mRNA_P-wetherbeei_contig13655.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13655.1.1
Unique NamemRNA_P-wetherbeei_contig13655.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13655.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13655contigP-wetherbeei_contig13655:1061..1754 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size694
Hectar predicted targeting categoryother localisation
Exons1
Cds size489
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185994.1832154-UTR-P-wetherbeei_contig13655:1060..12651683185994.1832154-UTR-P-wetherbeei_contig13655:1060..1265Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig13655 1061..1265 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185994.1909363-CDS-P-wetherbeei_contig13655:1265..17541683185994.1909363-CDS-P-wetherbeei_contig13655:1265..1754Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13655 1266..1754 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13655.1.1prot_P-wetherbeei_contig13655.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13655 1266..1754 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13655.1.1

>prot_P-wetherbeei_contig13655.1.1 ID=prot_P-wetherbeei_contig13655.1.1|Name=mRNA_P-wetherbeei_contig13655.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=163bp
QCNAETGSSGWNAFVSTRCTSCDLEVDCSESPFWIDDQSITIIRSSSFCN
TAPGSRCNVECAAGEFDGVAAGTATCRCDGNYYLDDSRVLGSCGWSNVGT
TVAGAPTPAPTPAGGEVAQPGDNTPWYSKRYGGEPLWFWFAIAGGVSLGA
IILAKCWCCANK*
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mRNA from alignment at P-wetherbeei_contig13655:1061..1754-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13655.1.1 ID=mRNA_P-wetherbeei_contig13655.1.1|Name=mRNA_P-wetherbeei_contig13655.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=694bp|location=Sequence derived from alignment at P-wetherbeei_contig13655:1061..1754- (Phaeothamnion wetherbeei SAG_119_79)
CAGTGCAACGCGGAGACAGGCTCCTCGGGCTGGAACGCCTTCGTCTCGAC
GCGCTGCACGAGCTGCGACCTCGAGGTCGACTGCTCCGAATCCCCCTTCT
GGATTGACGACCAGAGCATTACGATCATCAGGTCTTCCAGCTTCTGCAAC
ACGGCTCCCGGCTCACGATGCAACGTCGAATGCGCCGCCGGCGAATTCGA
CGGCGTCGCTGCCGGCACCGCGACTTGCCGCTGCGATGGCAACTATTATC
TGGATGATTCACGCGTGTTAGGCTCTTGCGGGTGGTCTAATGTTGGTACA
ACTGTGGCAGGTGCTCCGACTCCGGCACCGACGCCTGCTGGGGGGGAGGT
GGCGCAGCCCGGAGACAATACGCCATGGTACTCGAAGAGGTACGGCGGCG
AGCCGCTTTGGTTCTGGTTTGCAATTGCTGGGGGAGTCTCGCTGGGAGCG
ATAATTTTAGCCAAGTGCTGGTGCTGCGCCAACAAGTGAGGTTTTGGGTT
TTTGCTCTTGTCTTTACGAGAAGTGGATGGGTAGCTCGTACATACATACT
TTTAGTTTGAGGCGGCTTAGATCACGGTTCGGACCGATGGTGGCAGGTTT
TAGGAGTGAGCGCATGCCGCAAAAAGGCACGTGCAGCGGAGCAAGCCATC
GGCGATGAAAGGACACGGCCCTTGATGAATGTGTAAAATTCAGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13655:1061..1754-

>mRNA_P-wetherbeei_contig13655.1.1 ID=mRNA_P-wetherbeei_contig13655.1.1|Name=mRNA_P-wetherbeei_contig13655.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=489bp|location=Sequence derived from alignment at P-wetherbeei_contig13655:1061..1754- (Phaeothamnion wetherbeei SAG_119_79)
CAGTGCAACGCGGAGACAGGCTCCTCGGGCTGGAACGCCTTCGTCTCGAC
GCGCTGCACGAGCTGCGACCTCGAGGTCGACTGCTCCGAATCCCCCTTCT
GGATTGACGACCAGAGCATTACGATCATCAGGTCTTCCAGCTTCTGCAAC
ACGGCTCCCGGCTCACGATGCAACGTCGAATGCGCCGCCGGCGAATTCGA
CGGCGTCGCTGCCGGCACCGCGACTTGCCGCTGCGATGGCAACTATTATC
TGGATGATTCACGCGTGTTAGGCTCTTGCGGGTGGTCTAATGTTGGTACA
ACTGTGGCAGGTGCTCCGACTCCGGCACCGACGCCTGCTGGGGGGGAGGT
GGCGCAGCCCGGAGACAATACGCCATGGTACTCGAAGAGGTACGGCGGCG
AGCCGCTTTGGTTCTGGTTTGCAATTGCTGGGGGAGTCTCGCTGGGAGCG
ATAATTTTAGCCAAGTGCTGGTGCTGCGCCAACAAGTGA
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