mRNA_P-wetherbeei_contig13713.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13713.1.1
Unique NamemRNA_P-wetherbeei_contig13713.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig13713.1.1 vs. uniprot
Match: F4G5P3_ALIDK (Butyryl-CoA dehydrogenase n=4 Tax=Alicycliphilus denitrificans TaxID=179636 RepID=F4G5P3_ALIDK)

HSP 1 Score: 359 bits (922), Expect = 5.560e-121
Identity = 181/265 (68.30%), Postives = 204/265 (76.98%), Query Frame = 1
Query:    4 GEQIWCQGDSEPNAGSDLASLRTRAVREGDEYVITGQKIWTTLAQDATHMFCLVRTDPQAKPQAGISFVLIDLAVPGITIRPIKNIAGDAEFCEVFLDSVRIPVSALVGQENDGWTIAKALLSFERIFVGSPKTCQYALNRLEALAQARGLHSDPVFVDKLTGYLLDVADLESLYKEFAAIMKRGETLGADVSLLKIFASETFSRLSEFIVECAGPAGARVGAANFGEQSIDVLSPYYNARPTPIYGGSNEIQRNIIAKQVLNLP 798
            GE IWCQG SEPNAGSDLASLRT AV +GDEYVITG KIWT+ A DATHMF LVRTD QAK Q GISF+L+D+  PGIT+RPI+N+ G   F EVFLD VR P   LVGQ N GWTIAKALL FERI +GSPK  Q  L RLE + QARGL +D  F+D+LT   L+VADL S Y  FA I+KRG TLG DVSLLKIFASETF R++E  +E  G AGA  G   FG+ +ID+LSP+YNARP+ IYGGSNEIQRNIIAK VLNLP
Sbjct:  120 GEYIWCQGYSEPNAGSDLASLRTEAVLDGDEYVITGSKIWTSFAMDATHMFLLVRTDKQAKKQEGISFMLVDMKSPGITVRPIRNLNGSEHFAEVFLDQVRTPARWLVGQPNQGWTIAKALLGFERISIGSPKLSQTGLQRLERIVQARGLTADAAFMDRLTQLKLNVADLTSAYGRFAEIVKRGGTLGPDVSLLKIFASETFQRITELTLEAGGDAGAIEGEVPFGDAAIDILSPFYNARPSTIYGGSNEIQRNIIAKSVLNLP 384          
BLAST of mRNA_P-wetherbeei_contig13713.1.1 vs. uniprot
Match: A0A1Z9UGS7_9GAMM (Uncharacterized protein n=3 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A1Z9UGS7_9GAMM)

HSP 1 Score: 369 bits (948), Expect = 6.670e-120
Identity = 179/265 (67.55%), Postives = 211/265 (79.62%), Query Frame = 1
Query:    4 GEQIWCQGDSEPNAGSDLASLRTRAVREGDEYVITGQKIWTTLAQDATHMFCLVRTDPQAKPQAGISFVLIDLAVPGITIRPIKNIAGDAEFCEVFLDSVRIPVSALVGQENDGWTIAKALLSFERIFVGSPKTCQYALNRLEALAQARGLHSDPVFVDKLTGYLLDVADLESLYKEFAAIMKRGETLGADVSLLKIFASETFSRLSEFIVECAGPAGARVGAANFGEQSIDVLSPYYNARPTPIYGGSNEIQRNIIAKQVLNLP 798
            GE++WCQG SEPNAGSDLASL+T A+  GDE++I GQK WTTLAQDA+HMFCL RT  + KPQ GISF LIDL  PG+TIRPIKN+AGD EFCEVFLD VR+P   LVG  N+GWTIAKALLSFERIF+GSPK  QYA+ RLE LA+A G+     F +KLT   L+V DLES Y++FA I++RG+TLG DVSLLKI+ +ETF+RLSE +VE AG  GA +G   FG+  +DV+S +YNARP  IYGGSNEIQRNIIAK VLNLP
Sbjct:  515 GEEVWCQGYSEPNAGSDLASLKTEAIANGDEFIINGQKTWTTLAQDASHMFCLARTSKEGKPQEGISFFLIDLDQPGVTIRPIKNLAGDEEFCEVFLDDVRVPADCLVGAINEGWTIAKALLSFERIFIGSPKQSQYAVKRLEVLAKASGVFQKNTFREKLTRLKLNVLDLESTYQQFADIVRRGDTLGPDVSLLKIWGTETFARLSELMVETAGAEGASIGKIAFGDTEVDVMSQFYNARPATIYGGSNEIQRNIIAKGVLNLP 779          
