mRNA_P-wetherbeei_contig13734.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13734.1.1
Unique NamemRNA_P-wetherbeei_contig13734.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig13734.1.1 vs. uniprot
Match: D8LRD8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRD8_ECTSI)

HSP 1 Score: 252 bits (643), Expect = 3.880e-74
Identity = 145/269 (53.90%), Postives = 184/269 (68.40%), Query Frame = 1 
Query:    4 ARKALVEGAMSVGSLIVRD-AAADSYAASARGYLKEVFDQPSAEAAAAFLCLAFYNMYAGESARADLYLVHAHSFCLNLEEFPLNLELCIEHLSHARLHVELRPNFRQWREGHYRVLHVVSHVLSTLKQASFWAIGLASALGIGGRALGRRGDGALRTCVAELIECMRISVHEAVARLICSSLAALLLVMLGQRPQAAAVAESITGLVETTPVVVQVMPLCWSAATAAGGLLFVLERHEAHARLHTVLA--RYANATAATACPCGLPSP 801
            AR +L+E A+SVG+L+ RD  AA  +A +AR  LKE+FD PS EAA+AFLCLA++N Y+GE+ RADLYLV AHSFCLNL EFPLNLE+CIEHLSH RL +ELRPNF  W    YRVLHV +HVLS L Q      GL +AL  G       G+ AL  CV EL+ C+RIS  + +ARLICSSL  LLL++LG+R ++ AVAES+   V  TP + +VMPL W A T    LLF+ ERH  ++RL+ ++A  +  + +A     C LP P
Sbjct:  335 ARSSLIEAALSVGALVTRDRVAAVGFAENARQLLKEIFDVPSEEAASAFLCLAYFNTYSGEALRADLYLVQAHSFCLNLPEFPLNLEICIEHLSHGRLKIELRPNFHTWGNRRYRVLHVANHVLSMLTQTG--DRGLPAALQAGDPLAFEGGEAALLRCVEELVTCIRISERDTLARLICSSLVGLLLMLLGRREESIAVAESVAEGVTPTPAITRVMPLSWIATTVTSALLFIYERHGVYSRLYELVAPAQRLSGSAGQERECALPLP 601
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BLAST of mRNA_P-wetherbeei_contig13734.1.1 vs. uniprot
Match: A0A6H5J936_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J936_9PHAE)

HSP 1 Score: 252 bits (643), Expect = 3.790e-73
Identity = 140/249 (56.22%), Postives = 177/249 (71.08%), Query Frame = 1 
Query:    4 ARKALVEGAMSVGSLIVRD-AAADSYAASARGYLKEVFDQPSAEAAAAFLCLAFYNMYAGESARADLYLVHAHSFCLNLEEFPLNLELCIEHLSHARLHVELRPNFRQWREGHYRVLHVVSHVLSTLKQASFWAIGLASALGIGGRALGRRGDGALRTCVAELIECMRISVHEAVARLICSSLAALLLVMLGQRPQAAAVAESITGLVETTPVVVQVMPLCWSAATAAGGLLFVLERHEAHARLHTVLA 747
            AR +L+E A+SVG+L+ RD  AA  +A +AR  LKE+FD PS EAA+AFLCLA++N Y+GE+ RADLYLV AHSFCLNL EFPLNLE+CIEHLSH RL +ELRPNF  W    YRVLHV +HVLS L Q      GL +AL  G       G+ AL  CV EL+ C+RIS  + +ARLICSSL  LLL++LG+R ++ AVAES+   V  TP + +VMPL W+A T    LLF+ ERH  ++RL+ ++A
Sbjct:  532 ARSSLIEAALSVGALVTRDQVAAVRFAENARQLLKEIFDVPSEEAASAFLCLAYFNTYSGEALRADLYLVQAHSFCLNLPEFPLNLEICIEHLSHGRLKIELRPNFHTWGNRRYRVLHVANHVLSMLTQTG--DRGLPAALQAGDPHAFEGGEAALLRCVEELVTCIRISERDTLARLICSSLVGLLLMLLGRREESIAVAESVAEGVTPTPAITRVMPLSWTATTVTSALLFIYERHGVYSRLYELVA 778
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BLAST of mRNA_P-wetherbeei_contig13734.1.1 vs. uniprot
Match: D8LIG0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIG0_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 2.020e-13
Identity = 80/250 (32.00%), Postives = 117/250 (46.80%), Query Frame = 1 
Query:   10 KALVEGAMSVGSLIVRDA-AADSYAASARGYLKEVFDQPSAEAAAAFLCLAFYNMYAGESARADLYLVHAHSFCLNLEEFPLNLELCIEHLSHARLHVELRPNFRQWREGHYRVLHVVSHVLSTLKQASFWAIGLASALGIGGRALGRRGDGALRTCVAELIECMRISVHEAVARLICSSLAALLLVMLGQRPQAAAVAESITGLVET----TPVVVQVMPLCWSAATAAGGLLFVLERHEAHARLHTVL 744
