mRNA_P-wetherbeei_contig13689.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13689.1.1
Unique NamemRNA_P-wetherbeei_contig13689.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig13689.1.1 vs. uniprot
Match: A0A2R5GCX2_9STRA (E3 ubiquitin-protein ligase HECTD3 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GCX2_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 1.600e-6
Identity = 22/37 (59.46%), Postives = 29/37 (78.38%), Query Frame = 1 
Query:    1 ERLMSHAEVPLDRWTHVALVADAGKLRLYLNGALDSQ 111
            ER++S   +PL+ WTHVA+V D GKLRL++NG LD Q
Sbjct: 2672 ERVVSKDAIPLNAWTHVAIVMDQGKLRLFINGDLDGQ 2708
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BLAST of mRNA_P-wetherbeei_contig13689.1.1 vs. uniprot
Match: A0A8K1C5J5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C5J5_PYTOL)

HSP 1 Score: 47.8 bits (112), Expect = 3.690e-5
Identity = 21/37 (56.76%), Postives = 28/37 (75.68%), Query Frame = 1 
Query:    1 ERLMSHAEVPLDRWTHVALVADAGKLRLYLNGALDSQ 111
            ERL++   +PL RW HVA+V +  K+RLY+NG LDSQ
Sbjct:  254 ERLVTKDPIPLRRWIHVAVVLEGLKMRLYINGILDSQ 290
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BLAST of mRNA_P-wetherbeei_contig13689.1.1 vs. uniprot
Match: W2PWJ9_PHYPN (Uncharacterized protein n=9 Tax=Phytophthora TaxID=4783 RepID=W2PWJ9_PHYPN)

HSP 1 Score: 46.6 bits (109), Expect = 9.440e-5
Identity = 22/37 (59.46%), Postives = 27/37 (72.97%), Query Frame = 1 
Query:    1 ERLMSHAEVPLDRWTHVALVADAGKLRLYLNGALDSQ 111
            ER++S   VP  +W HVA+V +A KLRLYLNG LD Q
Sbjct: 2391 ERMVSKQVVPGGKWIHVAIVLEAVKLRLYLNGILDCQ 2427
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13689.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2R5GCX2_9STRA1.600e-659.46E3 ubiquitin-protein ligase HECTD3 n=1 Tax=Hondaea... [more]
A0A8K1C5J5_PYTOL3.690e-556.76Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
W2PWJ9_PHYPN9.440e-559.46Uncharacterized protein n=9 Tax=Phytophthora TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13689contigP-wetherbeei_contig13689:507..617 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LBD8
PFAMsRCC1
Model size111
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue0.000309
EggNOG OGsCOG5184@1|root,KOG1426@2759|Eukaryota
Descriptionguanyl-nucleotide exchange factor activity
Cds size102
COG categoryDZ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185994.7490673-CDS-P-wetherbeei_contig13689:506..6081683185994.7490673-CDS-P-wetherbeei_contig13689:506..608Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13689 507..608 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185994.7580004-UTR-P-wetherbeei_contig13689:608..6171683185994.7580004-UTR-P-wetherbeei_contig13689:608..617Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig13689 609..617 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13689.1.1prot_P-wetherbeei_contig13689.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13689 507..608 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13689.1.1

>prot_P-wetherbeei_contig13689.1.1 ID=prot_P-wetherbeei_contig13689.1.1|Name=mRNA_P-wetherbeei_contig13689.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=34bp
MSHAEVPLDRWTHVALVADAGKLRLYLNGALDSQ
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mRNA from alignment at P-wetherbeei_contig13689:507..617-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13689.1.1 ID=mRNA_P-wetherbeei_contig13689.1.1|Name=mRNA_P-wetherbeei_contig13689.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=111bp|location=Sequence derived from alignment at P-wetherbeei_contig13689:507..617- (Phaeothamnion wetherbeei SAG_119_79)
GAACGCCTTATGTCGCATGCGGAGGTGCCGCTGGACCGCTGGACGCACGT
TGCGCTCGTCGCGGACGCTGGAAAGCTGCGTCTCTACCTGAACGGCGCCC
TCGACAGCCAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13689:507..617-

>mRNA_P-wetherbeei_contig13689.1.1 ID=mRNA_P-wetherbeei_contig13689.1.1|Name=mRNA_P-wetherbeei_contig13689.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=102bp|location=Sequence derived from alignment at P-wetherbeei_contig13689:507..617- (Phaeothamnion wetherbeei SAG_119_79)
ATGTCGCATGCGGAGGTGCCGCTGGACCGCTGGACGCACGTTGCGCTCGT
CGCGGACGCTGGAAAGCTGCGTCTCTACCTGAACGGCGCCCTCGACAGCC
AG
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