BLAST of mRNA_P-wetherbeei_contig13713.1.1 vs. uniprot
Match: A0A562ZS44_9BURK (Acyl-CoA dehydrogenase n=1 Tax=Caenimonas sp. HX-9-20 TaxID=2596921 RepID=A0A562ZS44_9BURK)

HSP 1 Score: 344 bits (883), Expect = 4.410e-115
Identity = 170/265 (64.15%), Postives = 204/265 (76.98%), Query Frame = 1
Query:    7 EQIWCQGDSEPNAGSDLASLRTRAVREGDEYVITGQKIWTTLAQDATHMFCLVRTDPQAKPQAGISFVLIDLAVPGITIRPIKNIAGDAEFCEVFLDSVRIPVSALVGQENDGWTIAKALLSFERIFVGSPKTCQYALNRLEALAQARGLHSDPVFVDKLTGYLLDVADLESLYKEFAAIMKRGETLGADVSLLKIFASETFSRLSEFIVECAGPAGARVGAANFGEQSIDVLSPYYNARPTPIYGGSNEIQRNIIAKQVLNLPS 801
            E IWCQG SEPN+GSDLASLRT AV +GD+++++GQK WTTLAQDATH+F LVRTD  AK Q GISF+L D+  PGIT+RPI+NIAG+ +FCEVFLD+VR+P S  VG+ N GWTIAKALLSFERIF+GSPK  QYAL R+   A+  GL  DPVF D+ T   LDVADL +LY  F   +KRGETLG DVS+LK+FA+ET+SRL+  +VE AG +G   G       SIDVL+ +YNARP  IYGGSNEIQRNI+A  VL LP+
Sbjct:  120 EDIWCQGYSEPNSGSDLASLRTEAVEDGDDFIVSGQKTWTTLAQDATHIFLLVRTDKAAKKQEGISFLLADMKSPGITVRPIRNIAGNEDFCEVFLDNVRVPRSQRVGELNRGWTIAKALLSFERIFLGSPKQSQYALARVREAAELLGLFDDPVFTDRYTQLALDVADLGTLYTRFVDQVKRGETLGPDVSMLKVFATETYSRLANLLVEIAGASGGTPGDIEIEGGSIDVLTTFYNARPATIYGGSNEIQRNILATSVLQLPA 384          
BLAST of mRNA_P-wetherbeei_contig13713.1.1 vs. uniprot
Match: A0A1E4PN36_9BURK (Acyl-CoA dehydrogenase n=1 Tax=Rubrivivax sp. SCN 70-15 TaxID=1660139 RepID=A0A1E4PN36_9BURK)

HSP 1 Score: 341 bits (875), Expect = 7.690e-114
Identity = 172/265 (64.91%), Postives = 200/265 (75.47%), Query Frame = 1
Query:    7 EQIWCQGDSEPNAGSDLASLRTRAVREGDEYVITGQKIWTTLAQDATHMFCLVRTDPQAKPQAGISFVLIDLAVPGITIRPIKNIAGDAEFCEVFLDSVRIPVSALVGQENDGWTIAKALLSFERIFVGSPKTCQYALNRLEALAQARGLHSDPVFVDKLTGYLLDVADLESLYKEFAAIMKRGETLGADVSLLKIFASETFSRLSEFIVECAGPAGARVGAANFGEQSIDVLSPYYNARPTPIYGGSNEIQRNIIAKQVLNLPS 801
            E IWCQG SEPN+GSDLASLRT AV +GD +V+ GQKIWTTLAQDATH+F LVRTD  AK Q GISF+L D+  PGIT+RPI+NIAG+ EFCEVF D+VR+P + +VG  + GWTIAKALL FERIF+GSPK  QY L RL A A+  GL  DPVF D+ T   LDVADL +LY  F   +KRGE LG DVS+LKIFA+ET SRL+  +VE AG +GA  G       SIDVL+ +YNARP  IYGGSNEIQRNI+A  VL LPS
Sbjct:  121 EHIWCQGYSEPNSGSDLASLRTEAVVDGDHFVVNGQKIWTTLAQDATHIFLLVRTDKAAKKQEGISFLLADMKSPGITVRPIRNIAGEEEFCEVFFDNVRVPRANIVGGLHQGWTIAKALLGFERIFIGSPKQSQYVLGRLRAAARQLGLFDDPVFADRYTQLALDVADLGTLYGRFVEQVKRGEALGPDVSMLKIFATETCSRLANLLVEVAGASGAMPGDIEVEGGSIDVLTTFYNARPATIYGGSNEIQRNILATAVLRLPS 385          