            +A V GA+S+G+LI  D  AA +Y  S R +L +V          +   +A Y  + GE      ++ HA     N++  P NL L IE+L +AR     RP        H R LH +S +L+ +      A+G A+A+G             L  C+  L    R      +  L+C+SL ALLL MLGQR  A  V ++I  LV+      P VV+ +PL W A   A  L F+L +   + RL + +
Sbjct:  169 QAQVVGAISLGALISGDQEAAHAYYLSLRYHLGDVNGLTGVGVVPSLALVALYWQHRGEDELKIEWVGHARRVLANVQSIPANLVLSIEYLDYAR-EAHPRPGVELMPSSH-RALHSISCLLANMPAIVNPAVGRAAAIG---------SCEELSICILGL----RNETSVELTLLLCTSLRALLLAMLGQRDAATDVLDTIPSLVDVGSGGNPSVVRALPLSWDALLIASALSFLLGQGATYQRLRSAV 403
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13734.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LRD8_ECTSI3.880e-7453.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J936_9PHAE3.790e-7356.22Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
D8LIG0_ECTSI2.020e-1332.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13734contigP-wetherbeei_contig13734:4..1616 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size801
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-06_002910.1
Cds size801
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185995.7519953-CDS-P-wetherbeei_contig13734:3..3961683185995.7519953-CDS-P-wetherbeei_contig13734:3..396Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13734 4..396 -
1683185995.7628255-CDS-P-wetherbeei_contig13734:851..10591683185995.7628255-CDS-P-wetherbeei_contig13734:851..1059Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13734 852..1059 -
1683185995.77102-CDS-P-wetherbeei_contig13734:1416..16161683185995.77102-CDS-P-wetherbeei_contig13734:1416..1616Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13734 1417..1616 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13734.1.1prot_P-wetherbeei_contig13734.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13734 4..1616 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13734.1.1

>prot_P-wetherbeei_contig13734.1.1 ID=prot_P-wetherbeei_contig13734.1.1|Name=mRNA_P-wetherbeei_contig13734.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=267bp
MARKALVEGAMSVGSLIVRDAAADSYAASARGYLKEVFDQPSAEAAAAFL
CLAFYNMYAGESARADLYLVHAHSFCLNLEEFPLNLELCIEHLSHARLHV
ELRPNFRQWREGHYRVLHVVSHVLSTLKQASFWAIGLASALGIGGRALGR
RGDGALRTCVAELIECMRISVHEAVARLICSSLAALLLVMLGQRPQAAAV
AESITGLVETTPVVVQVMPLCWSAATAAGGLLFVLERHEAHARLHTVLAR
YANATAATACPCGLPSP
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mRNA from alignment at P-wetherbeei_contig13734:4..1616-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13734.1.1 ID=mRNA_P-wetherbeei_contig13734.1.1|Name=mRNA_P-wetherbeei_contig13734.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1613bp|location=Sequence derived from alignment at P-wetherbeei_contig13734:4..1616- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCCGCAAGGCGCTGGTAGAAGGCGCGATGAGCGTCGGCTCGCTCAT
