mRNA_P-wetherbeei_contig13726.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13726.1.1
Unique NamemRNA_P-wetherbeei_contig13726.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig13726.1.1 vs. uniprot
Match: A0A7C3JRL0_9PROT (Tetratricopeptide repeat protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A7C3JRL0_9PROT)

HSP 1 Score: 75.1 bits (183), Expect = 1.360e-12
Identity = 38/54 (70.37%), Postives = 42/54 (77.78%), Query Frame = 1 
Query:    1 AQERLQAGDAVGAQRLCEEVLARAPRNPDALCLLGITLLMAARPRDAVSPLTQA 162
            A +RL+ GDA GA+ LCEEVL RAPRNPDALCLLG+T L   R RDAV PL QA
Sbjct:   37 AHDRLREGDAAGAEFLCEEVLQRAPRNPDALCLLGLTRLATGRARDAVPPLQQA 90
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BLAST of mRNA_P-wetherbeei_contig13726.1.1 vs. uniprot
Match: A0A1F4DV50_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58 TaxID=1797497 RepID=A0A1F4DV50_9PROT)

HSP 1 Score: 63.2 bits (152), Expect = 1.840e-8
Identity = 31/43 (72.09%), Postives = 35/43 (81.40%), Query Frame = 1 
Query:    1 AQERLQAGDAVGAQRLCEEVLARAPRNPDALCLLGITLLMAAR 129
            AQERLQ GD  GAQ LCE+VL RAPRNPDALCLLG+  L++ R
Sbjct:   12 AQERLQNGDVAGAQFLCEQVLQRAPRNPDALCLLGMARLISGR 54
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BLAST of mRNA_P-wetherbeei_contig13726.1.1 vs. uniprot
Match: A0A1F4CQN7_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_13 TaxID=1797495 RepID=A0A1F4CQN7_9PROT)

HSP 1 Score: 60.8 bits (146), Expect = 1.150e-7
Identity = 28/41 (68.29%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:   22 GDAVGAQRLCEEVLARAPRNPDALCLLGITLLMAARPRDAV 144
            GD  GAQ LCE+VL RAPRNP+ALCLLG++ LM+ RP +AV
Sbjct:    2 GDVAGAQFLCEQVLQRAPRNPEALCLLGVSHLMSGRPAEAV 42
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13726.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A7C3JRL0_9PROT1.360e-1270.37Tetratricopeptide repeat protein n=1 Tax=Betaprote... [more]
A0A1F4DV50_9PROT1.840e-872.09Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A1F4CQN7_9PROT1.150e-768.29Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13726contigP-wetherbeei_contig13726:627..1145 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size519
Hectar predicted targeting categoryother localisation
Exons1
Cds size519
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185995.6056595-CDS-P-wetherbeei_contig13726:626..11451683185995.6056595-CDS-P-wetherbeei_contig13726:626..1145Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13726 627..1145 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13726.1.1prot_P-wetherbeei_contig13726.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13726 627..1145 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13726.1.1

>prot_P-wetherbeei_contig13726.1.1 ID=prot_P-wetherbeei_contig13726.1.1|Name=mRNA_P-wetherbeei_contig13726.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=173bp
AQERLQAGDAVGAQRLCEEVLARAPRNPDALCLLGITLLMAARPRDAVSP
LTQALAAQPRHGAALENLGLAHLMLGEFADAERALDTAAALPNAPASVYM
RLGAAILNQGRHAAAIPQLERALKLAANNPDIHLNLGQALAGAGDMAAAR
RQFETALRLAPDHADSMYNLGVI
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mRNA from alignment at P-wetherbeei_contig13726:627..1145+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13726.1.1 ID=mRNA_P-wetherbeei_contig13726.1.1|Name=mRNA_P-wetherbeei_contig13726.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=519bp|location=Sequence derived from alignment at P-wetherbeei_contig13726:627..1145+ (Phaeothamnion wetherbeei SAG_119_79)
GCCCAAGAGCGCCTGCAGGCCGGCGATGCTGTCGGCGCACAGCGGCTGTG
CGAGGAGGTGCTGGCACGCGCTCCGCGCAATCCCGATGCGCTGTGCCTGC
TCGGCATCACGCTGCTGATGGCTGCGCGCCCGCGCGATGCGGTCTCACCA
CTCACCCAGGCGCTCGCCGCCCAGCCGCGTCACGGTGCCGCCCTCGAAAA
CCTCGGCCTTGCCCATCTGATGCTGGGCGAATTTGCCGACGCCGAACGCG
CGCTCGACACCGCCGCCGCGCTGCCAAATGCACCGGCCTCGGTATACATG
CGCCTGGGGGCGGCCATCCTCAACCAGGGACGCCACGCCGCAGCGATTCC
GCAGCTCGAGCGCGCGCTCAAACTCGCCGCAAACAATCCCGATATCCATC
TGAACCTGGGGCAAGCGCTGGCCGGCGCCGGCGACATGGCGGCTGCGCGC
CGTCAATTCGAGACCGCGCTGCGCCTCGCACCCGACCATGCCGACTCCAT
GTACAACCTCGGCGTAATC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13726:627..1145+

>mRNA_P-wetherbeei_contig13726.1.1 ID=mRNA_P-wetherbeei_contig13726.1.1|Name=mRNA_P-wetherbeei_contig13726.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=519bp|location=Sequence derived from alignment at P-wetherbeei_contig13726:627..1145+ (Phaeothamnion wetherbeei SAG_119_79)
GCCCAAGAGCGCCTGCAGGCCGGCGATGCTGTCGGCGCACAGCGGCTGTG
CGAGGAGGTGCTGGCACGCGCTCCGCGCAATCCCGATGCGCTGTGCCTGC
TCGGCATCACGCTGCTGATGGCTGCGCGCCCGCGCGATGCGGTCTCACCA
CTCACCCAGGCGCTCGCCGCCCAGCCGCGTCACGGTGCCGCCCTCGAAAA
CCTCGGCCTTGCCCATCTGATGCTGGGCGAATTTGCCGACGCCGAACGCG
CGCTCGACACCGCCGCCGCGCTGCCAAATGCACCGGCCTCGGTATACATG
CGCCTGGGGGCGGCCATCCTCAACCAGGGACGCCACGCCGCAGCGATTCC
GCAGCTCGAGCGCGCGCTCAAACTCGCCGCAAACAATCCCGATATCCATC
TGAACCTGGGGCAAGCGCTGGCCGGCGCCGGCGACATGGCGGCTGCGCGC
CGTCAATTCGAGACCGCGCTGCGCCTCGCACCCGACCATGCCGACTCCAT
GTACAACCTCGGCGTAATC
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