BLAST of mRNA_P-wetherbeei_contig13713.1.1 vs. uniprot
Match: A0A521XU32_9PROT (Acyl-CoA dehydrogenase n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A521XU32_9PROT)

HSP 1 Score: 340 bits (873), Expect = 1.450e-113
Identity = 168/266 (63.16%), Postives = 201/266 (75.56%), Query Frame = 1
Query:    4 GEQIWCQGDSEPNAGSDLASLRTRAVREGDEYVITGQKIWTTLAQDATHMFCLVRTDPQAKPQAGISFVLIDLAVPGITIRPIKNIAGDAEFCEVFLDSVRIPVSALVGQENDGWTIAKALLSFERIFVGSPKTCQYALNRLEALAQARGLHSDPVFVDKLTGYLLDVADLESLYKEFAAIMKRGETLGADVSLLKIFASETFSRLSEFIVECAGPAGARVGAANFGEQSIDVLSPYYNARPTPIYGGSNEIQRNIIAKQVLNLPS 801
            GE IWCQG SEPNAGSDLASL+  AV + DEYVI G K WT+ A DATHMF L RTD +AK Q GISF+L+D+  PGIT+RPI+N+ G   F EVFLD+VR P   LVG+ N GWT+AKALL FERI +GSPK  Q  L RL+A+ +++GL  DP F+D+ T   LDVADL S Y  FA ++KRGETLG DVS+LKI A+ETF RL+E  +E AG AGA  G A F + S+D+LSP+YNARP  IYGGSNEIQRNI+AK VL+LPS
Sbjct:  119 GEYIWCQGYSEPNAGSDLASLKVEAVLDRDEYVINGSKTWTSYAMDATHMFILARTDKKAKKQEGISFLLVDMKTPGITVRPIRNLLGVEVFAEVFLDNVRTPAKWLVGKPNQGWTMAKALLGFERISIGSPKLAQTGLKRLDAIVRSQGLTQDPAFMDRYTQLRLDVADLASTYSRFADLLKRGETLGPDVSILKIVATETFQRLTELTLEAAGDAGAIGGKAAFRKDSVDILSPFYNARPATIYGGSNEIQRNILAKNVLDLPS 384          
BLAST of mRNA_P-wetherbeei_contig13713.1.1 vs. uniprot
Match: A0A7Y6TXU5_9BURK (Acyl-CoA dehydrogenase family protein n=5 Tax=Burkholderiales TaxID=80840 RepID=A0A7Y6TXU5_9BURK)

HSP 1 Score: 340 bits (871), Expect = 3.310e-113
Identity = 168/265 (63.40%), Postives = 204/265 (76.98%), Query Frame = 1
Query:    7 EQIWCQGDSEPNAGSDLASLRTRAVREGDEYVITGQKIWTTLAQDATHMFCLVRTDPQAKPQAGISFVLIDLAVPGITIRPIKNIAGDAEFCEVFLDSVRIPVSALVGQENDGWTIAKALLSFERIFVGSPKTCQYALNRLEALAQARGLHSDPVFVDKLTGYLLDVADLESLYKEFAAIMKRGETLGADVSLLKIFASETFSRLSEFIVECAGPAGARVGAANFGEQSIDVLSPYYNARPTPIYGGSNEIQRNIIAKQVLNLPS 801
            + IWCQG SEPN+GSDLASLRT AV +GD++++TGQKIWTTLAQDATH+F LVRTD  AK Q GISF+L  +  PGIT+RPI+NIAG  +FCEVFLD VR+P + +VG+ N GWTIAKALL FERIF+GSPK  QYAL+R+E  A A GL  DPVF D+ T   LDVADL +LY  F   +KRGE LG +VS+LKIFA+ET+SRL+  +VE AG +G+  G       +IDVL+ +YNARP  IYGGSNE+QRNI+A  VL LPS
Sbjct:  124 QDIWCQGYSEPNSGSDLASLRTEAVPDGDDFIVTGQKIWTTLAQDATHIFLLVRTDKAAKKQEGISFLLAHMKSPGITVRPIRNIAGAEDFCEVFLDKVRVPRANIVGELNKGWTIAKALLGFERIFLGSPKQSQYALSRVEEAAAALGLLDDPVFSDRFTQLALDVADLGTLYARFVEQVKRGEALGPEVSMLKIFATETYSRLANLLVEIAGASGSTPGDVPTDSGTIDVLTTFYNARPATIYGGSNEVQRNILAGAVLQLPS 388          