CGTGCGGGACGCGGCGGCGGACTCGTACGCGGCATCGGCGCGCGGCTACC
TCAAGGAGGTGTTCGACCAGCCGAGCGCTGAGGCGGCGGCGGCGTTCCTG
TGCCTCGCCTTCTACAACATGTATGCCGGAGAGAGCGCCCGTGCCGACCT
GTGAGTATTCTTTTGAGGATTCGACGGTTTCGTGTCGATCGATTGGAGGG
GAGAGCGCGAAGGCTAGCGGTAGCGCGGCGTGCGGCGGGCCGGGGTTGCT
TCGGGGATTGTGAAATGGCGTTTTGGCGGCTGGGTGACTCGTGCGTTTTT
TTGGTGTGTGGCCGCGATGGAAACTGCTTGTCGTGCTGTGCGTGCGTTCG
TTTCGGCATGCTACCGCGTCATTGTGCGATGCCATTGGCCCATCCGCTGC
TTCTCACGCCATTCCATTGAAAGTGTTTGGTTCCCGACATGCCAAGTCAA
GTATTCACGTTTTGCCGCCGTTCTCTCTCTTTTGCCTTCTTCTTTTTGAC
GCCCCAGGTACCTCGTGCACGCGCACAGCTTCTGCCTCAACCTGGAGGAG
TTCCCACTCAACCTGGAGCTGTGTATCGAGCACCTCTCGCACGCGCGGCT
TCACGTGGAGTTGCGCCCCAACTTCCGCCAGTGGCGCGAGGGCCATTACC
GCGTGCTGCACGTCGTCAGCCACGTCCTCTCCACGCTCAAGCAGGCGAGT
TTTTGGGCAATTGGCGTTCGGTGATCGCTGTTGTGTTCTGATTGGAAGGA
GGGATCCTGTCCACTGTTCTGTTTCTATCTCGGTTCTTGTCTGCGTCCAC
GGAGCTGAGATTTGGCGCAGCAGCTGCGGTGGCGGCCGCGGCGGCAATTG
CAGGGCGAGAGTGATAGGAAGACGCCGTGCCGCGGCTGAGACCGATTGTC
CTCCTGTCGTGGTGGCAATGCTTGTACAGCGACAAACGGCAGAGGCGACC
GTAATTGTGCAGCGATTAATGGCGGCGGCGACGTGTAGCGTTTTTCCACG
GCGACGAGAAGATGCTGTGGTTTGAGACATCAGGCGATAAGGGCTGCGTC
GATGGCTTCGTCTTCTTGGGAACTTGATCTAATGCCGGCCTTCCTTCTCC
CTCTCCCTTTTTCCTCTTTTCTCCTTACAACAAACAACGGAACCCAAAAC
AACAGGTCCCGCCCGAGCAGCTGGCGTCGGCACTGGGCATCGGTGGCCGC
GCCCTTGGGCGGCGCGGCGACGGCGCGCTCCGCACGTGCGTCGCCGAGCT
GATCGAGTGCATGCGCATCTCGGTGCACGAGGCGGTGGCGCGGCTCATAT
GCAGCTCGCTGGCGGCGCTGCTGCTGGTCATGCTGGGGCAGCGGCCGCAG
GCGGCGGCGGTGGCGGAGAGCATTACGGGCCTGGTGGAGACGACGCCGGT
CGTAGTGCAGGTCATGCCGCTGTGCTGGTCGGCGGCGACGGCGGCGGGCG
GGCTGCTGTTCGTGCTGGAGCGGCACGAGGCGCATGCCCGGCTGCACACA
GTGCTGGCGCGCTACGCCAACGCGACGGCAGCGACGGCCTGCCCCTGCGG
GCTGCCGTCGCCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13734:4..1616-

>mRNA_P-wetherbeei_contig13734.1.1 ID=mRNA_P-wetherbeei_contig13734.1.1|Name=mRNA_P-wetherbeei_contig13734.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=801bp|location=Sequence derived from alignment at P-wetherbeei_contig13734:4..1616- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCCGCAAGGCGCTGGTAGAAGGCGCGATGAGCGTCGGCTCGCTCAT
CGTGCGGGACGCGGCGGCGGACTCGTACGCGGCATCGGCGCGCGGCTACC
TCAAGGAGGTGTTCGACCAGCCGAGCGCTGAGGCGGCGGCGGCGTTCCTG
TGCCTCGCCTTCTACAACATGTATGCCGGAGAGAGCGCCCGTGCCGACCT
GTACCTCGTGCACGCGCACAGCTTCTGCCTCAACCTGGAGGAGTTCCCAC
TCAACCTGGAGCTGTGTATCGAGCACCTCTCGCACGCGCGGCTTCACGTG
GAGTTGCGCCCCAACTTCCGCCAGTGGCGCGAGGGCCATTACCGCGTGCT
GCACGTCGTCAGCCACGTCCTCTCCACGCTCAAGCAGGCGAGTTTTTGGG
CAATTGGCCTGGCGTCGGCACTGGGCATCGGTGGCCGCGCCCTTGGGCGG
CGCGGCGACGGCGCGCTCCGCACGTGCGTCGCCGAGCTGATCGAGTGCAT
GCGCATCTCGGTGCACGAGGCGGTGGCGCGGCTCATATGCAGCTCGCTGG
CGGCGCTGCTGCTGGTCATGCTGGGGCAGCGGCCGCAGGCGGCGGCGGTG
GCGGAGAGCATTACGGGCCTGGTGGAGACGACGCCGGTCGTAGTGCAGGT
CATGCCGCTGTGCTGGTCGGCGGCGACGGCGGCGGGCGGGCTGCTGTTCG
TGCTGGAGCGGCACGAGGCGCATGCCCGGCTGCACACAGTGCTGGCGCGC
TACGCCAACGCGACGGCAGCGACGGCCTGCCCCTGCGGGCTGCCGTCGCC
G
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