQLPRISGGTSREPEPEY--VNERVRELQEAAHKALAGEWSPEQLGDYLDDILRGIAEREEHIRSIEIPPEALEDFRLELENGFRGIHLFYEGVSTMVQYADNPDPGFLEDGLEMVRQGNDFLNEAMRINKQQRAKFEELYLDSSNMM 504
            ++CV+CG QN  G   C +C +QLPR+  G   E EP+   V +R+++++ AA +A +GEW+PE+ G +L++    +AE+E+ IR I IP EA+EDFR ELE G+ GI L+ +GV  M  +    +P  LE+GLE+VRQGN+F+N+AMRIN++ R K EE+  D+S++M
Sbjct:    1 MLCVKCGFQNSGGAKYCSKCNAQLPRVLHGPQEEVEPDTPRVQDRLQQIEAAAARAASGEWNPEEFGRFLEETAVILAEKEQAIRDIPIPDEAVEDFREELEVGYMGIDLYTQGVQRMFDFVAETNPLILEEGLELVRQGNEFVNQAMRINRENRRKLEEMSTDASSLM 169
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BLAST of mRNA_P-wetherbeei_contig13751.1.1 vs. uniprot
Match: A0A355TSY7_9BACT (Uncharacterized protein n=1 Tax=bacterium UBP9_UBA11836 TaxID=2060920 RepID=A0A355TSY7_9BACT)

HSP 1 Score: 142 bits (359), Expect = 2.830e-40
Identity = 69/162 (42.59%), Postives = 104/162 (64.20%), Query Frame = 1 
Query:    4 IICVRCGQQNGDGLNRCEQCGSQLPRISGGTSREPEPEY----VNERVRELQEAAHKALAGEWSPEQLGDYLDDILRGIAEREEHIRSIEIPPEALEDFRLELENGFRGIHLFYEGVSTMVQYADNPDPGFLEDGLEMVRQGNDFLNEAMRINKQQRAKFEE 477
            + CV+CG  N      C +CG+ LPR       + EP+     VNER++  ++A  K  +GEW+ E+  ++L++    +AE+E+ IRSI+IP EA  DF+ EL+ GF GI L+ +G+     + +N DP  LE+GLE+VRQGN+ +NEAMRIN++ R+K EE
Sbjct:    1 MFCVKCGFDNESEAKICRKCGATLPRYVSEAETQEEPKVESPVVNERLQIFEQAVEKVSSGEWNIEEFANFLEETAAILAEKEQGIRSIDIPEEAAADFKDELDVGFEGIKLYNQGMQVFFAFVENEDPALLEEGLELVRQGNERINEAMRINRENRSKLEE 162
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BLAST of mRNA_P-wetherbeei_contig13751.1.1 vs. uniprot
Match: A0A7Z9PVJ1_9BACT (Uncharacterized protein n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7Z9PVJ1_9BACT)

HSP 1 Score: 131 bits (329), Expect = 6.080e-36
Identity = 62/131 (47.33%), Postives = 88/131 (67.18%), Query Frame = 1 
Query:  109 EPEYVNERVRELQEAAHKALAGEWSPEQLGDYLDDILRGIAEREEHIRSIEIPPEALEDFRLELENGFRGIHLFYEGVSTMVQYADNPDPGFLEDGLEMVRQGNDFLNEAMRINKQQRAKFEELYLDSSNM 501
            +PE ++  + E+++A  K ++GEW  +Q  DY+D +   + ERE  IR IEIPPEA+ED R ELE GF GI  + +GV+ + Q+ D P+   LE+GLE+ RQGND LNEAMRIN+    + E +Y +SS M
Sbjct:   22 QPEMIDRHLIEVEDACQKVVSGEWDGDQFADYIDQLAEKLQERENFIRQIEIPPEAIEDMREELEVGFSGIAHWNDGVARIAQFLDEPEIAHLEEGLELCRQGNDLLNEAMRINRDNYKRVETMYRESSTM 152
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BLAST of mRNA_P-wetherbeei_contig13751.1.1 vs. uniprot
Match: A0A7X8XKG6_9BURK (Uncharacterized protein n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A7X8XKG6_9BURK)