BLAST of mRNA_P-wetherbeei_contig13713.1.1 vs. uniprot
Match: K2K251_9PROT (Acyl-CoA dehydrogenase-like protein n=3 Tax=Oceanibaculum TaxID=659693 RepID=K2K251_9PROT)

HSP 1 Score: 339 bits (869), Expect = 7.580e-113
Identity = 168/264 (63.64%), Postives = 198/264 (75.00%), Query Frame = 1
Query:   13 IWCQGDSEPNAGSDLASLRTRAVREGDEYVITGQKIWTTLAQDATHMFCLVRTDPQAKPQAGISFVLIDLAVPGITIRPIKNIAGDAEFCEVFLDSVRIPVSALVGQENDGWTIAKALLSFERIFVGSPKTCQYALNRLEALAQARGLHSDPVFVDKLTGYLLDVADLESLYKEFAAIMKRGETLGADVSLLKIFASETFSRLSEFIVECAGPAGARVGAANFGEQSIDVLSPYYNARPTPIYGGSNEIQRNIIAKQVLNLPSR 804
            IWCQG SEP +GSDLASL+T+AVR+GDEYVITGQKIWTTLAQDATHMF LVRTDP AK Q GISF+L+D+A  G+T+RPI++IAG  EFCEVFLD    PVS LVG+ N GWT+AK+LL FERI +GSPK  +Y L  LE +AQA+G+  DPVF +K     LDVA L   Y  F  I+ RGE LG DVS LKI+ASETF R+++ +VE AGP  A  G    G   IDVL+ +Y ARP  IYGG+NEIQR IIA+QVL LP R
Sbjct:  129 IWCQGYSEPGSGSDLASLKTKAVRDGDEYVITGQKIWTTLAQDATHMFVLVRTDPDAKKQEGISFMLLDMAQKGVTVRPIRDIAGHEEFCEVFLDEAHTPVSNLVGELNKGWTVAKSLLGFERIHIGSPKMPEYGLTVLERVAQAQGVWDDPVFREKYVALKLDVAHLTDAYNHFTGIVVRGEQLGQDVSYLKIWASETFQRIADLVVETAGPFAAINGEVGIGNSEIDVLASFYKARPPTIYGGTNEIQRTIIAQQVLGLPRR 392          
BLAST of mRNA_P-wetherbeei_contig13713.1.1 vs. uniprot
Match: A0A154W652_9PROT (Acyl-CoA dehydrogenase n=1 Tax=Oceanibaculum pacificum TaxID=580166 RepID=A0A154W652_9PROT)

HSP 1 Score: 338 bits (866), Expect = 2.160e-112
Identity = 167/264 (63.26%), Postives = 200/264 (75.76%), Query Frame = 1
Query:   13 IWCQGDSEPNAGSDLASLRTRAVREGDEYVITGQKIWTTLAQDATHMFCLVRTDPQAKPQAGISFVLIDLAVPGITIRPIKNIAGDAEFCEVFLDSVRIPVSALVGQENDGWTIAKALLSFERIFVGSPKTCQYALNRLEALAQARGLHSDPVFVDKLTGYLLDVADLESLYKEFAAIMKRGETLGADVSLLKIFASETFSRLSEFIVECAGPAGARVGAANFGEQSIDVLSPYYNARPTPIYGGSNEIQRNIIAKQVLNLPSR 804
            IWCQG SEP +GSDLASL+TRAVREGD +VITGQKIWTTLAQDATHMF LVRTD +AK Q GISF+L+DLA  G+TIRPI+++AG  EFCEVFLD VR P S LVG+ N GWT+AK+LL FERI VGSPK  +Y L  LE +A+ARGL  DP F +K     LDVA L   Y  F  I+ RGE LG D+S LKI+A+E+F R+++ ++E AGP  A  G    G+ S+DVL+ +Y ARP  IYGGSNEIQRNI+A+QVL LP R
Sbjct:  129 IWCQGYSEPGSGSDLASLKTRAVREGDAFVITGQKIWTTLAQDATHMFVLVRTDFEAKKQEGISFLLVDLAQDGVTIRPIRDMAGHEEFCEVFLDGVRTPASNLVGELNKGWTVAKSLLGFERIHVGSPKMPEYGLTVLEKIARARGLWDDPAFREKYVRLKLDVAHLSDAYNHFTGIVVRGEALGQDISYLKIWATESFQRIADLVIETAGPFAALNGEVEIGDTSVDVLASFYKARPPTIYGGSNEIQRNILAQQVLGLPRR 392          
BLAST of mRNA_P-wetherbeei_contig13713.1.1 vs. uniprot
Match: W7WU22_9BURK (Acyl-CoA dehydrogenase n=18 Tax=Proteobacteria TaxID=1224 RepID=W7WU22_9BURK)

HSP 1 Score: 335 bits (858), Expect = 3.190e-111
Identity = 163/266 (61.28%), Postives = 201/266 (75.56%), Query Frame = 1
Query:    4 GEQIWCQGDSEPNAGSDLASLRTRAVREGDEYVITGQKIWTTLAQDATHMFCLVRTDPQAKPQAGISFVLIDLAVPGITIRPIKNIAGDAEFCEVFLDSVRIPVSALVGQENDGWTIAKALLSFERIFVGSPKTCQYALNRLEALAQARGLHSDPVFVDKLTGYLLDVADLESLYKEFAAIMKRGETLGADVSLLKIFASETFSRLSEFIVECAGPAGARVGAANFGEQSIDVLSPYYNARPTPIYGGSNEIQRNIIAKQVLNLPS 801
            GE IWCQG SEPN+GSDLASLRT AV +GD++++ GQK WTTLAQDATH+F LVRTD  AK Q GISF+L D+  PGIT+RPI+NIAG  +FCEVFL++VR+P S++VG+ N GWTIAKALL FERIF+GSPK  QYAL R++  AQ  GL  D  FVD+ T   LDVADL +LY  F   +KRGETLG DVS+LK+F +ET+SRL++ +V+  G +G   G+        D L+ +YNARP  IYGGSNE+QRNI+A  VL LPS
Sbjct:  124 GEHIWCQGYSEPNSGSDLASLRTEAVVDGDDFIVNGQKTWTTLAQDATHIFLLVRTDKSAKKQEGISFLLADMKTPGITVRPIRNIAGSEDFCEVFLENVRVPRSSIVGELNKGWTIAKALLGFERIFLGSPKQSQYALARVQEAAQRLGLFEDTGFVDRYTKLALDVADLGALYGRFIEQVKRGETLGPDVSMLKLFGTETYSRLADLLVDVMGSSGGTPGSTALPGGKTDALTSFYNARPATIYGGSNEVQRNILAASVLKLPS 389          
BLAST of mRNA_P-wetherbeei_contig13713.1.1 vs. uniprot
Match: A0A4P6WX69_HYDPS (Acyl-CoA dehydrogenase n=1 Tax=Hydrogenophaga pseudoflava TaxID=47421 RepID=A0A4P6WX69_HYDPS)

HSP 1 Score: 335 bits (858), Expect = 3.300e-111
Identity = 164/266 (61.65%), Postives = 202/266 (75.94%), Query Frame = 1
Query:    4 GEQIWCQGDSEPNAGSDLASLRTRAVREGDEYVITGQKIWTTLAQDATHMFCLVRTDPQAKPQAGISFVLIDLAVPGITIRPIKNIAGDAEFCEVFLDSVRIPVSALVGQENDGWTIAKALLSFERIFVGSPKTCQYALNRLEALAQARGLHSDPVFVDKLTGYLLDVADLESLYKEFAAIMKRGETLGADVSLLKIFASETFSRLSEFIVECAGPAGARVGAANFGEQSIDVLSPYYNARPTPIYGGSNEIQRNIIAKQVLNLPS 801
            GE IWCQG SEPN+GSDLASLRT AV +G+ +++ GQK WTTLAQDATH+F LVRTD QAK Q GISF+L D+  PGI++RPI+NIAG  +FCEVFL++VR+P + +VG+ N GWTIAKALL FERIF+GSPK  QYAL R++  AQ  GL  D  FVD+ T   LDVADL +LY  F   +KRGETLG DVS+LK+FA+ET+SRL++ +V+ AG +G   G         DVL+ +YNARP  IYGGSNE+QRNI+A  VL LPS
Sbjct:  125 GEHIWCQGYSEPNSGSDLASLRTEAVADGEHFIVNGQKTWTTLAQDATHIFLLVRTDKQAKKQQGISFLLADMKTPGISVRPIRNIAGSEDFCEVFLENVRVPRANIVGELNKGWTIAKALLGFERIFLGSPKQSQYALARVQEAAQRLGLFQDTGFVDRYTKLALDVADLGALYGRFIEQVKRGETLGPDVSMLKLFATETYSRLADLLVDIAGSSGGMPGDIALPGGKTDVLTTFYNARPATIYGGSNEVQRNILAASVLQLPS 390          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13713.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
F4G5P3_ALIDK5.560e-12168.30Butyryl-CoA dehydrogenase n=4 Tax=Alicycliphilus d... [more]