HSP 1 Score: 58.5 bits (140), Expect = 6.640e-8
Identity = 32/117 (27.35%), Postives = 65/117 (55.56%), Query Frame = 1 
Query:  130 RVRELQEAAHKALAGEWSPEQLGDYLDDILRGIAEREEHIRSIEIPPEALEDFRL-ELENGFRGIHLFYEGVSTMVQYADNPDPGFLEDGLEMVRQGNDFLNEAMRINKQQRAKFEE 477
            R ++ ++A  +  AG+W+ +   ++L +I   +AE+      + I     E++   E+  G  G+  +  G+  M  + ++ +   L+ GL+++ QGN+ LN+AMRIN+ +R K E+
Sbjct:   15 RFQQFKDAVERVKAGQWASDDFLEFLQNIYTLLAEKRMSAEQL-IQESGYEEYAEDEVHQGRDGMDHYELGMQEMSLFLEDGELAHLDQGLDLIWQGNERLNDAMRINRAERKKLED 130
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13751.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A7X8XNR8_9BURK1.320e-4846.15Zinc ribbon domain-containing protein n=1 Tax=Burk... [more]
A0A355TSY7_9BACT2.830e-4042.59Uncharacterized protein n=1 Tax=bacterium UBP9_UBA... [more]
A0A7Z9PVJ1_9BACT6.080e-3647.33Uncharacterized protein n=1 Tax=Phycisphaerales ba... [more]
A0A7X8XKG6_9BURK6.640e-827.35Uncharacterized protein n=1 Tax=Burkholderiales ba... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13751contigP-wetherbeei_contig13751:334..840 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size507
Hectar predicted targeting categoryother localisation
Exons1
Cds size507
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185996.2100513-CDS-P-wetherbeei_contig13751:333..8401683185996.2100513-CDS-P-wetherbeei_contig13751:333..840Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13751 334..840 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13751.1.1prot_P-wetherbeei_contig13751.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13751 334..840 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13751.1.1

>prot_P-wetherbeei_contig13751.1.1 ID=prot_P-wetherbeei_contig13751.1.1|Name=mRNA_P-wetherbeei_contig13751.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=169bp
VIICVRCGQQNGDGLNRCEQCGSQLPRISGGTSREPEPEYVNERVRELQE
AAHKALAGEWSPEQLGDYLDDILRGIAEREEHIRSIEIPPEALEDFRLEL
ENGFRGIHLFYEGVSTMVQYADNPDPGFLEDGLEMVRQGNDFLNEAMRIN
KQQRAKFEELYLDSSNMM*
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mRNA from alignment at P-wetherbeei_contig13751:334..840+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13751.1.1 ID=mRNA_P-wetherbeei_contig13751.1.1|Name=mRNA_P-wetherbeei_contig13751.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=507bp|location=Sequence derived from alignment at P-wetherbeei_contig13751:334..840+ (Phaeothamnion wetherbeei SAG_119_79)
GTGATCATTTGCGTCAGATGCGGCCAGCAAAATGGCGACGGTCTCAATCG
CTGCGAACAGTGCGGTTCCCAACTCCCCCGCATTTCCGGCGGAACGTCGC
GAGAGCCCGAGCCGGAGTACGTCAACGAGCGCGTACGCGAGCTCCAGGAA
GCCGCTCATAAAGCTTTGGCAGGGGAATGGTCCCCCGAACAGCTCGGCGA
TTACCTGGACGATATTTTGCGCGGCATCGCGGAGCGAGAAGAGCATATCC
GCTCGATCGAAATCCCCCCCGAGGCTCTGGAAGACTTCCGTCTCGAGCTG
GAAAACGGCTTTCGCGGCATCCATCTATTCTACGAAGGCGTTTCCACAAT
GGTCCAATACGCCGACAATCCCGATCCTGGCTTTCTCGAAGACGGCCTGG
AGATGGTTCGCCAGGGCAATGACTTCCTCAACGAAGCCATGCGCATCAAC
AAGCAGCAACGCGCCAAGTTTGAAGAGCTCTATCTCGACTCATCCAATAT
GATGTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13751:334..840+

>mRNA_P-wetherbeei_contig13751.1.1 ID=mRNA_P-wetherbeei_contig13751.1.1|Name=mRNA_P-wetherbeei_contig13751.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=507bp|location=Sequence derived from alignment at P-wetherbeei_contig13751:334..840+ (Phaeothamnion wetherbeei SAG_119_79)
GTGATCATTTGCGTCAGATGCGGCCAGCAAAATGGCGACGGTCTCAATCG
CTGCGAACAGTGCGGTTCCCAACTCCCCCGCATTTCCGGCGGAACGTCGC
GAGAGCCCGAGCCGGAGTACGTCAACGAGCGCGTACGCGAGCTCCAGGAA
GCCGCTCATAAAGCTTTGGCAGGGGAATGGTCCCCCGAACAGCTCGGCGA
TTACCTGGACGATATTTTGCGCGGCATCGCGGAGCGAGAAGAGCATATCC
GCTCGATCGAAATCCCCCCCGAGGCTCTGGAAGACTTCCGTCTCGAGCTG
GAAAACGGCTTTCGCGGCATCCATCTATTCTACGAAGGCGTTTCCACAAT
GGTCCAATACGCCGACAATCCCGATCCTGGCTTTCTCGAAGACGGCCTGG
AGATGGTTCGCCAGGGCAATGACTTCCTCAACGAAGCCATGCGCATCAAC
AAGCAGCAACGCGCCAAGTTTGAAGAGCTCTATCTCGACTCATCCAATAT
GATGTAG
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