A0A1Z9UGS7_9GAMM6.670e-12067.55Uncharacterized protein n=3 Tax=Gammaproteobacteri... [more]
A0A562ZS44_9BURK4.410e-11564.15Acyl-CoA dehydrogenase n=1 Tax=Caenimonas sp. HX-9... [more]
A0A1E4PN36_9BURK7.690e-11464.91Acyl-CoA dehydrogenase n=1 Tax=Rubrivivax sp. SCN ... [more]
A0A521XU32_9PROT1.450e-11363.16Acyl-CoA dehydrogenase n=1 Tax=Betaproteobacteria ... [more]
A0A7Y6TXU5_9BURK3.310e-11363.40Acyl-CoA dehydrogenase family protein n=5 Tax=Burk... [more]
K2K251_9PROT7.580e-11363.64Acyl-CoA dehydrogenase-like protein n=3 Tax=Oceani... [more]
A0A154W652_9PROT2.160e-11263.26Acyl-CoA dehydrogenase n=1 Tax=Oceanibaculum pacif... [more]
W7WU22_9BURK3.190e-11161.28Acyl-CoA dehydrogenase n=18 Tax=Proteobacteria Tax... [more]
A0A4P6WX69_HYDPS3.300e-11161.65Acyl-CoA dehydrogenase n=1 Tax=Hydrogenophaga pseu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13713contigP-wetherbeei_contig13713:2..808 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog596154.Alide2_1836
PFAMsAcyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N
Model size807
Max annot lvl28216|Betaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue9.12e-122
EggNOG OGsCOG1960@1|root,COG1960@2|Bacteria,1MVJC@1224|Proteobacteria,2VK7F@28216|Betaproteobacteria,4AJ1Q@80864|Comamonadaceae
DescriptionAcyl-CoA dehydrogenase, middle domain
Cds size807
COG categoryC
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185995.3272686-CDS-P-wetherbeei_contig13713:1..8081683185995.3272686-CDS-P-wetherbeei_contig13713:1..808Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13713 2..808 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13713.1.1prot_P-wetherbeei_contig13713.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13713 2..808 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13713.1.1

>prot_P-wetherbeei_contig13713.1.1 ID=prot_P-wetherbeei_contig13713.1.1|Name=mRNA_P-wetherbeei_contig13713.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=269bp
SGEQIWCQGDSEPNAGSDLASLRTRAVREGDEYVITGQKIWTTLAQDATH
MFCLVRTDPQAKPQAGISFVLIDLAVPGITIRPIKNIAGDAEFCEVFLDS
VRIPVSALVGQENDGWTIAKALLSFERIFVGSPKTCQYALNRLEALAQAR
GLHSDPVFVDKLTGYLLDVADLESLYKEFAAIMKRGETLGADVSLLKIFA
SETFSRLSEFIVECAGPAGARVGAANFGEQSIDVLSPYYNARPTPIYGGS
NEIQRNIIAKQVLNLPSR*
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mRNA from alignment at P-wetherbeei_contig13713:2..808+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13713.1.1 ID=mRNA_P-wetherbeei_contig13713.1.1|Name=mRNA_P-wetherbeei_contig13713.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=807bp|location=Sequence derived from alignment at P-wetherbeei_contig13713:2..808+ (Phaeothamnion wetherbeei SAG_119_79)
TCAGGCGAACAGATCTGGTGTCAGGGCGATTCCGAACCCAACGCCGGCTC TGATCTCGCGTCCTTGCGCACGCGTGCTGTTCGCGAAGGCGATGAGTATG TGATCACCGGCCAGAAGATCTGGACCACCCTCGCGCAGGACGCCACCCAT ATGTTCTGCCTGGTGCGCACCGACCCGCAAGCCAAACCGCAGGCCGGCAT CAGCTTCGTATTGATAGATCTTGCCGTGCCCGGCATCACCATCCGTCCGA TCAAAAACATCGCCGGCGATGCCGAGTTCTGCGAAGTATTCCTGGACAGT GTGCGCATTCCGGTCAGTGCCCTGGTCGGACAGGAGAACGATGGCTGGAC CATCGCCAAGGCGCTGCTGAGCTTCGAGCGCATCTTCGTCGGTAGCCCCA AGACCTGTCAGTACGCCTTGAATCGCCTCGAAGCCTTGGCGCAGGCGCGT GGCTTGCACAGCGACCCGGTATTCGTCGACAAGCTGACGGGCTATTTGCT CGATGTCGCGGATCTGGAGTCACTGTACAAGGAGTTCGCGGCCATCATGA AGCGCGGTGAAACCCTCGGCGCCGATGTTTCGCTGCTCAAGATCTTCGCC AGTGAAACGTTCTCGCGCCTGAGCGAATTTATAGTGGAATGCGCCGGGCC GGCCGGCGCGCGCGTCGGTGCAGCGAACTTTGGCGAACAGTCCATCGATG TGCTGAGCCCCTATTACAATGCGCGGCCGACGCCAATCTATGGCGGCAGC AACGAGATCCAACGCAATATCATCGCCAAGCAGGTGCTGAACCTGCCGTC GCGTTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13713:2..808+

>mRNA_P-wetherbeei_contig13713.1.1 ID=mRNA_P-wetherbeei_contig13713.1.1|Name=mRNA_P-wetherbeei_contig13713.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=807bp|location=Sequence derived from alignment at P-wetherbeei_contig13713:2..808+ (Phaeothamnion wetherbeei SAG_119_79)
TCAGGCGAACAGATCTGGTGTCAGGGCGATTCCGAACCCAACGCCGGCTC
TGATCTCGCGTCCTTGCGCACGCGTGCTGTTCGCGAAGGCGATGAGTATG
TGATCACCGGCCAGAAGATCTGGACCACCCTCGCGCAGGACGCCACCCAT
ATGTTCTGCCTGGTGCGCACCGACCCGCAAGCCAAACCGCAGGCCGGCAT
CAGCTTCGTATTGATAGATCTTGCCGTGCCCGGCATCACCATCCGTCCGA
TCAAAAACATCGCCGGCGATGCCGAGTTCTGCGAAGTATTCCTGGACAGT
GTGCGCATTCCGGTCAGTGCCCTGGTCGGACAGGAGAACGATGGCTGGAC
CATCGCCAAGGCGCTGCTGAGCTTCGAGCGCATCTTCGTCGGTAGCCCCA
AGACCTGTCAGTACGCCTTGAATCGCCTCGAAGCCTTGGCGCAGGCGCGT
GGCTTGCACAGCGACCCGGTATTCGTCGACAAGCTGACGGGCTATTTGCT
CGATGTCGCGGATCTGGAGTCACTGTACAAGGAGTTCGCGGCCATCATGA
AGCGCGGTGAAACCCTCGGCGCCGATGTTTCGCTGCTCAAGATCTTCGCC
AGTGAAACGTTCTCGCGCCTGAGCGAATTTATAGTGGAATGCGCCGGGCC
GGCCGGCGCGCGCGTCGGTGCAGCGAACTTTGGCGAACAGTCCATCGATG
TGCTGAGCCCCTATTACAATGCGCGGCCGACGCCAATCTATGGCGGCAGC
AACGAGATCCAACGCAATATCATCGCCAAGCAGGTGCTGAACCTGCCGTC
GCGTTAA
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